Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          --------------------->WRI1           <---------WOX13(1)      <-----------GT1  --------------------->WRI1<-----------GT1                                      --------->TOE1(3)  <----------DOF2   ------>ZmHOX2a(2)                                     <------ZmHOX2a(1) <---------ANAC58  <------ZmHOX2a(2)                                    --------->LBD16 <---------ANAC58 <---------ARR11(3)                                   <---------HSFB2a(2) ------->ID1      <---------ARR14(2)                                   --------->HSFB2a(2) -----AtMYB61     --------->ARR14(2)                                   <---------LBD16            <-- -------RAV1(1)   --------->ARR11(3)   <-----------HVH21        <-------TEIL     --------->TOE2(3)---   ggtgctttcttagattggccgatcttatttgaacaattcaccttcagagattgaaacatttacagattcaattccaggataaaccctaaaaactacattt  29088800                                                                                              <------                                                                                            ---------                                                                                            <--------                                                                                            <--------                                                                                            ---------                                                                                         <---------HSFB2a(2)                                                                                         --------->HSFB2a(2)                                                                                     --------->GLK1(1)                                                                                     <---------GLK1(1)                                                                                   =================HOX2a_HOX2a                                  --------->DAG2                                 <---------TOE1(3)               <------ZmHOX2a(1) ---------->DOF2                             --------->At5g28300      --------->MYB46(3)   <----------ID1                               ----------->HVH21<---------HSFC1(1) -------HSFB2a(2)       --------->DAG2                      <-----------GT1<---------DEAR3(1)<------ZmHOX2a(2) ------>HSFB2a(2)      ---------->DOF2       --------->GLK1(2)     --------->ZAT14 <------ZmHOX2a(1)   ctcgacgaacaaacacaggaattgaaaaaggaacaaaaagtagagagaatcgaagagaaattttaccagagtagacgacggtgaaggatttctagatcca  29088900                     --------->ALFIN1                   --------->DEAR3(1)                  --------->ATERF1(1)                                                            <---                  <------NtERF2                                                             <--------              <-----------HVH21------------>AtMYB77                                         ---------   <---------YAB1------>NtERF2--------->ANAC58                                        <---------ARR14(2) <---------At4g35610------>NtERF2                  <---------ANAC46                   --------->ARR14(2) -TEIL       --------->bZIP60(1)                  <------NtERF2                      <------ZmHOX2a(1) >ARR14(2)   <---------bZIP60(1)                 --------->LBD16                 <---------TOE2(1) -- -ARR11(3)   <---------bZIP60(2)  <---------DEAR3(2)       <-------TEIL          <---------TOE1(1) -- -ARR14(2)   <-----------RAV1(1)  <---------MYB46(3) --------->ALFIN1           --------->SPL7   ---- >AGP1       <---------REM1(1)--------->ANAC58 <---------LBD16                <---------SPL7<--------   ttcttctgatttgtgatgtcgccgaggggagcacgacggtttccaacatcgcggagtgaggttcgagtcttggctaagttcggacgaggaatcggattct  29089000        <---------GLK1(1) ------LBD16                                      <---------ARR11(3) -ARR14(2)                                        --------->ARR11(3) >ARR14(2)  --------->HSFB2a(2)                  --------->CCA1(1)                      <---------TOE2(3) ------->LBD16                       --------->ANAC58                                   <---------TOE1(3) ---->ZmHOX2a(1)                     --------->ANAC58         <------NtERF2  --------->LBD16 ------->RAV1(2)        --------->ARR11(3)       --------->RVE1(1)         <---------LBD16 <---------GLK1(1) -GLK1(2)   <---------HSFB2a(2)   <---------REM1(1)         <---------DEAR3(1)      --------->CCA1(2)   cctgagatagatttctcgacgaagaagacattgttgatgaagcaatcgaaaatatctcaggctcggcgttctcgttttccggtgagatttagggtttctc  29089100                                --------->ATERF1(1)                             <------ZmHOX2a(1)                      ==============HOX2a_HOX2a                      ------>ZmHOX2a(2)                     <------ZmHOX2a(2)                     ===============HOX2a_HOX2a                    <---------ARR14(2)                                 <---------AHL20(2)                    --------->ARR14(2)                                 --------->AHL20(1)                    --------->AGP1                                    --------->AHL20(2)                    --------->ARR11(3)                                --------->ATHB51                    --------->ARR14(3)                         >>>>>>>>>>AtSR1                    <---------ARR11(3)                         <---------LBD16 *TSS                    <---------ARR14(3)                 ----------->GT1<---------AHL20(2)                   <---------GLK1(1)            --------->ANAC58     --------->ICU4                   --------->GLK1(1)            --------->ANAC58 --------->LBD16     --------->ATHB12                  ----------->ARR10           --------->MYB52(1)--------->ANAC46  <----------DOF2   ttctgcgagagtgagagagagagatcttgaaggagacgacgagaaacaaaacggaaaatgaaaaacgcggaattattttgttttctttgattaggggttt  29089200                                                                                              <------                                                                                              -------                                                                                            <------MYB83                                                                             ------->TEIL   <------MYB46(1)                                                                             --------->ARR14(2)                                            --------->WOX13(1)            --------->ANAC55(1)--------                                          <---------MYB52(1)              --------->ANAC58  <--------                                          ------------>CBF                <---------ANAC55(2)--------               <---------YAB1             <------NtERF2                   --------->ANAC55(2)<-------             --------->YAB1              <---------RAP2.6(3)              --------->ANAC46 <---------MYB46(3)            <---------YAB1        <---------ICU4               <---------MYB52(1)      --------->ATHB12          <---------AHL20(2)   --------->WOX13(1)      ---------->DOF2    --------->ANAC58--------->ALFIN1         --------->AHL20(2)  <------ZmHOX2a(2) --------->AHL20(2) <---------YAB1      <---------YAB1         --------->ICU4      ------------>CBF  --------->YAB1 <-------GAMYB  <---------ARR14(2)   <---------AHL20(2)  --------->MYB52(1)<-----------HVH21------------>MYB.PH3(1)   --------->YAB1  -  --------->AHL20(2)   <-----------GT1  --------->RAP2.6(2)  ----------------------->TaNAC69(2)    <-   tctattttatatttattataagaaataacggatcaatcttggccgtcaattaaaactcaaagaccgttacgattacacgtatttgatcatcagtgggtcc  29089300 ---TCP15(1) -->PCF2 ->TCP15(1) -TCP15(2) ->TCP20    --------->ANAC58                                      <---------STY1(1)          -------- --PCF2     --------->ANAC58                                      --------->STY1(1)      <---------MYB52(2) -------->YAB1    <----------DOF2                   --------->HSFB2a(1)                 --------->ANAC58 --------YAB1     <---------DAG2                   <-----------ARR10    ----------->GT1 --------->ANAC58   cattatagtttagcgcgaaacttttccctgacttacataggcattactaggcaaaccttctccatgccctagaggggtttaaacaagagcaaggaacaac  29089400                                                                                                    =                     --------->ARR11(3)                                                             -                     <---------ARR11(3)                                                       -------                    <---------CCA1(2)                                                       <--------             <---------bZIP60(1)                               --------->GLK1(1)          ------>ZmHOX2a(1)             <---------TGA2(1)                                 <---------GLK1(1)     <---------At4g35610             --------->bZIP60(1)           <-------TEIL      --------->ATHB12        --------->At4g35610 ->MYB46(3)  --------->GLK1(1)   <---------MYB52(1)<----------DOF2   <---------CCA1(2)  ----------->RAV1(2)   tatctattgcaagtgatatcatatatcttcttatcgttttgtacatacagtctctttcagcattgatttccatatcacaaggtgatgagctcctgcaggt  29089500                             --------->GLK1(2)                             <---------ARR14(2)                            <---------GLK1(1)                      <---------ANAC46                    --------->O2                                    --------->At4g35610                    <---------O2                                    <---------At4g35610                    --------->TGA1a                              --------->At4g35610                    <---------TGA1a         <----------DOF2      <---------At4g35610 =============================MYC_MYB    <---------ARR11(3)      <---------ZAT2 ----------->MYB.PH3(1)     --------->GLK1(1)                 <---------At4g35610            <------- ---->GT1           ===================================bZIP_DOF <-----------RAV1(1)   --------->ZAT6 ---RAV1(2)    <---------ZAT18  <---------YAB1               --------->ALFIN1     <------ZmHOX2a(2)   aaaaactgttagaacatcgcactcgtgtggaaatctgattcaatttcttttgagtattgcagagtgctgctgctcagtttttggatcaacactaactttg  29089600                 >>>>>>>>>>AtWER   <---------HSFC1(2)   --------->HSFC1(2)        ---------->DOF2   --------->HSFB2a(1) ------>NtERF2   <---------HSFB2a(1)--------->RRTF1(3)  <---------ARR14(2)  --------->RAP2.3(3)  <-----------ARR10--------->ANAC46  <---------ARR11(3)  --------->DEAR3(1)  --------->ARR14(2) --------->ERF1          --------->ZAT18  --------->GLK1(2)------->GAMYB           <---------WOX13(1)         <---------YAB1  --------->ARR11(3)--------->At4g35610  --------->ATHB12       <---------YAB1                ------- <---------GLK1(2)--------->MYB46(3)    <---------YAB1    --------->DAG2                    --------- ---DOF2       --------->MYB46(3)     <----------DOF2    ---------->DOF2          ---------->DOF2   tgagaatcttctcaactacaaccgcagccatcaaagtagcctttgattgcacaattcgcaaaagttgtgattctgatatatcaaaaaaggaagtagatga  29089700  Previous    Next  AGI:  At1g77390.1    Description:  CYCA1;2 (CYCLIN A1;2); cyclin-dependent protein kinase regulator. Identical to Cyclin-A1-2 (CYCA1-2) [Arabidopsis Thaliana] (GB:Q9FVX0); similar to CYCA1,1 (CYCLIN A1,1), cyclin-dependent protein kinase regulator [Arabidopsis thaliana] (TAIR:AT1G44110.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61905.1); contains InterPro domain Cyclin (InterPro:IPR006670); contains InterPro domain Cyclin-related (InterPro:IPR013763); contains InterPro domain Cyclin, A/B/D/E (InterPro:IPR014400); contains InterPro domain Cyclin, N-terminal (InterPro:IPR006671); contains InterPro domain Cyclin-like (InterPro:IPR011028) Range:  from: 29086798    to: 29089179    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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