Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            <---------ARR11(3)                         --------->REM1(1)                       ----------->RAV1(1)                                                       ----                     --------->LBD16                                                            <----                    --------->ANAC58                                                           <-----                    --------->ANAC46                                                 --------->ARR14(2)                    --------->ANAC58                                                 --------->GLK1(2)                 --------->ARR14(2)                                                  <---------ARR14(2)                 <---------ARR14(2)                                                 <---------GLK1(2)                <---------ALFIN1                                                    <---------ARR14(2)              <---------ALFIN1                                                  --------->At4g35610  --------->CCA1(2)<---------LBD16         <----------DOF2                      <---------At4g35610<- ------DOF2--------->ANAC46            <---------ZAT18                       ---------->DOF2<--------   ttagatatgttcttcgccacatccgcaacatctctcacttgttcgcttgaactatacagcctcgcagacagaaaactcttacagcagaatctggattgac  29078300                                                                                          --------->MYB52(1)                                                                                         ----------->HVH21                                                                                         ----------->TGA1                                                                                       <---------ZAT2                                                                                       ----------->RAV1(2)         <---------YAB1                                                                --------->At4g35610   <---------YAB1                                                                      --------->ZAT2 --------->YAB1                                                                   <-----------GT1 ----->ATHB12                                   <---------ARR11(3)           <---------AHL20(2) -----YAB1                                      --------->ARR11(3)           --------->AHL20(1) ----TOE2(3)            ------->TEIL        --------->At4g35610              --------->AHL20(2) --------WOX13(1) --------->ICU4         <---------At4g35610                --------->AHL20(2)      - -WOX13(1)   ------>ZmHOX2a(2)           --------->At4g35610        ---------->DOF2    <---------At4g35610   gattgataattctgatcgtcatgttgaatctaacccagaccgtagcagaagaactacattcccatcgcataaaagaaaaaaaattaaccagctgacgaaa  29078400                                                                     <---------ZAT14                                                                     --------->ZAT14                                                                     --------->ZAT18                                                                <------------CBF                                                              <---------AHL20(2)              ------>ZmHOX2a(1)                               <---------YAB1             --------->TOE2(3)                             --------->AHL20(1)       ------>ZmHOX2a(2)                                   <---------AHL20(2)       ==============HOX2a_HOX2a      --------->TOE2(3)    <---------AHL20(1) <---------At4g35610         <---------TOE2(3)             --------->AHL20(2) --------->At4g35610     <------------CBF                 --------->AHL20(2)             <-----------ARR10 -------->MYB52(1)      --------->ATHB12              ------->TEIL   <---------ZAT18     --------->ARR14(2)   atcaactgatctaatcctaaaacgcttcattgaggcatttcgtcaaacagttgatgaacattatattattgtgcacataaacaaatacacaaatctactt  29078500                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                             ------>NtERF2                                                                                             <-------                                                                                            <--------                                                                                            ---------                                                                                           <------NtERF2                                                                                           --------->ATERF1(1)                                                                                          ------>NtERF2                                                                                          <---------ATERF1(1)                                                                                         ----------->HVH21                                                                                         --------->DEAR3(1)                                                                                         <---------DEAR3(1)                                                                                        --------->RAP2.3(1)                                                                                        ------>NtERF2                                                                                       <---------ATERF1(1)                                                                                     ------->MYC3                                                                                     <-------MYC3<---                                                                                    --------->ANAC46                                                                                    --------->O2-----                  <-----------GT1                                            <---------KAN4(1)<------NtERF2               ------->TEIL                                                  --------->KAN4(1)-------            <---------ANAC55(2)                                      <---------LBD16<---------O2<----            --------->ANAC55(2)                     --------->ARR14(2)      <---------KAN4(2)<-------        <---------GLK1(2)                           <---------ARR14(2) --------->LBD16<---------DEAR3(1)        --------->ARR11(3)            <---------ANAC46               --------->At4g35610--------->ATERF1(1)      --------->ICU4               --------->ALFIN1<------ZmHOX2a(1) <---------At4g35610<------NtERF2    ---------->DOF2          ------->TEIL       <---------LBD16  <-----------HVH21 <---------LBD16   gatcagaaaagattatgtatttacctgtatgaatcaagtggtgtctgttttcaggaactgtggtttttgtcaccggagaataatccacgcggcgacggcg  29078600                                                                      <---------YAB1                                                                ------->MYC2                                                                <-------MYC2                                                                ------->MYC4                                                                <-------MYC4                                                                ------->PIF5                                                                <-------PIF5          <-------MYC3                                                                <-------MYC3          ------->MYC2                                                                ------->MYC3          ------->MYC3                                                               <<<<<<<<<<AtMYC2       <-------MYC2                                                               --------->ANAC55(2)   <---------ANAC55(2)    <-----------------------TaNAC69(2)                         --------->bZIP60(2)   <---------ANAC58  ----------->HVH21                                            <---------O2          <---------ANAC55(1)  ----------->TGA1                                             <<<<<<<<<<ABI5        --------->ANAC55(2) ----ANAC46                                                    <---------TGA1a       ================ --->DEAR3(1)                                                  --------->TGA1a       <---------O2 ----DEAR3(1)                              ==============================bZIP_DOF    --------->TGA1a --RAP2.3(1)                      ------>NtERF2                <--------ABF1         <---------bZIP60(2) -DEAR3(1)                       --------->DEAR3(1)            <---------ANAC55(2)   <---------ANAC58 >DEAR3(1)                    --------->ANAC46                 <<<<<<<<<<HY5         <---------TGA1a ---NtERF2                    --------->ANAC58                 ====================================== ->NtERF2                  <---------ARR14(2)                  --------->O2          <---------ANAC46 -->ATERF1(1)              --------->ZAT14 ---------->DOF2    <<<<<<<<<<<<AtMYC2 <-----------HVH21 -------HVH21              --------->ARR14(2)        --------->AHL20(2)     ------------>CBF<-------- --ATERF1(1) <---------ZAT14  --------->ANAC58    ----------->GT1     --------->ICU4 --------->O2   tcgaatgacgaagactgaagagcgactagtatacgccaacgttttgaaagtgagataaatttgccacgtgtcatttttgtcaatgtcacgtgttctttta  29078700                                                     ------>MYB83                                                     --------->MYB52(1)                                                   <---------MYB111(2)                                                   <---------MYB46(2)                                                   <---------MYB59                                                   <---------MYB52(2)                                                   <---------MYB111(1)                                                   --------->AtMYB61                                                  --------->At4g35610                                                  <---------ANAC55(2)                                                  --------->ANAC55(2)                       <---------AHL20(2)       <-----------GT1        <---------RVE1(1)                    ------>MYB83            <---------AHL20(2)        <---------ARR11(3)                    ------>MYB46(1)         --------->AHL20(2)    ---------->DOF2          <------------CBF                  ---------->DOF2      --------->AHL20(2)   ----------->HVH21    ----------------->AGL3            ----------->RAV1(1)   --------->AHL20(2)      --------->ANAC46 ==bZIP_DOF       <---------MYB59 --------->ARR14(2) ------>MYB46(1)  <---------GLK1(2)            -- ==bZIP_DOF       --------->TOE2(3)  *TSS--------->YAB1--------->MYB46(3)  <-----------GT1      ----- --DOF2 --------->AHL20(2)        <---------ARR14(2)--------->MYB55(1)--------->ARR11(3)        =====   ctaagagccataaattggaacctaattaatggtccaaatccaacaataaatcacctaaccaaaaaaataaaagatttttacattcgacgagaccgtgatc  29078800                                            ------>NtERF2                                            --------->ABI4(2)                                          --------->ATERF1(1)                                          <------NtERF2                                          --------->DEAR4(2)                                          --------->RAP2.3(1)                                         <---------RAP2.3(1)                                         <---------ERF1                                         <---------RAP2.6(1)                                         <---------DEAR4(2)                                         <---------RRTF1(1)                                         <---------ATERF1(1)                                         ------>NtERF2                                        --------->ATERF1(2)                                        <---------ATERF1(2)                                        <---------RAP2.3(3)                                        <---------RAP2.6(2)                                        <---------RRTF1(2)                                        <---------ANAC46                                        <---------ANAC58                                        <---------ANAC58                                        <---------RRTF1(3)                                        <---------DEAR3(1)                                       --------->ATERF1(1)                                       <---------ABI4(1)            >>>>>>>>>>WRKY11           <------NtERF2                    ------>ZmHOX2a(2)            <---------WRKY18(1)      --------->ALFIN1                  <------ZmHOX2a(2)            >>>>>>>>>>WRKY6        <---------O2  =============================HOX2a_HOX2a           --------->WRKY12        <---------bZIP60(2)          <---------ANAC58                 ----           --------->WRKY45        <---------ANAC58             <---------ANAC46          --------->ZAT2           --------->WRKY38(1)     <---------ANAC58   <---------ANAC58<---------ARR11(3)  <---------At4g35610         <-------GAMYB             <---------ANAC46   <---------ANAC58--------->ARR11(3)  <---------ZAT2        <---------MYB46(3)    --------->REM1(2)  ==============================HOX2a_HOX2a--------->At4g35610       <---------AtMYB61     --------->ALFIN1    ------>ZmHOX2a(1) <---------ZAT18    --------->LBD16    <---------DEAR3(1)     <---------ANAC46--------->DEAR3(1)   <---------ANAC58     <---------ANAC46 ------->MYB52(1)       --------->ANAC46<---------DREB2C(2)  <---------ARR14(2)     <---------LBD16 ->ZmHOX2a(2)          ------>ZmHOX2a(1)<---------RAP2.3(2)  --------->ARR14(2)    <-----------RAV1(1) =============================HOX2a_HOX2a<---------ORA47(2)<---------MYB46(3)  <---------ARR14(2)<---   gaaacggcgatggttgaccagagtcctcgccgtgttgtcgtggcggcgctcctattgtttgtggttctgtgcgatctttcgaattctgcgggagctgcga  29078900                                                                            <---------AHL20(1)                                                                            --------->AHL20(1)             <---------ANAC58                                              --------->AHL20(2)             <---------ANAC58                                              <---------AHL20(2)          <----------DOF2                                             --------->LBD16        --------->ZAT2                                               --------->ANAC58        <---------ZAT2                                               --------->ANAC46  <----------DOF2        <---------At4g35610                                          --------->ANAC58<---------DAG2        --------->At4g35610                                   ------>ZmHOX2a(1)   <-----------GT1    <-----------HVH21 --------->ANAC58                    --------->ARR14(2)<---------AHL20(2) ----->ARR14(2)       --------->ANAC46          <---------At4g35610  --------->ANAC55(2) ------ARR14(2)       --------->ANAC58   <---------GLK1(2)<---------ARR14(2)--------->AHL20(2)------>ZmHOX2a(1)   attctgtgtcagctttcgttcagaacgccatcttgtccaacaagattgtcatcttctccaaatcctactgcccgtaattaaatttcactctttctcctaa  29079000                                                    ------>ZmHOX2a(1)                                               <----------DOF2                    --------->GLK1(1)                                              <---------ANAC58             --------->GLK1(1)                                              <---------ANAC58          --------->LBD16                                        <---------ARR14(2)             <---------ANAC46                     <----------DOF2    --------->ARR11(3)            <---------LBD16               --------->ANAC46        <---------CCA1(2) --------->ATHB12<------NtERF2       <-----------------AGL1       <-------TEIL   --------->TOE2(3)<---------DEAR3(1)      <--------   tttgaaatttgcaatttaggcaactttccaagttttggttcatatctagctttccttattcattggcacgatggcggaattcgaaattccaagactttgt  29079100                                          <---------ANAC58                                          <---------ANAC58                                          <---------RAP2.6(2)                                      <---------ANAC58                                      <---------ANAC58                               <------MYB83                               <------MYB46(1)                               <---------ANAC55(2)                               --------->ANAC55(2)           --------->At4g35610      <---------ANAC46                              --------->MYB59                <---------At4g35610   <---------MYB46(3)                              --------->MYB111(1)     <---------ARR14(2)           <-----------RAV1(1)                              --------->MYB46(2)      ------->TEIL    <---------TOE2(3)      ----------->GT1        <---------MYB55(1)       --------->ARR14(2)<------ZmHOX2a(1) --DOF2                     <---------MYB52(1)     ----------->GT1    <---------TOE1(3) --------->ALFIN1   gttgaaagttgtgaattttgttttggatgtgttaggtattgtttgcggtcgaaacgtatattcagccaacttaaggaagagccatttgttgtggagcttg  29079200  Previous    Next  AGI:  At1g77360.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G71060.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42245.1); similar to Os03g0761300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051352.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 29076877    to: 29078322    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g77370.1    Description:  glutaredoxin, putative. Identical to Glutaredoxin-C3 precursor (GRXC3) [Arabidopsis Thaliana] (GB:Q9FVX1); similar to glutaredoxin, putative [Arabidopsis thaliana] (TAIR:AT5G20500.1); similar to hypothetical protein [Thellungiella halophila] (GB:ABB45843.1); contains InterPro domain Thioredoxin-like fold (InterPro:IPR012336); contains InterPro domain Glutaredoxin, eukaryotic and viruses; (InterPro:IPR011899); contains InterPro domain Thioredoxin fold (InterPro:IPR012335); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Glutaredoxin subgroup (InterPro:IPR014025) Range:  from: 29078737    to: 29079690    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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