Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                           --------->ANAC55(2)                                                      <xxxxxxxxxxxxxxxxsmallRNA(s)                                                      <xxxxxxxxxxxxxxxxsmallRNA(i)                                                     <xxxxxxxxxxxxxxxxsmallRNA(i)                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                  <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                <xxxxxxxxxxxxxxxxsmallRNA(s)                                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                               xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                               <xxxxxxxxxxxxxxxxsmallRNA(s)                                               xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                               <xxxxxxxxxxxxxxxxsmallRNA(i)                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                              <xxxxxxxxxxxxxxxxsmallRNA(s)                                              xxxxxxxxxxxxxxxx>smallRNA(s)                                              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                             xxxxxxxxxxxxxxxx>smallRNA(s)                                             <xxxxxxxxxxxxxxxxsmallRNA(s)                                             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                             <xxxxxxxxxxxxxxxxsmallRNA(i)                                             <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                             xxxxxxxxxxxxxxxx>smallRNA(i)                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                            <xxxxxxxxxxxxxxxxsmallRNA(i)                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                            xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                            <xxxxxxxxxxxxxxxxsmallRNA(s)                                            xxxxxxxxxxxxxxxx>smallRNA(s)                                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                           <xxxxxxxxxxxxxxxxxsmallRNA(le3)                                           <xxxxxxxxxxxxxxxxsmallRNA(s)                                           xxxxxxxxxxxxxxxx>smallRNA(s)                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                           xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                           <xxxxxxxxxxxxxxxxsmallRNA(i)                                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                          xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                          xxxxxxxxxxxxxxxx>smallRNA(i)                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                          xxxxxxxxxxxxxxxx>smallRNA(s)                                          <xxxxxxxxxxxxxxxxsmallRNA(s)                                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                          --------->ALFIN1                                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                          xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                          <xxxxxxxxxxxxxxxxsmallRNA(i)                                         xxxxxxxxxxxxxxxx>smallRNA(i)                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                         xxxxxxxxxxxxxxxx>smallRNA(s)                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                         <xxxxxxxxxxxxxxxxsmallRNA(s)                                         <xxxxxxxxxxxxxxxxsmallRNA(i)                                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                        <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                        <xxxxxxxxxxxxxxxxsmallRNA(i)                                        xxxxxxxxxxxxxxxx>smallRNA(s)                                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                        <xxxxxxxxxxxxxxxxsmallRNA(s)                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                       <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                       xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                       xxxxxxxxxxxxxxxx>smallRNA(s)                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                       xxxxxxxxxxxxxxx>smallRNA(le3)                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                       xxxxxxxxxxxxxxxx>smallRNA(i)                                       xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                      xxxxxxxxxxxxxxxx>smallRNA(i)                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                      xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                      xxxxxxxxxxxxxxxx>smallRNA(si3)                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                      xxxxxxxxxxxxxxxx>smallRNA(se3)                                      xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                      <---------ANAC46<---------MYB52(1)                                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                      xxxxxxxxxxxxxxxx>smallRNA(s)                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                      <xxxxxxxxxxxxxxxxsmallRNA(s)                                     xxxxxxxxxxxxxxxx>smallRNA(s)                                     <xxxxxxxxxxxxxxxxsmallRNA(s)                                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                     <xxxxxxxxxxxxxxxxsmallRNA(i)                                     xxxxxxxxxxxxxxxx>smallRNA(i)                                    