Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                         <-----------GT1                      <---------YAB1                    <---------ICU4                                                                ---         --------->ANAC58    <---------ZAT18                                                     ----         --------->ANAC58    <---------ZAT14                                              <---------HSFB2a(1)  <---------ICU4   --------->ICU4                                                         --------->HSFC1(2)  --------->YAB1<---------AHL20(2)  --------->YAB1                                        <---------HSFC1(2) <---------ATHB12 --------->ANAC55(2)                                                     --------->HSFB2a(1) -YAB1   --------->ANAC46    --------->ZAT14  <---------ZAT6                       ------->TEIL  ----   acaatcatcaaacgacatttacttattacagagcacaatgagaaacaagtgttattcaaatgctagacttgaatacctctgaatgaatcagaggcttcca  29142700                                                                         <---------HSFB2a(2)                                                                         --------->HSFB2a(2)                          <---------------------WRI1                    <---------ANAC46                     <---------ARR14(2)                            <---------GLK1(2)                     ------->TEIL                                --------->LBD16                     --------->ARR14(2)                         --------->HSFB2a(2)            <-----                    <---------CCA1(2)                           <---------HSFB2a(2)            <-----        <---------HSFB2a(2)                                   <------ZmHOX2a(2)               <------        --------->HSFB2a(2)             --------->At4g35610   --------->CCA1(2)               -------        <---------LBD16  ------>ZmHOX2a(1)   --------->ANAC58--------->ARR11(3)       ---------->DOF2       <---------ANAC46  --------->AtLEC2    --------->ANAC58--------->ARR14(2)<---------ARR11(3) ------>ATHB12    <---------ANAC55(2)   <---------At4g35610  <---------ARR11(3)--------->ARR11(3) --- ------->HVH21    --------->ANAC55(2)---------->DOF2         --------->AGP1  ----------->ARR10<------ ----->ICU4<------ZmHOX2a(1)        --------->ANAC46         <---------ARR14(2)<---------GLK1(2)<----   tgatgggtttcgaggaagaaacgtatcctgcaaaatacacaaagctcacgaattcaatttcaagatccagaatttcgagtagatttttaaaagaaattcg  29142800                                                                --------->ATERF1(1)                                                              ----------->HVH21                                                              <---------DEAR3(1)                                                              --------->DEAR3(1)                                                             <------NtERF2                                                             --------->ATERF1(1)                                                             --------->RAP2.3(1)                                                            <---------ATERF1(1)                                                            <---------DEAR4(2)      --------->TOE1(2)                          --------->ALFIN1 ----ANAC58                                    <---------ANAC58 <------NtERF2                ------>ZmHOX2a(1) ----ANAC58                                    <---------ANAC46<---------ATERF1(1)      ------>MYB83 -TEIL--------->TOE2(2)            <---------ANAC46         <---------RAP2.3(1)       <---------MYB59 -------->AtSPL3        --------->ATHB12       <---------ANAC58------>NtERF2          --------->TOE2(3) ------>SPL7           --------->ICU4          <---------ANAC55(1)             --------->At4g35610 ---------AtSPL3     >>>>>>>>>NAM  <---------ANAC58        <---------DEAR3(1) --------->GLK1(2)     < -----SPL7<------ZmHOX2a(1)        <---------ANAC58    ---------->DOF2 --------->CCA1(2)------>MYB46(1)   taccgaaacgtaggagcaagaagggatgatggagatggagtgagaagaggcgtgttcgaaagcggcgacgcagagatgagaagctaaacctaatcctcgt  29142900                                      <---------At5g28300                                     <-----------GT1                                    --------->ZAT14                                    <---------ZAT14                                   <----------DOF2                            <-------TEIL  <---------MYB52(1)                 <---------ARR11(3)                           <------ZmHOX2a(2)                             <---------ANAC46                          <---------ARR14(2)                            <-------TEIL             <---               --------->ICU4--------->WOX13(1)                      <---------HSFC1(2)--------->HSFB2a(2)          --------->ANAC58<---------ARR11(3)                         --------->HSFC1(2)<---------HSFB2a(2)          --------->ANAC58--------->ARR14(2)                         <---------HSFB2a(1)   --------->ARR14(2)          ----------->GT1 --------->AGP1 <-------GAMYB            ---------->DOF2------>ZmHOX2a(1) ---------AtLEC2     ------->TEIL  <---------DAG2               <---------YAB1 ------>ZmHOX2a(2)<----   ttgaatgaaggaacgtaagtatgaaccagatccatcactttaccgttgtttctcatcttgtattctatgaaagcttcgtgatcctccgtctcgaatcgcc  29143000                                                             <---------ANAC46                                                            --------->ATERF1(1)                                                           --------->ABI4(1)                                                           ------>NtERF2                                                          --------->RRTF1(3)                                                          --------->DEAR3(1)                                                          --------->RAP2.3(3)                                                          --------->RAP2.3(2)                                                          --------->ANAC46                                                          <---------DEAR3(1)                                                         <------NtERF2                                                         --------->RAP2.6(1)                                                         --------->ERF1                                                         --------->RRTF1(1)                                                         --------->ORA47(2)                                                         --------->RAP2.3(1)                                                         --------->DEAR4(2)                                                         --------->ATERF1(1)                                                        ------>NtERF2                                                        <---------RAP2.3(1)                                  --------->ETT(2)      <---------ATERF1(1)                                  <---------ETT(2)      <---------RRTF1(1)                          <---------MYB46(3)           <---------DEAR3(1)                          --                      <---------AtMYB61              <-----------HVH21                        <------                    <----------DOF2 <------NtERF2   <-----------RAV1(1)                ---------->DOF2                  <---------YAB1 ---------->ID1------>NtERF2<------NtERF2            --------->TOE2(3)                 <---------ARR11(3)------>NtERF2   <---------MYB52(1)               --------->ANAC46 -------DOF2 --------->ANAC46  <-----------RAV1(1)<-------GAMYB--------->ALFIN1     ----------->GT1<- -----DAG2 <---------ALFIN1<------NtERF2      --------->DEAR3(1)                   <---------TOE2(3)   ttttgccttcgttccacactatctttggtggctctgtcgccatcttcgcctccgttgtcgccgccgtgttcgtcatttgtcaataaacgtaaatcgaagg  29143100                                                    --------->ZAT14                                                    <---------ZAT14                 <---------YAB1                --------->LBD16                          --------->ARR11(3)         <---------At4g35610                   <---------LBD16                          <---------ARR11(3)      *TSS     <xxxxxxxxxxxxxxxxsmallRNA(se3) ------->GAMYB  <---------YAB1           <---------TOE2(3)     <----------DOF2                         --------->MYB46(3)                  <----------DOF2  --- ------->HSFB2a(1)           <---------YAB1 <---------At5g28300            <------ZmHOX2a(1) -------- ---TOE1(2)  <---------GLK1(2)             <-----------GT1<---------MYB52(1)  <------ZmHOX2a(1)------ --------HSFB2a(1)        <-----------------AGL3<---------DEAR3(1)  --------->ICU4    <---------TOE1(3)   aatgtttctttatctgattcttatcgggcctattaatgggcctattaaccgcggtgttctgttatgaataatttttaggaggacttttaagattttaaaa  29143200        <-------TEIL                         --------->GLK1(1)  ---------->DOF2       <---------At4g35610  <---------GLK1(1)          --------->DAG2 ------>MYB52(1)       ------->TEIL ------->TEIL                 <---------At4g35610 ->AHL20(2)         <---------REM1(1)      <------ZmHOX2a(1)    ------->TEIL       <---------YAB1 --->YAB1--------->ATHB12           <-------TEIL     <-----------GT1   ---------->DOF2   taacgaaagcttcattggctaaatgtagctaataaacgtacattaggatttcaattttccacaatgtagctaataaagcaaaactctcattgtgcataac  29143300                                                                                                   <-                                                                                                   --                                                                                              <------                                                                                              -------                                                                                              <------                                                                                              <------                                                                                              <------                                                  ------->GAMYB                               <------                                                 <---------ATHB12                             <------               <---------YAB1                    --------->MYB46(3)                           -------             --------->YAB1                     -------->P                       <<<<<<<<<<<<<<<<<LFY            <---------YAB1                      ------>MYB46(1)                 --------->ZAT18 -----         <---------YAB1                         ------>MYB83                  <---------At4g35610  --         --------->ICU4                       --------->AtMYB61               --------->At4g35610  <-  ---------->DOF2     <-----------GT1        --------->MYB46(3)      ------>NtERF2            <------   ttacaaaagacatgattataaataaaaccattctagtttggaactaaaccaaccatcttctctcttctctctgccaattgagctcacaatggagtaacgt  29143400 --------ZAT14 ------->ZAT14 ---ANAC46 -->O2 ---ANAC55(2) ---O2<---------ANAC46                                   --------->ZAT6                          ---- ---ANAC58                                             <-----------GT1                    --------->ARR14(2) ---ANAC58                                          <----------DOF2                       <---------ICU4 ---TGA1a                                 <---------GLK1(1)                              --------->ICU4 -->TGA1a                                 --------->GLK1(1)  <---------ARR11(3)      <-----------HVH21 ---->ALFIN1                     --------->ATHB12------>NtERF2             <---------TOE2(3)     ---- ------->ZAT18                   --------->ATHB51--------->LBD16     --------------->AGL15<---------ARR14(2) --------ZAT18                  <---------YAB1  --------->ANAC46<----------DOF2     --------->bZIP60(2) ---ANAC55(1)              --------->ARR14(2)  <---------LBD16 <---------DAG2     <---------AtLEC2  <   gtgcagtctcgtctaagaagaggcacccgaatacattattgaagaaatctccgcctttaacaataccttttccatctatggtttccatgtcatatttgca  29143500           --------->YAB1           <---------ICU4          <---------ATHB12        --------->WOX13(1)         <---------ANAC46     --------->ANAC58              <---------AtLEC2     --------->ANAC58      --------->TOE1(2)       --------->ARR11(3)  <------NtERF2            --------->TOE2(2)   <---------YAB1                                       < --------->ANAC58         ----------->RAV1(2)--------->YAB1                                        <- --------->ANAC58       <-----------GT1      <---------ICU4                                      >>>> ----->ANAC58        <---------ANAC55(2)    <---------ATHB12                                  <------ ----->ANAC58 <------ZmHOX2a(1)<-------GAMYB--------->ICU4                     --------->ANAC58  ---- ---------LBD16      --------->ANAC55(2)  --------->WOX13(1)                   --------->ANAC58 <----   agcccgcatgcaatcaggacagtatgtaacctgcgttgcatagacaatcatgagaacttgcaatttccaagagtttttctcaaggaaacaagtatatgtc  29143600  Previous    Next  AGI:  At1g77540.1    Description:  Identical to Uncharacterized protein At1g77540 [Arabidopsis Thaliana] (GB:Q9CAQ2;GB:Q8LEN2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G21770.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61877.1); contains InterPro domain Acyl-CoA N-acyltransferase (InterPro:IPR016181) Range:  from: 29142520    to: 29143106    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g77550.1    Description:  protein binding / tubulin-tyrosine ligase. similar to unnamed protein product [Vitis vinifera] (GB:CAO65248.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN82450.1); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAO13468.1); contains InterPro domain Tubulin-tyrosine ligase; (InterPro:IPR004344); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) Range:  from: 29143193    to: 29147905    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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