Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                   ----                  <---------ALFIN1                                                              -----             <---------At4g35610                                                         <------ZmHOX2a(1)             --------->At4g35610                                  --------->ANAC58     --------->LBD16             ------>ZmHOX2a(1)                                  ---------->DOF2       <---------LBD16        --------->GLK1(1)                            --------->ZAT6                <---------ARR14(2)        <---------GLK1(1)                       <---------ARR11(3)--------->ANAC58 --------->ARR14(2)   ------->GAMYB------>NtERF2            --------->ANAC46    ---------->DOF2      --------->WOX13(1) ---------->RAV1(1)      <<<<<<<<<TBF1 <---------ALFIN1  --------->YAB1   ------>ZmHOX2a(1)     -----   atcaacagagagttcctctgccacttcttcttctccagcatccacatcaatatcaacactcatcaaagaagccatcctctcagccaatccaggaatttcc  29147500                                          --------->WOX13(1)                                 <-------                                         --------->AtMYB61                              <---------ANAC58 <---------At4g35610                     --------->MYB46(3)                             <---------ANAC58 --------->At4g35610               --------->REM1(1)                                 --------->DOF5.7(2) -->ZmHOX2a(1)            --------->TOE1(3)------>MYB46(1)          --------->HSFB2a(2)--------->MYB52(2) ---->TOE1(3)             --------->TOE2(3)------>MYB83         <----------DOF2      <---------MYB52(1) ---->TOE2(3)----------->GT1      <-------TEIL      --------->AHL20(2)              <-----------HVH21   ttaagctgaagtaagagattaaaacaaaccttaagcttcatcaccaatccaaaattcaataagcttctttcgagagtgagagtaggcgttacctgcttat  29147600                                                 <---------ARR11(3)                                                 --------->GLK1(2)                                            --------->TGA2(2)                                           <-----------TGA1                                          =====================bZIP_DOF                                          --------->bZIP60(1)                                          <---------bZIP60(1)                             <---------At4g35610                                          --------->TGA2(1)                              <---------DEAR3(1)                                          <---------O2                                 --------->LBD16                                   --------->ANAC58                                    <-----------HVH21                        <---------ANAC58  <---------TGA1a       --------->ARR14(1)    <---------ANAC58              ======================================bZIP_DOF   --------->ARR11(1)     <---------ANAC58              ---------->DOF2      --------->ANAC58 <----------DOF2         <------ZmHOX2a(1)    <---------HSFB2a(2) <---------ANAC58  --------->O2         <---------GLK1(2) --------->HSFC1(2)    --------->HSFB2a(2) <---------ANAC46  --------->ANAC46     <---------ARR14(2)--------->At4g35610   <---------LBD16  <-----------RAV1(2)   --------->TGA1a      --------->ARR14(2)--------->HSFB2a(1)  <------NtERF2--------->DAG2 ------>ZmHOX2a(2) <---------GLK1(2)<-------TEIL    <---------HSFB2a(1) ---DOF2   <----------ID1 ----------->HVH21<-----------HVH21 ----------->ARR10   <---------HSFC1(2)   aggcatcgggaagacgaaaagtccaggcgtgatcgacaaggaagacgtcagaatctttaggcatagattcggcagtgaggagaagcttccgtcgctgatc  29147700                                                                                                    -                                                                                                    <                                                                                                    -                                                                                                   --                                     ========================================bZIP_DOF              --                                     ---------->DOF2                                               --                               <------NtERF2                                                      ---                              ------>NtERF2                                                      <---                              <---------ATERF1(1)                         ---------->DOF2        <---                             --------->RAP2.3(3)                     --------->ALFIN1       ---------                             --------->DEAR3(1)                      <------NtERF2         ----------                             <---------ATERF1(2)                   <---------ANAC46   <------NtERF2--                             --------->RAP2.6(2)                   <---------TGA1a   ------>NtERF2---                             --------->RAP2.3(2)                   ==================bZIP_DOF -------                             --------->RRTF1(3)                    <---------ANAC58  --------->RAP2.6(2)                             --------->DREB2C(2)                   --------->ALFIN1 <---------ATERF1(2)        <---------ARR14(2)   --------->ATERF1(2)                   <---------ANAC58 <---------DEAR3(1)        --------->ARR14(2)   --------->RRTF1(2)           --------->HSFB2a(2)       --------->ATERF1(2)       <------ZmHOX2a(1)     --------->ANAC46             <---------HSFC1(1)       <---------LBD16---     <---------TOE2(2)      --------->ORA47(2)            --------->HSFC1(1)      <---------RAP2.3(1)     <---------TOE1(2)      --------->ERF1  --------->YAB1<---------HSFB2a(2)     <---------ATERF1(1)  --------->ANAC46          --------->RAP2.3(1) --------->ANAC58   ================================== ------>ZmHOX2a(1)         <---------ATERF1(1)  --------->ANAC58   <---------O2  <---------DEAR3(1)--   atcctcgcaggattcgatttggaagtaatcgccgccatcaaaagtatcgtaagcaagtttctcgaagaggcgtgggtaaagcttcggcggcaaacctgaa  29147800    ---------->DOF2 <------NtERF2 ----->NtERF2 ---------RAP2.6(3) -------->LBD16 ------->DEAR3(1)                                                                             <------ ------->RAP2.6(2)                                                                        <---------ARR14(2) ------->ANAC46                                                                           --------->ARR14(2) ------>RAP2.3(1)                                                                       <----------DOF2 ------ATERF1(1)                                                                       <---------ANAC46 ------At4g35610                                                                       <---------ANAC58 >TOE1(3)                                                                              <---------ANAC58 ->RAV1(2)                             --------->ARR11(3)                             <-------TEIL<-- ------->RAP2.3(3)               <---------YAB1                                    <---------At4g35610 ------>ERF1                   --------->YAB1                                      <---------ZAT2---- --->DOF2                     --------->ICU4                                       --------->ZAT2---- ------>ATERF1(1)   <----------DOF2---------->DOF2                           --------->At4g35610----- ==============bZIP_DOF <---------TOE2(3)                                    <---------At4g35610----- ------->RAP2.3(2)------->TEIL<---------ATHB12                   ----------->HVH21 --------->At4g35610   gccgccaaaagtattccatgtactttgacgaaatcatcaaagctctcgattttgctcattgttctctctgaggggttttagcttaagctgcgttttcggc  29147900                                                                                                <xxxx                                                                                               <xxxxx                                                                                          <xxxxxxxxxx                                                                                          --------->LBD16                                                                                          <xxxxxxxxxx                                                                                         <---------LBD16                                                                                        <xxxxxxxxxxxx                                                                                        <---------LBD16                                                                                       -------->P                                                                                       --------->MYB52(1)                                                                                       <xxxxxxxxxxxxx     >>>>>>>>>TBF1                                                           --------->DAG2 <xxxxxxxx     *TSS                                                                   ---------->DOF2<xxxxxxxxx ---RAP2.3(1)                    <---------ZAT6                             ========================= ----NtERF2                <---------YAB1                           --------->ANAC58   ------>MYB46(1) -->NtERF2                 <---------AHL20(2)  ----------->GT1  ----------->GT1        ------>MYB83 < ------->RAV1(1)      <---------ZAT6          --------->DAG2<---------AHL20(2)         ============== ---->ETT(2)    --------->ALFIN1 ----------->GT1    --------->ICU4  --------->ANAC58  ------>ZmHOX2a(1) ------>HVH21 <---------O2--------->AHL20(2) ---------->DOF2--------->AHL20(2)      <xxxxxxxxxxxxxxxxsmallRNA(s)   gacagaagaagaagagaagtgggagtgatataatagggttaattttgaaaagtaataactaaaaaaatgtaagaaacaaaaagaggtcctaccgggagtc  29148000                                                                  <------MYB46(1)                                                     --------->TOE1(1)                                        <xxxxxxxxxxxxxxxsmallRNA(fl3)                                        <xxxxxxxxxxxxxxxsmallRNA(si3)                                        <xxxxxxxxxxxxxxxsmallRNA(le3)                                        --------->ANAC46          <---------ANAC55(2)                                       <xxxxxxxxxxxxxxxxsmallRNA(s)                                       <xxxxxxxxxxxxxxxxsmallRNA(i)                                       --------->ZAT14            <------MYB83                                       <---------ZAT14 *TSS       --------->At4g35610                                       <xxxxxxxxxxxxxxxxsmallRNA(se3)                                      <xxxxxxxxxxxxxxxxxsmallRNA(se3)                                      <xxxxxxxxxxxxxxxxxsmallRNA(le3)                                      <xxxxxxxxxxxxxxxxxsmallRNA(si3)                                      <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                                     --------->ANAC46--------->TOE2(1)                                     <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                     <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                     <xxxxxxxxxxxxxxxxxxsmallRNA(le3)            <xxxxxxxxxxxxxxxxsmallRNA(s)--------->REM1(1)         <---------ANAC46           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->TOE2(2)          <---------TOE1(2)        <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        --------->At4g35610        <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       <---------DEAR3(1)          <xxxxxxxxxxxxxxxxxxxxsmallRNA(l2)     <-----------HVH21             <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    ======================================MYC_MYB  --------->TOE1(2)    ========================bZIP_DOF<xxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <---------O2                  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <xxxxxxxxxxxxxxxxsmallRNA(s)  --------->MYB46(3)<---------LBD16    --------->O2                  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->ZAT2                <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    <---------ZAT2               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->TGA1a              