Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                <---------At4g35610                                     --------->ANAC58                          <-----------HVH21                                    --------->ANAC55(2)     --------->ALFIN1--------->ATHB12                       <---------ALFIN1   ----------->GT1   <--- ----->GAMYB        <---------YAB1                       --------->MYB46(3) <---------ARR14(2)  ----- ------>RAV1(1)  ---------->ID1                     --------->YAB1    <---------ZAT18 --------->ANAC58   acagaagatggggcaatttgttctcattggtcagcctatcaactgttttcaaaatcacaacaacaccttcagtgagcatataggtaataagctataacat  29118900              --------->YAB1                                                     --------->ALFIN1     <---------ZAT18                                                        <---------STY1(1) ----TEIL  --------->WOX13(1)                            --------->ZAT6     --------->STY1(1) ---->AtLEC2 <---------ATHB12--------->TOE2(3)     ----------->GT1   ---------->DOF2----------->GT1   gcattagcctactcaatcatatatgaaacaacatcaatttcaattttagaaaactgtaaacactaaatccctaaaaccctagggtatggggaaatagagg  29119000                                                                 --------->ANAC46                                                               ---------->DOF2                                                           --------->TGA2(2)                                                          <-----------HVH21                                                          <-----------TGA1                                                         <---------TGA1a                                                         --------->ANAC58                                                         --------->ANAC58                                                         --------->TGA1a                                                         --------->ANAC55(2)                                                         --------->bZIP60(1)                                                         --------->O2                                                         ==========================================MYC_MYB                                                         --------->bZIP60(2)                                                         =================bZIP_DOF                                                         <---------O2                               -                                                         <---------bZIP60(1)                      <--                                                         <---------ANAC55(2)                      <--                                                         --------->ANAC46                         <--                                                  --------->ZAT14--------->ANAC58                 <--                                     <---------ICU4     <-----------bZIP910(1)                   <---              ---------->DOF2        --------->YAB1     <-----------STF1                         <---         <---------ANAC55(1)        <---------ATHB12   <---------ALFIN1                          <---         <---------ANAC46           <---------ATHB51 ------>NtERF2                         ------->GAMYB        <-----------------------TaNAC69(2)        --------->At4g35610            --------->HSFC1(2)--    <---------ZAT6            <---------CCA1(2)  --------->ALFIN1--------->ANAC58<---------HSFC1(2)<-   gagagagtgttatgtgtaaagttcaattactcgtatcaataatgtcacgatgtgcagccacgtcatcaagcgactgaggtcgatacttctcaacccaagg  29119100              <------NtERF2              <---------At4g35610              --------->ATERF1(1)              ------>NtERF2             <---------RRTF1(1)            <---------DEAR3(1)            <---------RAP2.3(2)           <---------At4g35610           --------->At4g35610           <---------LBD16          <-----------RAV1(1)--------->TOE2(2)   <---------DAG2            --------->DEAR3(1)  <------NtERF2<---------DEAR3(1) ------>NtERF2<---------LBD16--------->TOE1(2)                                                     -- -------->DEAR3(1)          --------->DEAR3(2)                                                     -- -------RAP2.3(1)  --------->GLK1(1)                                                               == -------ATERF1(1)<------NtERF2                                                                     <- ---------HVH21--------->ALFIN1    --------->O2                                                    <- -------DEAR4(2) --------->ATERF1(1)   <----------DOF2                                           ---- ------ANAC58------>NtERF2  --------->MYB46(3)                            <---------ANAC46      ----- ------ANAC58<---------RAP2.3(1) ------>NtERF2               <---------ANAC58    --------->TOE2(3)<-- ------DEAR3(1)<---------ANAC46 ----------->HVH21            <---------ANAC58   --------->ANAC46----- ------->ATERF1(1)<---------AtMYB61<---------O2          <---------ANAC58 <---------ANAC58     ------ -----NtERF2<---------RRTF1(2)  --------->DEAR3(1)       <---------ANAC58 <---------ANAC58   --------   cgtcgccttactctgcggcggaggtccaaaaccgacgacgtctttgcccttgtttatcggcttgcgaggctgaatttcgtctacgtcaatgtccatcgcc  29119200                                   <---------ICU4                                   --------->ATHB51                                   --------->AHL20(2)                           ---------->DOF2    <---------At4g35610 --------->At5g28300    --------->At4g35610 --------->LBD16 <---------MYB52(1)    <---------ANAC46 --------->DOF5.7(2)   --------->RAP2.6(2) ------->O2            --------->RAP2.3(2) ------->TGA1a        --------->RAP2.3(1) =====================================bZIP_DOF                                            <------NtERF2 --------TGA1a       ------>NtERF2 <---------AHL20(2)                                    ------>NtERF2 --------O2          --------->ABI4(1)                                           <---------MYB52(1) -->NtERF2          --------->ANAC46                                            --------->LBD16 ---->DEAR3(1)      --------->DEAR3(1)                                         --------->LBD16 ----NtERF2        --------->MYB46(3)       --------->GLK1(2)                  --------->ANAC46 ------>HVH21     <---------At5g28300      <---------GLK1(2)                  <---------LBD16 --->RAP2.3(1)<---------ICU4      --------->ICU4                    <-----------GT1     <----------ID1 ->DEAR3(1)  --------->At4g35610  <---------AHL20(2)    ---------->CDC5       --------->LBD16<-------   gacgttagctcagtcatcttcaccgccgtaaaagaaattatttcagaatctctctcgctcagccctaatttcactctctccccggtaatggcgccaaacc  29119300                                                                      <---------ANAC58                                                                      <---------ANAC58                                                                      <---------ANAC46                                                                     <---------At4g35610                                                                 <---------REM1(1)                ------>NtERF2 --------->TOE2(3)             --------->ANAC58                --------->LBD16                         --------->ANAC46  <---------YAB1               --------->ANAC58                      <---------At5g28300  <-----------RAV1(1)      <-               --------->ANAC46           --------->ARR14(2)--------->ANAC58                      ---       <----------DOF2       *TSS         <---------GLK1(1) --------->ANAC46                --------- --ALFIN1      --------->ANAC58  --------->MYB52(2) <-----------GT1 ------->TEIL         <---------ANAC46   ctcaaggctctttccttccgccattttctctaccttcgttgtcgaattcccattttacccccaagaaatgtagcttatgctggggtcattttcgtaaagc  29119400                                                                                         <---------ARR11(3)                                                                                         --------->ARR11(3)      <---------ANAC55(2)                                                        <---------YAB1     <  <-----------HVH21        ----------->GT1       <---------ANAC58          <---------AHL20(2)       < --------->LBD16       ----------->RAV1(1)       <---------ANAC58         --------->AHL20(2)        - --------LBD16     --------->ANAC58         <---------ICU4                --------->YAB1 --------->AHL20(1) ------>MYB52(1)   --------->ANAC58       ------->TEIL     <-------GAMYB <---------YAB1 <---------AHL20(2) ->DOF2            --------->ANAC46      <---------CCA1(2)<-----------RAV1(1)  --------->YAB1 <------   ttccggttacataaaaaaaacaccccaacaagtgaaaatttctgaatctttgcttaaactctgttgcattttgctattatatgatgatatatatattcac  29119500        <---------ANAC58        <---------ANAC58     <-----------GT1                                                <---------ALFIN1  <---------ARR11(3)                                             --------->ANAC46  <---------AHL20(1)                                             --------->REM1(1)  --------->ARR11(3)                                        <-----------GT1  --------->AHL20(1)                                 --------->GLK1(2) ---------ARR11(3)                                   --------->ARR11(3)      ---------->DOF2 ---------AHL20(1)      <----------ID1               <---------ARR11(3)<----------DOF2 -------->AHL20(1) --------->YAB1              --------->TOE1(3)--------->ZAT14                  ---- -----GT1         <---------YAB1               --------->TOE2(3)<---------ZAT14               <------   aaaatattttccttgtttctatgataacaacaaaaccaaaaaccaaaaacctcaaaatctttttactacaccactttaaaaaagactcttctcttgtgtc  29119600                                                                                                    <                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                    -                                                                                                    -                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                              -------                                                                                              <------                                                                                            ------>ZmHOX2a(1)                                                                        <---------ARR14(2)  =========        --------->At4g35610                                             --------->ARR14(2)  =========        <---------At4g35610                               <----------DOF2   ------>ZmHOX2a(1) -------        ----------->RAV1(2)                            --------->ARR11(3)   ========================= --------->ARR11(3)                                    <---------ARR11(3)   ========================= <---------ARR11(3)          <----------DOF2       ---------->DOF2     ------>MYB46(1)<---------HSFC1(2) ------>DOF2        <---------ARR11(3)        --------->LBD16          ------>MYB83   --------->HSFC1(2) -----HVH21         --------->ARR11(3)        ------>ZmHOX2a(1)    >>>>>>>>>>MYB80    --------->At4g35610   aaagctctccatctgagaccaagttcttgttctttgaagaatcacttcctgagaaaagctcttttatcaaaccaaatcctattggataagcttcctccga  29119700      ------>ZmHOX2a(1)  ------>ZmHOX2a(2) <------ZmHOX2a(2) --------->GLK1(1) <---------GLK1(1) ---------ARR11(3) -----------ARR10 -------->ARR14(2) ---------AGP1 -------->AGP1 ---------ARR14(2) -------->ARR11(3) -------->ARR14(3) ------HVH21 ----->RAV1(1) >NtERF2                                                                            --------->ATHB51 -->ANAC46                                           --------->ANAC58              <---------YAB1 ---ETT(1)                                           --------->ANAC58           --------->AHL20(2) ========HOX2a_HOX2a                          <xxxxxxxxxxxxxxxxsmallRNA(i)      <---------AHL20(2) =======HOX2a_HOX2a                           --------->ANAC58                  --------->AHL20(1) ---->HVH21     <---------YAB1                --------->ANAC58         ----------->GT1  --------->ATHB12 =======HOX2a_HOX2a                      --------->ZAT14             ---------->DOF2--------->ATHB12 ========HOX2a_HOX2a                     <---------ZAT14 ----------->RAV1(1)   --------->AHL20(2)   cagatctcctccatagtcgtgattcacactgttaacagaatagttcagaggcaacaaggcaacacaagaagaaaagagaaattttattattgatttgatg  29119800  Previous    Next  AGI:  At1g77470.1    Description:  replication factor C 36 kDA, putative. similar to EMB1968 (EMBRYO DEFECTIVE 1968), ATPase [Arabidopsis thaliana] (TAIR:AT1G21690.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61889.1); contains InterPro domain Replication factor C; (InterPro:IPR013748); contains InterPro domain DNA polymerase III clamp loader subunit, C-terminal; (InterPro:IPR008921); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593); contains InterPro domain AAA ATPase, core; (InterPro:IPR003959) Range:  from: 29116842    to: 29119329    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g77480.1    Description:  nucellin protein, putative. similar to nucellin protein, putative [Arabidopsis thaliana] (TAIR:AT1G44130.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61887.1); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007); contains InterPro domain Peptidase A1; (InterPro:IPR001461) Range:  from: 29119452    to: 29122232    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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