Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                    <---------ATHB12                             <------NtERF2                           --------->ATERF1(2)                           <---------DEAR3(1)                          <---------LBD16                         <---------RAP2.3(1)                       <-------TEIL--------->YAB1                      --------->CCA1(2)                      --------->GLK1(2)                      --------->ARR14(1)        --------->WRKY12<---------DEAR3(1)  -------->P         --------->ARR14(2) ------->GAMYB       --------->ARR11(1)                                                --------->RAP2.3(3) ---------MYB55(2)   <---------GLK1(2)                                                 --------->DEAR3(1) ---------MYB111(2)  <---------ARR14(2)                                              <---------ZAT18 -------->MYB46(3) ----------->ARR10                                                 ------>NtERF2 --->ANAC58 --------->ANAC46 --------->At5g28300           ----------->GT1         <---------At4g35610 --->ANAC58 --------->ANAC58--------->RAP2.6(2)            <---------ANAC55(2)<----------DOF2 --->ANAC46 --------->ANAC58------>NtERF2                 >>>>>>>>>>AtSR1     <---------DAG2 -ZAT18 --------->WRKY38(1)<---------ATERF1(2)     --------->TOE2(3)       <---------ALFIN1   caacaacccgttgaacgccacaagattcggcggcaaatcatacttctccatcacattaaacgcgtaaatcgcctcatccactttctgcgccctcgcatac  29077900                                                                    <---------TGA1a                                                                    ===========================bZIP_DOF                                                                    --------->O2                                                                    --------->TGA1a                                                                    <---------O2                                                                  ----------->RAV1(1)                                                              <---------ARR14(2)                -----                                               <---------ICU4 --------->ARR14(2)               <-----               ---------->DOF2                 --------->ATHB12 ------>ZmHOX2a(2)              ------       <---------YAB1                         ========================HOX2a_HOX2a      <---------ARR11(3)       --------->ANAC58                       ------>ZmHOX2a(1)<------ZmHOX2a(2)       <-----------ARR10       --------->ANAC58                       <---------YAB1  <---------ARR11(3)      <---------CCA1(2)       --------->ANAC46                       =========================HOX2a_HOX2a  <---------DAG2  <---------ICU4--------->DAG2          <<<<<<<<<TBF1   --------->YAB1     <---------------AtSPL3 ------>ZmHOX2a(1)     --------------->AGL15 --------->TOE2(3)--------->ARR11(3)    <----------DOF2   ttcctcatcacgatacaaaaagtctctacatttagcatcttcttcttcctcattgcattgataagatcccacatgagcttgtactgccttatcttcgccg  29078000                    --------->TOE1(2)                   --------->ANAC58                   --------->ANAC58                  <---------ZAT18                <---------ANAC58          <---------ICU4                         <---------ANAC58                  ------->GAMYB       <---------ICU4                        <-------GAMYB                        --------->MYB46(3)       --------->YAB1      --------->ZAT6   <---------ANAC58         --------->GLK1(2)      <---------ATHB12 --------->ANAC58     <---------ANAC58         ------->TEIL <---------MYB52(2)    --------->WOX13(1) --------->ANAC58---------->DOF2              --------->ARR14(2) ---->LBD16       --------->SPL7    --------->ANAC58                --------->ARR11(3)             -- ----ANAC46     <---------SPL7      --------->ANAC58       --------->ATHB12------->TEIL         ----- --->DEAR3(1) --------->ALFIN1 --------->ZAT14<---------MYB52(1)    <---------ARR14(2)          -----   tagactcaatcatcatgtggtacgcacgaacactatgctcgtaatgccgttgcttctcagaccattggaagaacctgtatgtcaacaaaccagcattcct  29078100                                                                               --------->LBD16                                                                              <---------ANAC58                                                                              <---------ANAC46                                                                              <---------ANAC58                                                     ------>ZmHOX2a(2)       <-----------------------TaNAC69(2)                                               <----------DOF2      --------->MYB46(3)                    --------->REM1(1)        ------>MYB83          --------->ANAC58                  --------->HSFB2a(2)        ------>MYB46(1)       --------->ANAC58      <---------AHL20(2)                    <---------ALFIN1    --------->WRKY18(1) ----->TEIL <---------ARR11(3)             ------->GAMYB       <-----------HVH21 ->ZmHOX2a(1)     <---------HSFB2a(2)--------->TOE1(3)     <-----------------------TaNAC69(2)       < ---->LBD16 --------->ARR11(3)       --------->TOE2(3) ---------->DOF2       <---------LBD16    <----   gaatctatttaaaacatcttctacaacttcttgtgaaacccttaacccactttgatctaaagccgagtcaagcaccaattgcggagaagacatcaatact  29078200                          <---------ARR11(3)                         --------->REM1(1)                       ----------->RAV1(1)                                                       ----                     --------->LBD16                                                            <----                    --------->ANAC58                                                           <-----                    --------->ANAC58                                                 --------->ARR14(2)                    --------->ANAC46                                                 <---------ARR14(2)                 <---------ARR14(2)                                                  --------->GLK1(2)                 --------->ARR14(2)                                                 <---------ARR14(2)              <---------ALFIN1                                                      <---------GLK1(2)  --------->CCA1(2)<---------LBD16                                              --------->At4g35610 <<<<<<<<RAP2.2 <---------ALFIN1           <----------DOF2                      <---------At4g35610<- ------DOF2--------->ANAC46            <---------ZAT18                       ---------->DOF2<--------   ttagatatgttcttcgccacatccgcaacatctctcacttgttcgcttgaactatacagcctcgcagacagaaaactcttacagcagaatctggattgac  29078300                                                                                          --------->MYB52(1)                                                                                         ----------->HVH21                                                                                         ----------->TGA1                                                                                       <---------ZAT2                                                                                       <---------At4g35610         <---------YAB1                                                                --------->At4g35610   <---------YAB1                                                                      ----------->RAV1(2) --------->YAB1                                                                   <-----------GT1 ----->ATHB12                                   --------->ARR11(3)           --------->AHL20(1) -----YAB1                                      <---------ARR11(3)           <---------AHL20(2) ----TOE2(3)            ------->TEIL        --------->At4g35610              --------->AHL20(2) --------WOX13(1) --------->ICU4         <---------At4g35610                --------->AHL20(2)      - -WOX13(1)   ------>ZmHOX2a(2)           --------->At4g35610        ---------->DOF2    --------->ZAT2   gattgataattctgatcgtcatgttgaatctaacccagaccgtagcagaagaactacattcccatcgcataaaagaaaaaaaattaaccagctgacgaaa  29078400                                                                     --------->ZAT18                                                                     --------->ZAT14                                                                     <---------ZAT18                                                                <------------CBF                                                              <---------YAB1              ------>ZmHOX2a(1)                               <---------AHL20(2)             --------->TOE2(3)                             <---------AHL20(1)       ==============HOX2a_HOX2a                           <---------AHL20(2)       ------>ZmHOX2a(2)              --------->TOE2(3)    --------->AHL20(1) <---------At4g35610         <---------TOE2(3)             --------->AHL20(2) --------->At4g35610     <------------CBF                 --------->AHL20(2)             --------->ARR14(2) -------->MYB52(1)      --------->ATHB12              ------->TEIL   <---------ZAT14     <-----------ARR10   atcaactgatctaatcctaaaacgcttcattgaggcatttcgtcaaacagttgatgaacattatattattgtgcacataaacaaatacacaaatctactt  29078500                                                                                               <-----                                                                                               <-----                                                                                               ------                                                                                             ------>NtERF2                                                                                             <-------                                                                                            <--------                                                                                            ---------                                                                                           --------->ATERF1(1)                                                                                           <------NtERF2                                                                                          <---------ATERF1(1)                                                                                          ------>NtERF2                                                                                         <---------DEAR3(1)                                                                                         --------->DEAR3(1)                                                                                         ----------->HVH21                                                                                        --------->RAP2.3(1)                                                                                        --------->ATERF1(1)                                                                                       <---------ATERF1(1)                                                                                     ------->MYC3                                                                                     <-------MYC3<---                                                                                    --------->ANAC46                                                                                    <---------O2-----                  <-----------GT1                                            <---------KAN4(1)<------NtERF2               ------->TEIL                                                  --------->KAN4(1)-------            <---------ANAC55(2)                                      <---------LBD16--------->O2<----            --------->ANAC55(2)                     --------->ARR14(2)      <---------KAN4(2)<-------        <---------GLK1(2)                           <---------ARR14(2) --------->LBD16<---------DEAR3(1)        --------->ARR11(3)            <---------ANAC46               --------->At4g35610<------NtERF2      --------->ICU4               --------->ALFIN1<------ZmHOX2a(1) <---------At4g35610------>NtERF2    ---------->DOF2          ------->TEIL       <---------LBD16  <-----------HVH21 <---------LBD16   gatcagaaaagattatgtatttacctgtatgaatcaagtggtgtctgttttcaggaactgtggtttttgtcaccggagaataatccacgcggcgacggcg  29078600                                                                      --------->ICU4                                                                <-------PIF5                                                                <-------MYC4                                                                ------->PIF5                                                                ------->MYC3                                                                <-------MYC2                                                                ------->MYC4          <-------MYC2                                                                <-------MYC3          <-------MYC3                                                                ------->MYC2          ------->MYC3                                                               ======================================                                                               <--------ABF1          ------->MYC2    <-----------------------TaNAC69(2)                         <---------TGA1a       --------->ANAC55(2)  ----------->TGA1                                             --------->TGA1a       <---------ANAC55(1)  ----------->HVH21                                            <<<<<<<<<<AtMYC2      <---------ANAC46 ----DEAR3(1)                                                  --------->bZIP60(2)   <---------ANAC55(2) ----ANAC46                                                    <<<<<<<<<<ABI5        ================ --->DEAR3(1)                              ---------->DOF2     --------->O2          <---------ANAC58 --RAP2.3(1)                      ------>NtERF2                <---------ANAC55(2)   --------->TGA1a -DEAR3(1)                       --------->DEAR3(1)            --------->ANAC55(2)   <---------TGA1a >DEAR3(1)                    --------->ANAC46                 <---------O2          --------->O2 ---NtERF2                    --------->ANAC58                 <<<<<<<<<<HY5         <---------O2 ->NtERF2                  --------->ZAT14 ==============================bZIP_DOF    <---------bZIP60(2) -->ATERF1(1)              --------->ARR14(2)                 <<<<<<<<<<<<AtMYC2 <-----------HVH21 -------HVH21              <---------ARR14(2)        --------->AHL20(2)     ------------>CBF<-------- --ATERF1(1) <---------ZAT14  --------->ANAC58    ----------->GT1     <---------YAB1 <---------ANAC58   tcgaatgacgaagactgaagagcgactagtatacgccaacgttttgaaagtgagataaatttgccacgtgtcatttttgtcaatgtcacgtgttctttta  29078700                                                     --------->MYB52(1)                                                     ------>MYB83                                                   <---------MYB59                                                   <---------MYB52(2)                                                   --------->AtMYB61                                                   <---------MYB111(2)                                                   <---------MYB46(2)                                                   <---------MYB111(1)                                                  --------->ANAC55(2)                                                  --------->At4g35610                                                  <---------ANAC55(2)                       <---------AHL20(2)       <-----------GT1        <---------RVE1(1)                    ------>MYB83            <---------AHL20(2)        <---------ARR11(3)                    ------>MYB46(1)         ---------->DOF2       ---------->DOF2          <------------CBF                  --------->AHL20(2)   --------->AHL20(2)   ----------->HVH21    ----------------->AGL3            ----------->RAV1(1)   --------->AHL20(2)      --------->ANAC46 ==bZIP_DOF       <---------MYB59 --------->ARR14(2) ------>MYB46(1)  <---------GLK1(2)            -- ==bZIP_DOF       --------->TOE2(3)  *TSS--------->YAB1--------->MYB46(3)  <-----------GT1      ===== --DOF2 --------->AHL20(2)        <---------ARR14(2)--------->MYB55(1)--------->ARR11(3)        -----   ctaagagccataaattggaacctaattaatggtccaaatccaacaataaatcacctaaccaaaaaaataaaagatttttacattcgacgagaccgtgatc  29078800  Previous    Next  AGI:  At1g77360.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G71060.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42245.1); similar to Os03g0761300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051352.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 29076877    to: 29078322    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g77370.1    Description:  glutaredoxin, putative. Identical to Glutaredoxin-C3 precursor (GRXC3) [Arabidopsis Thaliana] (GB:Q9FVX1); similar to glutaredoxin, putative [Arabidopsis thaliana] (TAIR:AT5G20500.1); similar to hypothetical protein [Thellungiella halophila] (GB:ABB45843.1); contains InterPro domain Thioredoxin-like fold (InterPro:IPR012336); contains InterPro domain Glutaredoxin, eukaryotic and viruses; (InterPro:IPR011899); contains InterPro domain Thioredoxin fold (InterPro:IPR012335); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Glutaredoxin subgroup (InterPro:IPR014025) Range:  from: 29078737    to: 29079690    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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