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)----------->HVH21  <-----------RAV1(2)            -------->P     <---------GLK1(2)--------->MYB52(2)  <xxxxxxxxxxxxxxxxsmallRNA(s)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <xxxxxxxxxxxxxxxxsmallRNA(s)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxsmallRNA(i)     <xxxxxxxxxxxxxxxxsmallRNA(s)        --------->MYB59 xxxxxxxxxxxxxxxxxsmallRNA(l2) <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxsmallRNA(s)        <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->MYB111(1)      --------->ANAC55(2) xxxxxxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->MYB111(2)      --------->ANAC46 xxxxsmallRNA(s) <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         --------->MYB46(2)       --------->YAB1 xxxsmallRNA(s)  ---------->DOF2 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ---------->DOF2    <-------TEIL xxxxxxxxsmallRNA(s)     <xxxxxxxxxxxxxxxxxxxsmallRNA(l2)       <---------MYB55(1)  <---------AHL20(2) xxxxxxxsmallRNA(s)      <xxxxxxxxxxxxxxxxxsmallRNA(si3)   <---------ANAC46         --------->AHL20(2) =============bZIP_DOF <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <---------ANAC58   --------->TOE2(3) xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------MYB52(1) <-----------TBP---- =============MYC_MYB  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------ANAC58   --------->YAB1 --------   gaacccaggtcgctggattcaaagtccagagtgctaaccactacaccatagaacctcggatgcttgttaggtgaaagctatcttatttatatacataata  29148100                                                                               <---------ARR11(3)                                                                               --------->ARR11(3)               ----------->GT1                                --------->At4g35610           <-------- <---------ANAC58                                             <---------At4g35610   <---------WRKY18(1) --------->ANAC55(2)              ----------->GT1        ------>ZmHOX2a(1)    <---------GLK1(1) <---------ANAC58         ----------->GT1                ----------->HVH21    <---------CCA1(2) ----->CCA1(2)------------------------>ANAC81          <---------ICU4         --------->GLK1(1)  <--- ->AHL20(2) ---------->DOF2    ---------->DOF2  <----------DOF2          <---------At4g35610------>ZmHOX2a(1)   tatgcgtattagaaaaaaggaaacaaaatagaaaaaaggaaactttgtaacttttaatcctgaccgctgaaattttgctgatatcttgaccgtcctttga  29148200                                                                          --------->GLK1(2)                                                                <---------AHL20(2)                                                                <---------ICU4                                                                -------->HAHB4                                                               <---------YAB1                                                               <---------ATHB12                                                               <---------ATHB51                                                               --------->ICU4                                                          --------->TOE1(3)                 <---------ATHB51                  <---------HSFB2a(2)   <---------GLK1(2)                 <---------AHL20(2)             <---------ARR11(3)     <---------TOE2(3) --DOF2      ----------->TBP                    --------->ARR11(3)<---------YAB1 ---------CBF--------->AHL20(2)    ------>ZmHOX2a(1)      --------->TOE2(3)  <---------YAB1   attgatagctcgtctataaataatgctcttgctcttcctctctatgctaaaatctcgaaaccctaattattctaagattctaatttgtgaagtttgtgag  29148300                                                                              <---------ANAC46                                                                           --------->ALFIN1        <-                                                                         <---------ANAC46         <--                                                                         <---------ANAC58 -----------                                          <-------GAMYB                  <---------ANAC58--------->MYB46(3)                                         --------->MYB111(2)          <---------CCA1(2)----------->RAV1(1)                                         <---------MYB46(3)         --------->YAB1---------->DOF2<---                                        <--------P<---------YAB1   <---------ATHB12 --------->ANAC58         ----------->GT1             <---------TOE2(3)           --------->WOX13(1) --------->ANAC58   gttttagggatgggttacaatttctacatgagagtgtatgaggttgttgatgatgcttcaacggatgcaatcatatcgtggagcgaaagcaacaacagtt  29148400  Previous    Next  AGI:  At1g77550.1    Description:  protein binding / tubulin-tyrosine ligase. similar to unnamed protein product [Vitis vinifera] (GB:CAO65248.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN82450.1); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAO13468.1); contains InterPro domain Tubulin-tyrosine ligase; (InterPro:IPR004344); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) Range:  from: 29143193    to: 29147905    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g77560.1    Description:  pre-tRNA. tRNA-Gln (anticodon: TTG) Range:  from: 29147984    to: 29148055    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g77570.1    Description:  DNA binding / transcription factor. similar to AT-HSFA5 (Arabidopsis thaliana heat shock transcription factor A5), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G13980.1); similar to Os03g0854500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051938.1); similar to heat shock transcription factor 1 [Medicago sativa] (GB:ABJ09073.1); similar to heat shock transcription factor 1 variant c [Medicago sativa] (GB:ABJ09074.1); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain Heat shock factor (HSF)-type, DNA-binding; (InterPro:IPR000232) Range:  from: 29148244    to: 29148897    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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