Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                              <---------ANAC46                                            <---------ANAC58                                            <---------ANAC55(2)                                            <---------ANAC58                                  --------->ICU4                                  <---------YAB1           <-----------RAV1(1)                                <---------ICU4        <----------DOF2                        --------                                --------->YAB1<---------MYB52(1)                             --------                  <---------AHL20(2)        --------->ANAC55(2)                 <---------MYB52(2)                 --------->AHL20(2)-------->HAHB4 <---------ZAT18              <---------STY1(2)                 <---------AHL20(2)--------->YAB1<---------ZAT6 ----------->HVH21 --------->MYB52(1) --------->MYB46(3)            --------->ICU4--------->LBD16<-------GAMYB      --------->STY1(2)   tgaacaaacctatttcaaatttttttgtcttgaataatgataagttccgtagtgttcttttctgttgtgacaaaaaatactagctaacgagggataagca  29276800                                              --------->KAN4(2)                                             <---------HSFC1(2)                                             <---------KAN4(1)                                             <----------TaMYB80                                             --------->HSFC1(2)                                  --------->GLK1(2)<---------DAG2                                  <---------ARR11(3)<---------DAG2                        <---------ICU4       <---------HSFB2a(1)        <---------YAB1  --------->YAB1       --------->HSFB2a(1)      --------->ATHB12 <---------YAB1        --------->KAN4(1)     --------->ICU4    <---------ATHB12     <---------KAN4(2)               <-------TEIL       <-----     <---------YAB1    --------->ICU4       ---------->TaMYB80    <----------DOF2             <------ ->ANAC58            --------->YAB1       <------ZmHOX2a(1)    <-----------GT1------->TEIL    ------- ->ANAC58  <---------TOE2(3)      --------->ARR11(3)<----------DOF2  --------->TOE2(3)      ---------   caaaaacatgattaatgtttctctaatcattctaaaaatctacaggaatattcccttttcagttttttctttcttaaatgcatttcttagttcttcataa  29276900                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                -----                                                                                                -----                                                                                                <----                                                <---------MYB59                                 -----                                                --------->TOE2(3)                               -----                                                --------->TOE1(3)                               <----                                              ------->TEIL                                      <----                                       <---------AHL20(2)                                      ------                      --------->YAB1   --------->AHL20(2)                                      ------                      --------->AHL20(2)--------->ATHB12   --------->YAB1                      ------                   --------->YAB1    --------->TOE2(3)  <---------ICU4                        -------                  <---------ATHB51  <--------HAHB4      --------->YAB1                      <-------TEIL ----ICU4       --------->YAB1      --------->ATHB12   --------->ICU4                   <------------ ---YAB1     --------->YAB1         <---------ICU4    --------->AHL20(1)            ----------->GT1 -->ICU4  --------->YAB1           <---------YAB1    --------->YAB1       ---------->DOF2--------->At4g35610 >YAB1  --------->AHL20(2) ---------->DOF2<---------WOX13(1)   ----------->GT1 --------->CCA1(2)<----   ttcagtgagttttaataacaataataaaaaaaagagcatcattaattgaacctaaaaataatgagaagaaaaaccaaaaagatagagagtaagatgcacg  29277000     --------->ARR11(3)     <---------ARR11(3) ---------->DOF2 ----->ANAC58 ----->ANAC58 ----->ANAC46 -->PIF5 -->PIF4 ---PIF4 -->MYC3 -->MYC2                                                     --------->ALFIN1 ---MYC2                                       ---------->DOF2 ---MYC3 --------->MYB52(1)               <---------RVE1(1)<---------ANAC58 --->ANAC58                      <---------ZAT14      <-------GAMYB --->ANAC46  --------->At5g28300 --------->ZAT14     <---------MYB46(3) --->ANAC58 ----------->GT1   --------->MYB52(2)     --------->MYB52(2) >TEIL<------ZmHOX2a(2)     <--------P   --------->ARR11(3)<---------ANAC46 -----------TaNAC69(2)  <-----------RAV1(2)   <---------AHL20(2)----------->GT1<-----------GT1 ---PIF5<---------SPL7--------->GLK1(2)  <---------ARR11(3)<---------ANAC58<---------YAB1         ---   cgctaaagatcgaacggttaatagaatcaggttagtgaagagagatattaaaagtttgttgtcgtgtggcaaaaactataatttccttctcacaaacaaa  29277100                                   --------->ZAT6                       --------->LBD16                      <---------ANAC55(2)                    --------->ANAC46                  --------->ARR14(2)                        --------->MYB46(3)   <---------AHL20(2) --------->ANAC55(2)                <---------ALFIN1   --------->AHL20(2)<---------LBD16              <-----------GT1  <----------DOF2         ---------- ------>AHL20(2)  <---------ARR14(2) --------->At5g28300------>ZmHOX2a(1)           ------>NtERF2   aaaaataaaatcaaacacaaaatcccgtagcatcgtaacagtaattcgctattatctcctcaccctccgctttcgcttcccttctctgcccgtttcaatt  29277200                                       ------>MYB46(1)                                       ------>MYB83                                       -------->P  <<<<<<<<<TBF1                                      --------->MYB55(1)                                     <---------MYB111(1)                                     <---------MYB46(2)           ------>NtERF2                                     <---------MYB59             ----------->HVH21                                     <---------MYB111(2)         --------->WRKY12                               --------------->AtSPL3          --------->At4g35610                  <          --------->MYB52(1)   --------------->AtSPL8 <<<<<<<<<TBF1          --------->ZAT6      <--- -->CBF*TSS               --------->YAB1        <<<<<<<<<TBF1  <---------At4g35610           --------   ccttctaagacatcacggtctctctctataaaaacagtacctacctcttcttcttcttcttcattcgctgacttcgtttacactgaaaacaaatacctat  29277300                   --------->LBD16                  <---------DEAR3(1)               ------->GAMYB               --------->DEAR3(1)              --------->DEAR3(2)              --------->ATERF1(1)              <------------AtMYB77              <---------MYB55(2)             <---------ATERF1(1)         ------>NtERF2         <---------DEAR3(2)        <---------DEAR3(1)       <------NtERF2       --------->ATERF1(1)      <---------SPL7      <-----------HVH21      ------>NtERF2<---------ATERF1(1)      <---------ATERF1(1)      --------->AtMYB61               <----------DOF2     --------->DEAR3(1)        <---------ALFIN1             <------NtERF2     <---------ATERF1(2)       ------->GAMYB               --------->ZAT18     --------->RAP2.3(3)      <---------MYB55(2)           <---------ZAT18     --------->ATERF1(2)      --------->MYB46(3)           ------>NtERF2    --------->RRTF1(1)       -------->P                   <---------ANAC46    --------->RAP2.3(1)     --------->WOX13(1)            <---------ANAC58             ------>ZmHOX2a(2)    --------->ERF1--------->ATERF1(2)                     <---------ANAC58             ==============   --------->ABI4(1)    <---------bZIP60(1)          <------ZmHOX2a(2)                ===============   ------>NtERF2--------->MYB52(1)                  <---------ARR11(3)                <------ZmHOX2a(2)  --------->ANAC46--------->DEAR3(1)                --------->ARR11(3)               <---------ARR14(2)  --------->DEAR3(1) ----------->HVH21              --------->ARR14(2)               --------->ARR14(2) --------->DEAR3(2)<---------At4g35610         ----------->HVH21                  <---------HSFB2a(2) --------->ATERF1(1)<-----------HVH21         --------->MYB46(3)                  --------->HSFB2a(2) --------->MYB46(3)<---------DEAR3(2)--------->ZAT14<---------ARR14(2)     --------->DEAR3(1) ---------At5g28300--------->At4g35610 <---------ANAC46<-----------RAV1(1)--------->ATERF1(1)      -- --------HVH21--------->MYB46(3)    <---------MYB52(1)------>ZmHOX2a(2)  <---------ATERF1(1)   ------ ->TOE2(2)<------NtERF2 --------->bZIP60(1)   --------->DEAR3(2)  <-----------RAV1(1)<---------ARR11(3)   gtcaccgccgtcggcaaccgccggtgacatcaaccaccgtgaagtagacccgacgatctggcgcgcttgtgctggagcctccgtccagatccctgtcctt  29277400                                                                                     <---------ANAC46                                                                                  <---------ARR14(2)                                                                                  --------->ARR14(2)                                   <---------ZAT14                              <---------ATERF1(1)                                   --------->ZAT14                              <---------MYB46(3)                                   --------->ZAT18                              <---------DEAR3(2)                             <---------O2                                      <---------TOE1(2)                             <---------ANAC46                                  <---------DEAR3(1)                             --------->O2                                 <---------ALFIN1 =HOX2a_HOX2a            <-----------HVH21                               --------->ZAT2 =HOX2a_HOX2a      --------->HSFB2a(2)                                   --------->ANAC46 ------->ZAT6      <---------HSFB2a(2) <-----------RAV1(1)             <---------ALFIN1     --------- >ZmHOX2a(1)   <----------DOF2  --------->WRKY38(1) ------>ZmHOX2a(1)------>ZmHOX2a(1)    ------->TEIL   cactctagggtttactactttccacaaggtcacgttgagcactgttgccctctcctctctactcttccttcctccacctcgccggttccatgtatcatca  29277500                                   <---------ARR11(3)                            ----------->HVH21                                 --------->ZAT14                            --------->DEAR3(1)                                <---------ZAT14                         <---------WRKY38(1)                             <---------At4g35610                         <---------WRKY12                                --------->At4g35610                        ----------->HVH21                               ----------->RAV1(1)         -                       <-----------HVH21                              --------->At4g35610       <----                      --------->LBD16                                 <---------At4g35610   -------->HAHB4                   <------ZmHOX2a(2)                                  --------->ZAT2        <--------                  --------->ARR14(2)                                  <---------ZAT2        <--------                  <---------ARR14(2)                                 ----------->RAV1(1)   --------->ICU4                --------->DEAR3(1) --------->ARR11(3)          ----------->HVH21           <---------ATHB12           <---------ANAC58 --------->At1g77200    <---------YAB1 --------->ANAC46         <---------ATHB51           <---------ANAC58--------->DEAR3(2)  <---------DAG2  ----------->TGA1            <---------YAB1       <---------At4g35610 --------->MYB46(3)  --------->TOE2(3)<---------TGA2(2)    ------>NtERF2  < >YAB1 <-------GAMYB------>ZmHOX2a(2) <----------DOF2      --------->MYB46(3) <---------ZAT18   <----   cttcaattcagttgctcgccgatccggtcaccgacgaggtctttgctcaccttattcttcaaccgatgacgcagcagcagtttactccgactaattattc  29277600               <---------DEAR3(1)         <---------GLK1(2)         --------->ARR11(1)         --------->ARR14(2)         <---------ARR14(2)        <---------HSFB2a(1)     <---------At4g35610                                                                      <------ -------->ARR14(2)                                                       <---------At4g35610 <------- -------GT1<-------TEIL                ----------->GT1                ----------->RAV1(2)    <------- -AHL20(2)--------->ARR14(1)     <----------ID1                  --------->ANAC46           <------NtERF2 -ICU4 ----------->ARR10    --------->YAB1                       --------->ANAC58         --------->ALFIN1 ---------ARR14(2)         <---------YAB1                        --------->ANAC58        --------->ATERF1(1) -------------AGL1        <---------------------WRI1      <---------GLK1(2)            <---------AtMYB61   acgattcggcagattcgatggcgatgttgatgataacaacaaggtgactaccttcgccaaaattctcacgccttctgatgctaacaatggaggtggcttc  29277700  Previous    Next  AGI:  At1g77850.1    Description:  ARF17 (AUXIN RESPONSE FACTOR 17); transcription factor. Identical to Auxin response factor 17 (ARF17) [Arabidopsis Thaliana] (GB:Q84WU6;GB:Q93ZY5;GB:Q9CA12;GB:Q9SH16); similar to ARF10 (AUXIN RESPONSE FACTOR 10), miRNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G28350.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN80533.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340); contains InterPro domain Auxin response factor; (InterPro:IPR010525) Range:  from: 29277207    to: 29280313    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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