Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                       <---------ARR14(2)        ----------->RAV1(1)                                                 ------->MYC3               ------>ZmHOX2a(1)           --------->ARR14(2)                    <-------MYC3           --------->ARR14(2) --------ANAC58                          ----------->GT1                <---------ARR14(2) --------ANAC58  --------->ZAT2    --------->MYB46(3)--------->ARR14(2)------>MYB83 -----DOF2 <---------ARR14(2)     >>>>>>>>>>>>>>>>>LFY                 ------>MYB46(1)      ---------   tgcttctactacatatccaagcttacaatacccattaaccaatgtgttaaacgtgtatatgtctggagaaaccaaatcctccaacatttcagtataaagt  29074300                                                                                                   --                                                                                                   --                                   ------->TEIL                                                    --                      --------->GLK1(2)                                                            --                      <---------ARR14(2)         <---------REM1(1)                             <-----                      <-----------ARR10--------->MYB52(1)                        <---------HSFB2a(2)                      <---------ARR11(1)        <---------YAB1              <---------AHL20(2) <-----                      --------->ARR14(2)     <---------YAB1                --------->AHL20(2) <------ ->DOF2           ----------------->AGL2    <---------GLK1(2)<------ZmHOX2a(1)   --------->HSFB2a(2)   ctcttcatttcttcgactaatccaaatctagctaatgaactcaacagattattgtagcatttaggagtaagtttatatttaatctcgaagctatcacctt  29074400                                                                                     --------------->AGL15                                                                                    --------->ANAC58                                                                                    <----------------                                                                                    <---------At4g35610                                                                      ------>ZmHOX2a(2)                                                                     <------ZmHOX2a(2)                                                                    --------->ARR11(3)     <---------TOE2(3)                                                                    <---------ARR11(3)     --------->DAG2 ------->ANAC58          ------->GAMYB--------->ANAC58            <---------YAB1    <---------------- ------->ANAC55(2)      <---------MYB52(2)                   <--------HAHB4         --------->bZIP60(2) ------->ANAC46         --------->MYB46(3)          <---------At4g35610             --------->ANAC58 ------->ANAC58       ----------->RAV1(1) --------->ANAC58   --------->YAB1 ------>ZmHOX2a(2) -----DOF2           --------->MYB46(3)   --------->ANAC58  <---------YAB1  ========================= ----DAG2      --------->GLK1(1)      --------->ANAC58  <----------DOF2   --------->ARR11(3)        < ---DAG2 ------>ZmHOX2a(1)   ---------->DOF2        --------->At4g35610   <---------ARR11(3)---------   tacgcattgtcctacagaaatcaacaacaaacaaagcgtctcgcactgaattgcagctctttatcattaagatcgtgatcttaggcacctcataaggtat  29074500                                                                       --------->CCA1(2)                                                                       ==============================                                                                       <------ZmHOX2a(2)                                                                      --------->AGP1                                                                      --------->ARR11(3)      <------NtERF2                                          <---------ARR14(2)            --------->ZAT2      --------->ZAT14                                        --------->ARR14(2)--------->HSFB2a(2)      <---------ZAT14                                     <------MYB83<---------ARR11(3)   <---------ZAT2      --------->At4g35610                                 <------MYB46(1)      <---------HSFB2a(2) ------>ZmHOX2a(1)                               <----------DOF2     --------->GLK1(1)     <---------At4g35610 -AGL1<---------ZAT2                            <---------ANAC58     <---------GLK1(1)     --------->At4g35610 -AG  <---------At4g35610    <---------ANAC46 <---------YAB1<---------GLK1(1)  --------->LBD16 =======HOX2a_HOX2a          <---------ANAC55(2)<---------ANAC58 --------->LBD16   --------->GLK1(2) ---------LBD16       ---------->DOF2   <---------TOE2(3)--------->MYB46(2)--------->ARR14(2)      <- -->GT1             --------->MYB46(3) --------->MYB52(1)--------->MYB59   <---------ARR14(2) <------   ttcctggctgcagagaagagtaaccaaagacgcgtatgaagtaacgttgtgcttgaagtttggtatccgagagatccaatccgagaaactgagagctgtc  29074600            ----------->GT1            <---------ANAC58            <---------ANAC46      <---------YAB1   <------ZmHOX2a(2)                                                                     <------MYB46(1)  --------->ARR11(3)                                                       --------->KAN4(1) <------ZmHOX2a(1)                                          --------->ARR11(3)           <------MYB83 =======HOX2a_HOX2a                                         <---------ARR11(3)          --------->MYB59 --------TOE2(3)                                           <---------RVE1(1)      ----------------->AGL1 -----HVH21 <---------ANAC58           ----------->GT1<--------P           <---------KAN4(1)   tgaggatcaagattgagtgaaaacagagaagagacatgagaaggtgtatagaaggggtaagagattttagagatggattgttctgccaatttggttcgga  29074700                                                                                         <---------MYB46(3)                                                                                        --------->ALFIN1                                                                                        <---------ANAC46                                                                                       <-------GAMYB                                                                                       --------->At5g28300                                                                                       <------NtERF2                                                                                      <---------MYB46(3)                                                                                      <---------DEAR3(2)                                                                                     <---------DEAR3(1)                                                                                     <---------ANAC46                                                                                     --------->ALFIN1                                                                                     <---------DREB2C(2)                                                                                     <---------AtMYB61                                                                                    ------>NtERF2                                                                                    <------NtERF2                                                                                    --------->ATERF1(1)                                                                                    <---------ABI4(1)                                                                                   <---------RAP2.3(1)                                                                                  <---------RAP2.6(2)                                                                                  <---------RAP2.3(2)                                                                                  <---------RRTF1(2)                                                     <---------------AtSPL8       <---------DEAR3(1)                                              <-------GAMYB                      <---------LBD16                                           <---------At4g35610                  --------->ALFIN1                                           XXXXXXXXXXXXXXXXXXXX>MIR869.2 <---------At4g35610                  --------->ANAC58         --------->At4g35610    <----------DOF2<-------TEIL     <--                  --------->ANAC58<--------P <---------MYB46(3)<-----------GT1--------->CCA1(2)   <--                <---------AtLEC2----------->GT1   <---------TOE2(3)      --------->At4g35610 <-------   gacaattgagagtaatcggcatggaagattagaggggttagactctgctgttgagatagtacttgtaactttgtaagcagagatgcggcggtggataatg  29074800                                                                          --------->At5g28300                                                                     ----------->HVH21                                                               <---------MYB52(1)                 ---                                                              <-------GAMYB                       ---                                                             <---------MYB46(3)                ------    <---------LBD16                  --------->CCA1(2)       <---------DEAR3(2)                ------  ----------->HVH21                 <---------ARR14(2)       --------->MYB55(2)         <------------ -------ANAC58      <------NtERF2   --------->ARR14(2)      <---------DEAR3(1) <---------------AtSPL3 -------ANAC58     --------->LBD16----------->ARR10         <---------TOE2(2)--------->MYB52(2)------ --ICU4          <---------LBD16 <------ZmHOX2a(1)        <-----------HVH21<--------P   -------------   gccttcgacggagaaggtagccggaagaagtagaaggagatttggaagtagtaatctcatcgtcggttgattcgacggtaagttgtacttccagttcaag  29074900                                                  <---------LBD16                                           --------->TOE1(3) ------>MYB52(1)                           --------->TOE2(3) -------->RAV1(1)                       --------->ARR14(2)           <------MYB83 --->ANAC46                             <---------ARR14(2)           <------MYB46(1) --->ANAC58           ------->TEIL   --------->YAB1                 --------->MYB59          -------- ---AGL15          <---------YAB1  --------->ANAC46               <---------MYB52(1)         <------- --->ANAC58 <---------TOE1(3)      --------->ANAC58 --------->LBD16 --------->MYB46(2)   <---------AHL20(2) -->AGL15   <---------TOE2(3)      --------->ANAC58--------->ANAC46<---------MYB55(1)    --------->AHL20(2)   caacagtagggtttagggtttatgaatcagtgaatgcaagcaaaacctcaaacccggtacaatgctacgtttggtattctgcattggtttattaattaaa  29075000                                 <---------MYB46(3)                                <---------MYB52(1)                               <---------At4g35610                               <-------GAMYB                           <-----------HVH21                           <-----------TGA1                           --------->TOE2(3)             --------------->AtSPL8<---------ANAC46            <---------ANAC58  --------->MYB52(2)            <---------ANAC58<---------MYB52(1)       --------->TGA1a    --------->ANAC46       ================================MYC_MYB                              <-----------RAV1(2)       --------->O2       --------->ANAC58                                 <---------MYB52(1)     ---       <---------TGA1a    --------->bZIP60(2)                             <-----------HVH21   -------       <---------O2       --------->ANAC58                       ------>NtERF2               <------- ->AHL20(2) <---------ANAC46--------->TGA2(2)                   ----------->HVH21            -------- --AHL20(2)<-----------------------TaNAC69(2)                  --------->LBD16         --------->ANAC55(2)   cccaaactcaagtggcatgtacaatactacgtcagttgtttgtataaaacgacagcgtttgaaaccgcgactggtccgtcagggtatatatgtaatatat  29075100                            --------->GLK1(1)                         <----------DOF2                            <---------GLK1(1)                     ------>ZmHOX2a(2)                            <---------ARR14(2)                   <---------GLK1(1)                    <---------WRKY38(1)                         <---------ARR11(3)                    <---------WRKY12                         --------->HSFB2a(2)          ------->TEIL      --------->ARR14(2) --------->TOE2(3)--------->ARR14(2) ------>ANAC46      <---------WRKY45        <---------CCA1(2)<---------HSFB2a(2) -->CCA1(2)        --------->WRKY18(1) <-----------GT1--------->RVE1(1)            *TSS --AHL20(1)        ------------>CBF   <-----------GT1--------->ARR11(3)         --------->ARR14(2) ->ARR11(3)  <---------AHL20(2) ------------>CBF     <---------ARR11(3)         <---------ARR14(2)---   acgataaacatgtattttatggtcaatgcgaattcccaattttcccatttcttaaaatctcttctcgatctcctttgtttccgatttgccggtcttcgaa  29075200  Previous    Next  AGI:  At1g77340.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G65560.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46395.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN80799.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 29073237    to: 29074722    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g77350.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO47891.1) Range:  from: 29075183    to: 29076793    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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