Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                 ---------->ID1                                      <---------ARR14(2)               <------MYB46(1)        <---------ARR11(3)               <------MYB83           --------->ARR11(3)               <---------ANAC46       --------->ARR14(2)               <---------ANAC55(2)    <---------GLK1(2)              --------->MYB111(1)    <---------HSFC1(2)              --------->MYB59        --------->HSFC1(2)              ---------->DOF2              --------->MYB111(2)    <---------HSFB2a(1)   --------->LBD16              --------->MYB46(2)     --------->HSFB2a(1)  --------->LBD16                          --     <-----------TBP  --------->GLK1(2)--------->GLK1(2)  --------->ANAC46<---------ANAC58       ---- --------ARR11(3)     <---------ARR14(2)      <-----------GT1     <----------DOF2       <---------CCA1(2) ------->ARR11(3)     --------->ARR14(2)  <----------DOF2<---------LBD16  <---------ANAC58    <------ --YAB1     <---------MYB52(1)      ----------->ARR10   >>>>>>>>>>E2Fb    <---------ANAC46    -------   agatttgttttatagttaggtgagaatttggagggaagaagattcttttttcgctatttcccgctaaactttaaggccgtgtttgtctccgtctctctcg  29178000                                   <----------DOF2                               <---------At4g35610                               --------->At4g35610                       <---------AHL20(2)                      --------->AHL20(2)                                        ---------->DOF2         <----------DOF2   <-----------GT1                            --------->LBD16<---------ZAT18   <----------DOF2    <---------AHL20(1)                              ----------->GT1--------->ZAT18 ------->MYB46(3)     <---------AHL20(2)                             <---------HSFB2a(2) ----->ARR14(2)   --------->AHL20(2)                                 --------->HSFB2a(2)           <- ---HSFB2a(2)     <---------AHL20(2)   <-----------GT1              <---------LBD16 --------->ALFIN1 -->HSFB2a(2) <------------------------ANAC81             <---------AtLEC2 ---------->DOF2      -----   aaccgcttcttcttttttttttaatttttttgcagctctttttacacacataaattctttgcattacctctcgggaaaaaaggaaagtgggcttctaagt  29178100                                  --------->TOE1(3)                          --------->LBD16                        ----------->GT1                        <---------LBD16                     <------MYB83                   <---------                       <---------At5g28300                  <------MYB46(1)            <-------GAMYB                       --------->MYB52(1)                  --------->MYB111(1)        ----------->GT1                      <-----------GT1                     <--------P               <---------WRKY18(1)                  --------->AHL20(2)                <---------ARR14(2)            --------->WRKY12                  <---------AHL20(2)                --------->ARR14(2)            --------->WRKY38(1)                 <---------AHL20(1)                <---------GLK1(2)              --------->WRKY45           --------->ANAC58       --------->TOE2(3)<---------ARR14(2)             ----------->HVH21           --------->ANAC58      --------------->AGL15   <---------MYB52(1)    <---------ZAT6           --------->ANAC46      <---------------AGL15 <---------HSFB2a(2)   <---------ANAC46 <----------DOF2 <---------AHL20(2)             ----------------->AGL1       <---------ANAC58 --------PCF2    --------->AHL20(2)  ---------->DOF2--------->GLK1(2)  <---------TOE2(3)<---------MYB52(1) ---->ALFIN1  --------->WOX13(1)<-----------------AGL1 --------->HSFB2a(2)   <---------ANAC58   <----   gggccttaatttcaggcaattaatttaccggattacccttaaaggcttaaaccgattctggtagggggggataaatgttgagtgttgaccgttaaaccgt  29178200                                                                 <-----------HVH21                                                 <---------AHL20(2) <------------CBF                                           ----------->GT1      --------->ANAC46                                          --------->ANAC58   --------->GLK1(2)                                          --------->ANAC58   --------->ARR14(2)                ------          ------->MYC3                  ------>MYB46(1)      <---------ARR14(2)                ------          <-------MYC3                  --------->MYB52(1)  <---------GLK1(1)                 <------         --------->O2        <------MYB46(1)    --------->AHL20(2) --------->ATHB12       ------>MYB46(1)         <---------O2        <------MYB83--------->SPL7     --------->GLK1(1)             ------>MYB83        <---------TOE1(2)  <--------P   ------>MYB83       ---------->TaMYB80             -------->P- --GT1 <---------ALFIN1   <---------MYB52(1)    <---------AHL20(2)<---------MYB52(1)     ------>ZmHOX2a(1) -----MYB52(1)       <-----------GT1   <---------SPL7  <----------ID1          <---------YAB1<-------GAMYB   tgaattatcccacgttgtacatataaccggtaggctcaaaccgaacggaaataaataggggcaaatccgtcattgaacattatgttatctcctaccgttg  29178300          --------->ANAC58          --------->ANAC58      --------->WRKY12      --------->WRKY38(1)                           <----------DOF2    <-------GAMYB                                   <---------DAG2 -------->P                  <---------At4g35610   *TSS ------>MYB83            <-----------HVH21       <-----------GT1 ------>MYB46(1)      --------->ZAT2          ----------->GT1 --->WRKY38(1)        <---------ZAT2    ---------->DOF2                                         ----- --->WRKY12----------->GT1 <---------ZAT18  <------------CBF                                   <----- ---MYB52(1)          <---------At4g35610 <---------YAB1                                     -------- ----->ZmHOX2a(1)     --------->At4g35610 --------->ICU4  ------>ZmHOX2a(1)         <------ZmHOX2a(1)   tcctaccgttgaacggaaataaacagctgtgagctatttcgataaagattgtaacttttcctctctctctctctctacttcgaacaggaagaagatagat  29178400                                                                                                    -                                                                                               <-----                              <---------LBD16                                                --------        <----------DOF2--------->AHL20(2)                                     --------->ZAT6<-------- ---->GLK1(2)        --------->AHL20(2)                                     --------->YAB1  --------- ----GLK1(2)        --------->YAB1        <-----------GT1              --------->ZAT14      --------- --->ARR10       --------->TOE2(3)<---------GLK1(2)                  --------->ANAC46      <---------LBD16   tctctcagttctttcaaatccataaaaatatacctggaatcttgtttctatacttcttctgtttctcatactctccactaatactaacatttttccagaa  29178500                                                                                    --------->ALFIN1                                                                                   <-----------HVH21                                                                                  <---------ANAC46                                                     ----------->GT1              <---------ANAC58                                                    <-------TEIL                  --------->ANAC55(2)                                                  <---------ARR14(2)              <---------ANAC55(2)     <-----------GT1                              --------->ARR14(2)              <---------ANAC58 ---------->GT1                               ----------------->AG                <---------ANAC55(1) ----GLK1(2)                                  ----------------->AGL1       ------>ZmHOX2a(1) ->LBD16                                  --------->HSFB2a(1)          <---------ARR11(3)         --- -HSFB2a(2)                               <---------HSFC1(2)           --------->ARR14(2)        ---- >HSFB2a(2)              <----------DOF2  --------->HSFC1(2)           <---------ARR14(2)   --------- >HSFC1(1)               <---------DAG2   <---------HSFB2a(1)        ----------->ARR10 <---------ANAC46   ttttgttaaaccctacaaaaatttgaactttttaaaaccctagaaaattccaaattcgtaaaaccctagccaagttcctctattgcgtgaggggaactca  29178600       --------->ANAC58       --------->ANAC58       --------->ANAC46              <---------MYB52(1)      --------->LBD16      --------->LBD16    --------->TOE1(2)     --------->HSFB2a(2)     --------------->AGL15                   <---------ARR14(2)   --------->DEAR3(2)     <---------HSFB2a(2)     <---------------AGL15                   --------->ARR14(2) ------>YAB1           --------->GLK1(2)         <-----------------AGL2          <---------ATERF1(1) ----->At4g35610       --------->ARR14(2)        ----------------->AGL3          ------>NtERF2 >GLK1(1) ------->TEIL <---------ARR14(2)        <-----------------AGL3         <---------RAP2.6(2)   tcagaacccacgaatcgaaatgaagaatccagaaaaacccttacttctgtttctaattttagcttcaagcttagcatcaatggcgactgcaaaatccaca  29178700                                                                  <-----------HVH21                                                               ---------->DOF2                                                         --------->ORA47(1)                                                        --------->DREB2C(2)                                                        --------->MYB46(3)                                                        --------->DEAR4(1)                                                        <---------MYB46(2)                                                        --------->DEAR3(1)                                                       --------->ANAC46                                                       --------->DEAR3(2)                                            <---------ALFIN1--------->TOE2(3)                                           <---------ZAT14------>MYB46(1)                                    <---------ANAC58 --------->REM1(1)               ---------->DOF2      <---------ANAC58<---------ZAT14               --------->ZAT14 --------->ATHB12     --------->ZAT14    <---------ANAC58           <---------ICU4       <---------REM1(2)    <---------ANAC58       <-----------GT1 --------->ZAT14------>MYB83   atagagccttgctccagtaaagacacttgtaactcattgctaggctacactctctacaccgacctcaaagtcacagaagtcgcttctctcttccaagtag  29178800                                                                                        =============                                                                                        ------>ZmHOX2a(2)                                                                                       ==============                                                                                 ==============HOX2a_HOX2a                                                                                 ------>ZmHOX2a(1)                                                                                 =============HOX2a_HOX2a                                                                          --------->ARR11(3)                                                                          <---------ARR11(3) <-------                                              <---------TGA1a       --------->LBD16   --------->ARR14(2)                                              <---------O2         --------->LBD16    --------->ARR11(3)                                              ==================================MYC_MYB<------ZmHOX2a(2)                                              --------->TGA1a  ================================HOX2a_HOX2a                                <---------ARR11(3)             ===============================HOX2a_HOX2a                                --------->ARR11(3)<---------HSFB2a(2)   ----------->ARR10  --------->WOX13(1)                               <---------GLK1(1)  --------->HSFB2a(2)<----------CDC5  <---------ARR14(2)            <----------DOF2  --------->YAB1   --------->O2     ------>ZmHOX2a(1)--------->TOE2(3)            ============================================bZIP_DOF   --------->ANAC46   <---------ARR11(3)   acccagtttcaatgcttttgtctaactccattgatatctcttacccagacgtcgagaaccatgtccttcccgctaagctcttcctcaagatcccaatcac  29178900  Previous    Next  AGI:  At1g77630.1    Description:  peptidoglycan-binding LysM domain-containing protein. Identical to LysM domain-containing GPI-anchored protein 2 precursor [Arabidopsis Thaliana] (GB:Q6NPN4;GB:Q9CAP5); similar to LYM1 (LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR) [Arabidopsis thaliana] (TAIR:AT1G21880.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO61856.1); contains InterPro domain Peptidoglycan-binding LysM; (InterPro:IPR002482) Range:  from: 29178351    to: 29180424    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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