xxxxxxxxxxxxxxxx>smallRNA(i)                          --------->AHL20(1)                                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                   --------->AHL20(2)                                   xxxxxxxxxxxxxxxx>smallRNA(s)             --------->TOE1(3)                  <---------AHL20(2)xxxxxxxxxxxxxxxx>smallRNA(s) <---------YAB1         --------->AHL20(1)                 <---------AHL20(2)----------->HVH21xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)--------->ARR11(3)                 --------->AHL20(2)<---------SPL7 <xxxxxxxxxxxxxxxxsmallRNA(s)          <---------AHL20(1)              --------->AHL20(2) --------->ANAC46 <------ZmHOX2a(1)         <----------DOF2              <---------AHL20(2) <---------ANAC55(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------AHL20(1)             --------->AHL20(2)  --------->ANAC55(2)----------->GT1  --------->YAB1     <---------ARR11(3)   <------ZmHOX2a(2)             xxxxxxxxxxxxxxxx>smallRNA(s)  <-----------GT1       --------->AHL20(2)  --------->ARR11(3)            <---------LBD16<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->YAB1  <---------ARR11(3)            xxxxxxxxxxxxxxxx>smallRNA(i)   --------->YAB1  --------->AHL20(2)<xxx ---YAB1   --------->YAB1      <-----------GT1xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   --------->AHL20(2) >YAB1  --------->TOE2(3)    xxxxxxxxxxxxxxxx>smallRNA(s)<---------ANAC55(2)--------->TOE2(3)<-------   ataagatcaacattaataaataaatagttttttttacgggacgggtttggcaggacgttacttaataacaattgtaaactttaaaataaaaatattttat  29249500                                      <---------AHL20(2)                                      --------->AHL20(2)   <---------LBD16                               --------->AHL20(2)     <---------SPL7                               <---------AHL20(2)  <---------ANAC46                          <---------AHL20(1)      <---------DEAR3(1)                          --------->AHL20(1)     ------>NtERF2                         <---------AHL20(2)      --------->LBD16          <xxxxxxxxxxxxxxxxsmallRNA(i)--------->AHL20(1)  <---------ALFIN1           --------->ARR11(3)     xxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->AHL20(2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <-------TEIL <----------DOF2 --------->AHL20(2)  --------->ZAT14                <---------ARR11(3)    --------->CCA1(2)--------->AHL20(2)         --------->ANAC46     --------->ARR11(3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       <---------LBD16----------->GT1       <---------CCA1(2) xxxxxxxxxxxxxxxxxxxxsmallRNA(l2) <---------AHL20(2) --------->ALFIN1--------->GLK1(2) --------->TOE2(3) --AHL20(2)<xxxxxxxxxxxxxxxxsmallRNA(i)        <------NtERF2<xxxxxxxxxxxxxxxxsmallRNA(i)   atatagatacaatttgcaaacttttatatatattaaaaaattaattgtccccgcggtgtaccacgggttaaaatctagtagtacatatatcttaaactat  29249600                                                                       --------->MYB46(3)                                                                     ----------->RAV1(1)                                                                  <------MYB46(1)                                                                  <------MYB83                                                                <--------P                                                               <---------ANAC58                                                               <---------ANAC58                                                              <---------MYB46(3)                                    <---------AHL20(2)        --------->MYB55(2)                                   <---------WOX13(1)     -------->ATHB1------->GAMYB                            --------->ICU4                --------->ATHB12                 <---------                          --------->ATHB12                --------->ATHB51              <---------CCA1(2)              --------->ZAT18 --------->YAB1   --------->YAB1 --------->ATHB12 --------->YAB1         ---------->DOF2  <---------ICU4  <---------YAB1 <---------YAB1<---------MYB52(2)------->TEIL   agaaaatcaaacaaagtgcaaaatttagtcattagtaattgattatgtttcataagtgtattattggttggcaacaaacaaaaatagtatgtatctattt  29249700                               --------->YAB1                              <---------YAB1                      <---------ARR11(3)                                                            -                      --------->ARR14(2)   --------->ANAC58                                        <-                      --------->ARR11(3)   --------->ANAC58                                       <--                      <---------ARR14(2) <---------ALFIN1                                         --- --------AGL2       ----------->ARR10 --------->ZAT18            <---------WOX13(1)           <------   taggcccaaaatagttcaagagaagatttgttatcataagcccacaggcccattagacacatttttgatttacatgtaaatggggaagtcagcattttga  29249800                                                       ------->MYC3                                                       <-------MYC3          <---------ANAC46                            --------->TGA1a       --------->ALFIN1                               --------->O2  <---------WRKY18(1)                                 --------->ANAC58                   <---------ANAC46 --------->WRKY45                                     --------->ANAC58        <---------ARR11(3) --------->WRKY12                                     --------->ANAC55(2)    --------->GLK1(1) --------->WRKY38(1)                                  <---------ANAC55(2)    <---------GLK1(1) -------->DOF5.7(2)                                   <---------O2        --------->ANAC58 ------GAMYB --------->MYB111(1)                 --------->bZIP60(1)  --------->ANAC55(2)<---------ANAC58 -------MYB46(3)                                 <---------bZIP60(1)  <---------ANAC55(2)<---------ANAC58 --->ZmHOX2a(2)               ==================================bZIP_DOF  --------->ANAC58    <------ ---YAB1--------->ZAT14       ---------->DOF2 --------->ICU4    <---------YAB1--------->ARR11(3)  ---   tcgttgactgtggagtagttagatttacaaatgaaagagccgaatgagatgatgacacgtttcattccgattaagtaagaaatcttctcttgcttgtttc  29249900               --------->ARR11(3)                                       --------->AtLEC2               <---------ARR11(3)                                ---------->DOF2                 <---               --------->ARR14(3)           *TSS               <---------YAB1                --------               --------->GLK1(2)         <---------ALFIN1--------->AHL20(1)               --------->GLK1(2)      <-----------GT1               <----------ID1       <---------AHL20(2)        --------->CCA1(2) -----GT1--------->TOE2(3)          --------->ANAC58     --------->AHL20(2)       <---------ARR14(2) --->ZmHOX2a(1)<---------ARR14(3)   --------->ANAC58    --------->AHL20(2)        --------->ARR14(2)   ctcttaattaacatcaaaatcttgagtcgagtttgaagaagccaaactccaaaaaaaaaaaaattatcaaagaaatgcaaatgggatatgaaaatccaag  29250000                                                        <---------ICU4                          ------->TEIL                 <---------ATHB12                     <---------ANAC46        ------>NtERF2               --------->YAB1      <-----------HVH21   <------ZmHOX2a(2)               <---------ICU4     ------>ZmHOX2a(2)--------->SPL7                <---------REM1(1)       <---------ANAC46 --------->REM1(2)   --------->MYB46(3)                   <---------YAB1     ------->TEIL  <---------At5g28300      --------->DEAR3(1)                 --------->YAB1 ---ZmHOX2a(1)<---------YAB1  --------->WRKY38(1)<-----------HVH21            --------->ICU4    ----- ->TOE1(2)    --------->ICU4  --------->WRKY12   <---------SPL7             --------->YAB1     <-----   gactatgtacggtgtgatcatcaccgtgtacgttgatcgtcaaacgacgaccgtccgatcatttcaagggagacagaagaatgatgaaggggagagattc  29250100                 --------->ALFIN1               <---------ANAC58               <---------ANAC58       <---------MYB52(1)               --------->ALFIN1       --------->ARR14(2)         --------->ALFIN1             <---------ARR14(2)        ------->PIF5                 <-------GAMYB        <-------PIF5            <-------TEIL       ==============================bZIP_DOF       <---------ANAC58        --------->ARR14(1)       <---------TGA1a        <---------GLK1(2)       --------->TGA1a        --------->ARR11(1)       <---------bZIP60(2)    --------->ARR14(2)       ======================================MYC_MYB       <---------O2           <---------ARR14(2)       <---------ARR14(2)       <---------ANAC58     ----------->ARR10          --------->ARR14(2)      ------->TEIL  <---------PCF2<---------LBD16      <---------ARR11(1)    --------->At4g35610    ----------->HVH21     ---------->DOF2              --------->GLK1(2)     <---------At4g35610   --------->MYB46(3)<---------ARR14(2)      ------>ZmHOX2a(2) <---------At4g35610                 --   --------->DEAR3(2)--------->ARR14(2)   --------->ATHB12  <---------MYB52(1)         <------NtERF2 ---->ATHB12   <---------ANAC46--------->CCA1(2)      <---------ARR14(1)   <-----------RAV1(2)   <--- --TEIL<---------ANAC46------>ZmHOX2a(2) <---------YAB1------->TEIL      <-----------HVH21 <---------   attgaacggacgtggaagcgtgggatcggaaagatacgcggttatgatcggagagcgaatctgttagcttatattcgtcagaagagggccgagagtctca  29250200                --------->DEAR3(1)                --------->O2                <---------TGA1a                <---------bZIP60(1)                --------->bZIP60(1)                <---------O2                --------->TGA1a     <-------TEIL    --------->CCA1(2)    --------->GLK1(2)   --------->ARR11(1)   <---------ARR14(2)   --------->ARR14(2)  --------->GLK1(1)  <---------HSFB2a(1)  --------->HSFB2a(1)                         ----------->RAV1(2)  <---------GLK1(1)       ----------->GT1     --------->At4g35610                                  <- ----------->ARR10 <---------ANAC46        --------->RAP2.6(3)                                   <--- ------->LBD16  <---------bZIP60(2)       --------->MYB52(1)                        --------->TOE2(3) ------LBD16    --------->bZIP60(2) --------->ANAC58               --------->MYB52(1)        -------- --ARR10     ----------->HVH21      --------->ANAC58               <---------DOF5.7(2)       <-------   ccggagattcgaaatgcgacgtcgtagagagtgacaacaagcctgaacggctgagtccgagtccgaaggtaacgtttctctggttttcttaatgagatat  29250300                 --------->CCA1(2)                --------->ARR11(3)                --------->ARR14(2)                <---------ARR11(3)    <---------AHL20(2)                                                                       <-------    --------->AHL20(2)                                                                       <-------   --------->AHL20(2)                                <----------DOF2                         <-------   <---------AHL20(1)                             <---------ANAC58       ---------->DOF2     <-------   <---------AHL20(2)                             <---------ANAC46  --------->ICU4           <------- --------YAB1   --------->ARR11(1)                <---------ANAC58---------->DOF2         <---------MYB52(1) --------GT1    <---------ARR14(2)            <---------ANAC58 --------->ANAC46          --------->At4g35610 ->ARR11(3)   ----------->ARR10               <---------ANAC58 --------->ANAC58  --------->ANAC58 --ARR11(3) ----------------->AGL1       <---------ICU4        --------->ANAC58  --------->ANAC58   tacaatttaattgggccagatatgggccatgacttatcgttcatcttgacttgcgtttttagtttacgcaaagattaaagagcaagtaagcagttgcgtc  29250400  Previous    Next  AGI:  At1g77765.1    Description:  unknown protein Range:  from: 29249944    to: 29251131    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version