Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                         --------->YAB1                       <---------ICU4              --------->ARR11(3)              <---------ARR11(3)           --------->AHL20(2)                                                             <---------ICU4           --------->YAB1                                             <---------YAB1      --------->YAB1           <---------AHL20(2)                                  <---------ANAC55(2)  <-----------GT1       <---------AHL20(2)               --------->ICU4         --------->ANAC55(2)  --------->YAB1    ----------->GT1 --------->YAB1      <---------YAB1     --------->YAB1    --------->ZAT6       <-- --------ZAT6<---------CCA1(2)    <---------TOE2(2)       <---------YAB1   --------->MYB52(1)<-------   agagtcaagttaattatatctttgatcatggtttcatatgttattatttctaatgagtttatgatatgtattatgcttaactgtattcacaatattgaca  29185600                                                                                 <---------TOE2(3) --                                                                               --------->AHL20(2) ---                                                                           <---------AHL20(2) <------                                                                           <---------AHL20(1)<-------                                <----------DOF2                            --------->AHL20(1)<-------                       --------->YAB1                                      --------->AHL20(2)--------                       -------->ATHB1                                  <---------AHL20(2)    <-------                       --------->ATHB12                                <---------YAB1        --------                       <---------ICU4                                  --------->AHL20(2)    --------                      --------->ICU4                                  <---------AHL20(1)    ---------                      <---------ATHB12            --------->YAB1      --------->AHL20(1) <---------AHL20(2)      <----------DOF2 <---------YAB1             <---------YAB1       --------->AHL20(2)--------->AHL20(2) --------DOF2      <---------AHL20(2)         <---------YAB1         --------->YAB1     <---------AHL20(2) ----GT1   <----------DOF2----------->HVH21 <-----------GT1  <---------AHL20(2)<---------AHL20(2) <--   cttttattcttttctttttttttaatcattgacacttttattcatgttactattatagactatataaacaaatataattaattaatgaaattaaatatat  29185700      <-----------GT1 ------->AHL20(2)                                   <---------TOE1(3) ------>AHL20(2)                       --------->ARR11(3)                                      ------ ---AHL20(2)                           <---------ARR11(3)                                      ------ --ARR11(3)                  <---------YAB1         <---------TOE2(3)                          <----- --AHL20(2)                <-----------GT1       --------->AHL20(2)                            <----- ->AHL20(2)               <---------AHL20(2)     <---------AHL20(2)                       --------->ICU4 --AHL20(1)               --------->AHL20(2) <---------YAB1     --------->ANAC55(2)    ----------->TBP ->AHL20(1)         <---------AHL20(2) --------->AHL20(1)--------->AHL20(2)          --------->YAB1 ->ARR11(3)        --------->AHL20(2) --------->CCA1(2)  <---------AHL20(2)         <---------YAB1 -- >AHL20(2)     <---------AHL20(2)   <<<<<<<<<RAP2.2 <---------YAB1      ----------->GT1<---------YAB1 -------AHL20(2)   <---------AHL20(2)--------->ARR11(3) --------->AHL20(2)      --------->YAB1-------   ttaaaatataacttgatataatttaaaatttatcatttagatatattctaatttaagattaaatttaagtattcaagttaaatcatattataaatattaa  29185800                                 --------->YAB1                                      <---------ARR11(3)                              --------->YAB1                                         --------->GLK1(2)                             <---------YAB1                                          --------->ARR11(3)                          --------->AHL20(2)                                        --------->RVE1(1)                          <---------AHL20(2)                               ----------->GT1                          <---------YAB1                                  --------->HSFB2a(2)                       <---------ARR11(3)                                 <---------HSFB2a(2) <---------YAB1        --------->AHL20(1)                              --------->GLK1(2) --->AHL20(1)          --------->ARR11(3)              ------------>CBF<---------ARR14(2)      <----- --->AHL20(2)          <---------AHL20(1)            <---------bZIP60(1) <---------LBD16      ------- ----AHL20(2)          --------->AHL20(2)         ----------->HVH21    --------->ARR11(3)     ------- ----AHL20(1)          <---------AHL20(2)       <------MYB46(1)        --------->ARR14(2)  --------->ZAT6 ------->YAB1         --------->AHL20(2)        <------MYB83          --------->RVE1(1)   ----------- -->AHL20(2)        --------->AHL20(2)       --------->CCA1(2) ----------->GT1    --------->AHL20(2)-   attatacttatttgtttttaaaaaatatattattatagtaatgagagatttggtgacaccaatggaagtaaaaaatctggaaaaaaaaatctaacaataa  29185900                                                        <-------PIF4                                                        <-------MYC4                                                        <-------MYC2                   <---------AHL20(1)                   ------->MYC2                   --------->AHL20(1)                   ------->PIF5                   --------->AHL20(2)                   <-------PIF5              <---------AHL20(2)                        ------->PIF4             --------->YAB1                             ------->MYC3           <---------AHL20(2)                           <-------MYC3           --------->AHL20(2)                         ------->TEIL  --------->ANAC46 <---------AHL20(2)               <---------ZAT18 ----ICU4  --------->AHL20(1)                      --------->AtLEC2 -->AHL20(2)<---------YAB1                     ------------>CBF                --------->ANAC58 ---->TBP --------->YAB1                      --------->ANAC58         <------------CBF ->CBF --------->YAB1<------------CBF         --------->ANAC46       <---------YAB1 <---------At4g35610 -------->ANAC46  --------->AHL20(2)          --------->ANAC58   --------->YAB1--------->ANAC58    <-   atacaccaaaaattataatattaaattggtgagtatattaagtctctcaagcaatgcacatgctcaaaaatactattgggcaagacagcacatttcagtt  29186000                                                                                           --------->ANAC58              <---------At4g35610                                   <------MYB46(1) -------->P           <-----------GT1                                          <------MYB83  --------->AtMYB61     <----------DOF2                                               <---------TOE1(2)------>MYB46(1) -    <---------ANAC58                  <---------GLK1(1)           <---------MYB52(1)------>MYB83    -    <---------ANAC58      <---------REM1(1)<----------DOF2      --------->ATHB12 --------->MYB46(3) < --------AtLEC2  ------>NtERF2        --------->GLK1(1) ------>ZmHOX2a(1)  --------->AtLEC2--------->ANAC58   tccatggcttttttatcgctgccttctgatgtagtagaagaattccttttcaagactcctattgaatcgttggtactatgcaaaccaacctgcaaacaat  29186100                                                     <------ZmHOX2a(1)                       <-------                                                  --------->LBD16                           ---------                                            ================HOX2a_HOX2a                    <---------ICU4                                            ------>ZmHOX2a(2)                         <---------AHL20(2)                                           <---------GLK1(1)                          --------->AHL20(2)             --------->MYB46(3)            --------->GLK1(1)                      ----------->GT1   - --------->ANAC58                         <---------ARR11(3)                <---------YAB1 --------->ATHB12 --------->ANAC58                         --------->ARR11(3)            --------->ARR11(3) --------->YAB1 -------->SPL7------->GAMYB               <---------AGP1 --------->ATHB12 --------->YAB1  --------->ICU4 -------->ZAT18                   <---------ATHB12--------->HSFB2a(2) <---------AHL20(2)  <---------ATHB12 ---------ZAT18         <-------TEIL     <---------CCA1(2) <---------WOX13(1)    <---------TOE2(3)<--   tgtacgctctctgcaacgacaagagattcatttacaatcacttggatctctccgaggaacgattgatgcgaatttatcttgataagattaaaatcattaa  29186200             --------->ARR11(3)            --------->GLK1(1)            <---------CCA1(1)            --------->CCA1(1)            <---------RVE1(1)            <---------GLK1(1)            --------->RVE1(1)     --------->ZAT2      --------->TOE1(3)           ------>MYB46(1)     --------->ZAT6       --------->ZAT6 <---------MYB52(1)     -------->P--------->At4g35610              --------->ATHB12 --YAB1    --------->ARR11(3)     ------>MYB83             <---------TOE1(3)    <---------ICU4 >TOE2(3)  <---------ARR11(3)   --------->MYB46(3)         <---------TOE2(3)    --------->ATHB12 -------->LBD16       <---------ETT(2)           <-----------HVH21 <---------ICU4          --------->ETT(2) -------LBD16<---------ARR11(3) <-----------RAV1(2)   <----------DOF2          <---------YAB1   <----   tccggtaaccctagatatcttatgtctaccagtaccagccgagtttgattctgtcacttttaatgttattcattgcgatggattattgctatgtcgatgg  29186300                       --------->MYB46(3)                    --------->REM1(1)                   --------->SPL7               --------------->AtSPL8               --------------->AtSPL3               ------>ZmHOX2a(2)             <---------ARR14(2)             <---------AGP1                                                       <---------LBD16             --------->ARR14(2)                                                   <---------At5g28300       ===============HOX2a_HOX2a       <---------ARR14(2)                       <-----------GT1       <------ZmHOX2a(1)------->GAMYB   --------->ARR14(2)                 ------>ZmHOX2a(1)      --------->ZAT18  <---------MYB52(2)        <---------ANAC58          <----------DOF2      ----- -----PCF5  <XXXXXXXXXXXXXXXXXXXXXMIR833-5P      <---------ANAC58          ==========================   accacaagaggactagatcggtacaacaaacttgcagtttggaatccgatttcgggccaactcaaatttgttgaatccttttttcacggtgtaactgatc  29186400                    --------->YAB1                    -------->HAHB4                    <---------ICU4                   <---------ATHB51                   --------->ICU4                   <---------ATHB12         <---------ARR14(3)             --------->ANAC58       <-------GAMYB                      <------ZmHOX2a(1)           --------->ARR14(1)   ------------>AtMYB77                 --------->ANAC58           --------->CCA1(2)  --------->LBD16              --------->ATHB12          <---------ARR14(2)  <-----------HVH21         --------->MYB52(2)      --------->ARR11(3)          --------->ARR14(2) --------->ANAC46         <--------P     --------->ANAC58       <---------ANAC46      --------->O2   --------->ARR11(3)      --------->SPL7    <---------ARR14(2)   --------->TCP16(1) <---------ARR11(3)   <---------ANAC46             <------    --------->ARR14(2)   ------->TEIL       --------->ARR14(3)   <---------ANAC58             ------- ->ZmHOX2a(2)--------->ANAC58<---------O2   <---------GLK1(2)    <---------ANAC58--------->CCA1(2) ==HOX2a_HOX2a   --------->YAB1----------->HVH21     <-------GAMYB<---------SPL7<---------ARR11(3)   tatacggtttcggatacgctaataatggaccccgtgacagttacaagattttgagggttagttattggcgtaaggaatgcgagatatatgacttaaaatc  29186500  Previous    Next  AGI:  At1g77650.1    Description:  F-box family protein. Identical to Putative F-box protein At1g77650 [Arabidopsis Thaliana] (GB:Q9CAP3); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G22650.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN68677.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 29186004    to: 29187155    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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