Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    <--                                                                                                -----                                                                                               ------                                                                                               ------                                                                                               ------                                                                                               <-----      <------ZmHOX2a(2)                                                                    ------>MYB46(1)      <---------YAB1                                                                     <---------MYB111(1)     <---------ARR11(3)                                                           <------ZmHOX2a(1)     --------->ARR11(3)                                                     ------->GAMYB<---------MYB59 <------ZmHOX2a(1)                                                       --------->MYB52(1)------>MYB83 ---------RAV1(2)                                                        --------->YAB1 --------->ANAC55(2) ----NtERF2                                 --------->MYB46(3)        --------->YAB1    ------------- --->ZAT18                        <---------TOE2(3)  -------->P---------->DOF2<------ZmHOX2a(2)------   gcaggaagatcattaagagacttcatagtctaaatcaaggttttcaacaaatcgcaacctgcaaacaaagaacaataacgatcaggacatacctaatccg  29006600                                       ------>ZmHOX2a(1)                                      --------->TOE1(2)                                     ------>ZmHOX2a(2)                                            <--                          --------->DAG2                                                     <------- --------->YAB1          ---------->DOF2  --------->LBD16                                    <------- -------ICU4         --------->YAB1 <------ZmHOX2a(2)                                    --------->LBD16 ---->LBD16         <---------YAB1 --------->ARR11(3)                                  --------->HSFB2a(2) --->TOE2(3)--------->HSFC1(2)     --------->ARR14(2)                                <------ZmHOX2a(2) --->ANAC55(2)    --------->YAB1   <---------ARR11(3)                               <---------ARR14(2) ----->GT1  <---------HSFC1(2)     <---------GLK1(2)                                --------->ARR11(3) ----ANAC55(2)   <---------YAB1    <---------ARR14(2)                               --------->ARR14(2) ---->AG   --------->ANAC58        --------->AGP1<---------TOE1(3)       ------>NtERF2------>ZmHOX2a(2) --->ANAC46--------->ANAC58  ----------->HVH21   <---------TOE2(3)      --------->ANAC46--------->LBD16   taattacaacaacaagcttctgataataaaagtgacagatcctccgaaattagggttttctagcgataaactcgacgcgagcattagatcccgaataatt  29006700                          --------->ARR14(2)                        <------MYB83                      <--------P                                                             --------               --------->ARR14(2)                                                            --------      --------->GLK1(2) <------MYB46(1)                                            <---------ETT(2)   <---------AHL20(2)<---------ANAC46                                              <----------ID1 ---   --------->AHL20(2)<-------GAMYB                              --------->ARR14(2)=================== -------YAB1   <---------ARR14(2)                              <------ZmHOX2a(1)  <------ZmHOX2a(2) --ICU4        --------->ARR11(3)                              ==========================HOX2a_HOX2a -ATHB1        --------->GLK1(2)      ---------->DOF2        <---------TOE2(3)    ===================   ccgattaaaatctgaaaaatctgggttggattcactacaatagagcggaaaacaagtagggtttaggaatcgctgaacatagagatcgacaaaaacctaa  29006800                  --------->DAG2                 ---------->DOF2            ----------->GT1            --------->ANAC58         <------ZmHOX2a(1)      <------ZmHOX2a(1)   <-----------RAV1(2) ----------->RAV1(1) ->TOE2(3)  --------->ANAC58                                                                   ------ ->TOE1(3)---------->DOF2                                    <------ZmHOX2a(1)                ------- --------------------->ANAC81                    <---------MYB52(2)                  --------->GLK1(2) ===============HOX2a_HOX2a           --------->GLK1(1)    <---------TOE2(3)        <---------GLK1(2) ============HOX2a_HOX2a      ------->TEIL      --------->At4g35610     <---------LBD16     ---------   aaacaacaggaggaaagcaaaaagcagaattgaatctgagaaatcgaagaagctaacctctgaggaaactaatcgacgggaagagagattctgagaaagg  29006900                    --------->DEAR3(1)                   --------->ATERF1(1)                   <------NtERF2                  <---------ATERF1(1)                  --------->At4g35610                  ------>NtERF2                 <---------ANAC46                 --------->DEAR3(1)                --------->RRTF1(1)                --------->RAP2.3(1)                --------->ATERF1(1)                <------NtERF2               <---------ATERF1(1)               <---------RAP2.6(1)               <---------RRTF1(1)               <---------ERF1               ------>NtERF2               <---------DEAR4(2)               <---------RAP2.3(1)               <---------ORA47(2)              <---------RAP2.6(2)              <---------RRTF1(3)              <---------RAP2.3(3)              --------->ALFIN1              <---------RAP2.3(2)                                                        <----------DOF2              <---------RRTF1(2)         --------->ANAC58                               <---------DAG2              <---------DEAR3(1)         --------->ANAC58                         --------->ALFIN1             --------->ATERF1(1)       --------->MYB52(1)           ---------->DOF2--------->REM1(2)             <---------ABI4(1)        ------->GAMYB            ----------->GT1    ----------->HVH21         <---------ANAC58             <---------SPL7         --------->LBD16    <---------ANAC46 ----->GT1  <---------ATERF1(1)      <---------MYB52(2)      <---------LBD16    <---------ANAC58 -->DAG2 <---------ANAC58            --------->MYB46(3)    <---------LBD16      <---------ANAC58   <- ->DOF2--------->ALFIN1            --------->MYB52(1) <----------DOF2    <---------GLK1(1)        <--   tgaaacgatgtgcgaggcggcgcagaccgatgaagaacaacgaacggaagtgaagcctttttctggggaaaaaagaaatcgggcgtgaagccttttctag  29007000                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                <----                                                                                               <xxxxx                                                                                             --------                                                                           --------->ANAC46  <-------      <------ZmHOX2a(1)                   --------->ANAC58   <------MYB46(1)          ---------->DOF2 --------->ATHB12              <------------CBF              <---------DEAR3(2)    <----------ID1  <x -------P            ---------->DOF2      --------->ANAC46   ----------->GT1     --------->MYB52(1)-- -----GAMYB <----------ID1   *TSS         --------->ANAC58   <------MYB83  <----------ID1 <------ZmHOX2a(1)   ggttgataggattaacaacaaaaaaaaggaatcaattgtcttatacgcagtgtctatgtaagtcggtttaaaaatagacgaaaaaacgaaaaggataacg  29007100          <xxxxxxxxxxxxxxxxsmallRNA(i)          <-------TEIL         --------->CCA1(2)         --------->GLK1(2)        --------->ARR11(1) <------NtERF2       <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)     <xxxxxxxxxxxxxxxxsmallRNA(s)    <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <xxxxxxxxxxxxxxxxsmallRNA(s)   <xxxxxxxxxxxxxxxxsmallRNA(s)   <xxxxxxxxxxxxxxxxsmallRNA(i)                                 <xxxxxxxxxxxxxxxxsmallRNA(i)   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                           <xxxxxxxxxxxxxxxxsmallRNA(s)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                   <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                     --------->MYB46(3)  <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                   xxxxxxxxxxxxxxxx>smallRNA(s)  <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxsmallRNA(i) <xxxxxxxxxxxxxxxxsmallRNA(se3)xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ------NtERF2            <----------CDC5              <xxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)               <xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           --------->ANAC46 xxxxxxxxxxxxxxxxsmallRNA(i)  <xxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ---------->RAV1(2)    ------>NtERF2               --------->ANAC58 xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    --------->ANAC58  <xxxxxxxxxxxxxxxxxsmallRNA(si3) -------HVH21         --------->LBD16        --------->ANAC58  <xxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxsmallRNA(s)<-----------HVH21  --------->At4g35610 <xxxxxxxxxxxxxxxxxxsmallRNA(se3) ->MYB52(1)          <---------ANAC46     --------->ZAT2<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     -- --DOF5.7(2)        <---------LBD16  ------->TEIL  --------->ANAC58  ---------->DOF2             ---- xxxxxxxxxxxxxxxsmallRNA(s)--------->ATERF1(1) <xxxxxxxxxxxxxxxxsmallRNA(s)            <---------AHL20(2) ---->NtERF2    <xxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------ALFIN1 ------>NtERF2 *TSS   --------->AHL20(2)   tcgcctgagagattcgaactctcgcgggcagagcccatgtacttagcaggcacacgccttaaccactcggccaaagcgacttattgtttttaaatcgaag  29007200                                                                       <------------CBF                                                                      <---------AtLEC2                                                                <---------ICU4                                                                --------->ATHB51                                                                <---------AHL20(2)                                                                --------->ATHB12                                                                --------->AHL20(2)           <-----------GT1                                     --------->ICU4          --------->ARR14(2)      <---------AHL20(2)                                       <---------YAB1          <---------ARR14(2)      --------->AHL20(2)   <---------DAG2                    <---------ICU4            --------->GLK1(2)      <-----------TBP      <----------DOF2                   <--------HAHB4           <---------GLK1(1)    <-----------TBP       <---------ANAC58                  <---------YAB1         --------->YAB1 --------->GT1            <---------ANAC58                  --------->ICU4    ------>ZmHOX2a(1) ------>DOF2        --------->ALFIN1      ------------>CBF--------->YAB1     --------->TOE2(3)   aaagttatatatataactataggtgttggctttttgatatatacaacaattctgagcatctcataattatttgcattgtccttaatgaaaatccgtctca  29007300                                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                           --------->REM1(1)                                                                          <-------TEIL                                                                       <------MYB46(1)              -                                                                      --------------->AtSPL3        <                                                                      <---------------AtSPL3       --                                                                      <---------AtMYB61          <---                                                                      <---------------AtSPL8    <xxxx                                                                      --------------->AtSPL8    <xxxx                                                  ---------->DOF2    <--------P             ---------                                         ---------->DOF2         <------MYB83               <--------               <---------ANAC46     ----------->GT1--------->DAG2<------MYB46(1)        <---------ZAT14               <---------ANAC58    <---------TOE1(3)         --------->GLK1(2) xxxxxxxxxxxxxxxxxxxxxx               <---------ANAC58    <---------TOE2(3)     --------->YAB1<------MYB83     --------->ZAT14   aacacattcccatagtttcgtttaaaatactgaattcaaggttaaaagaaaaaaaagtataagaatttggtgttggtacatctcaactggtatactgtta  29007400                                         --------------->AGL15                                        ----------------->AGL1                                        ----------------->AGL2                                        <-----------------AGL1               <------MYB46(1)          ----------------->AGL3               <------MYB83             <xxxxxxxxxxxxxxxxsmallRNA(i)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               ----------->GT1 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------------AGL15 -------->AtMYB61              --------->GLK1(1) <------ZmHOX2a(1) ---------ALFIN1               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ------->MYB46(3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <---------AtMYB61 --------GT1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                     --------->ANAC58 xxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       --------->YAB1 -->GT1---------->DOF2--------->DAG2    <-----------------AG     <----------DOF2         --------->ANAC58 -ZAT6xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    ---------->DOF2 x>smallRNA(si3)     ---------->DOF2    ----------------->AG --------->MYB59--------->WOX13(1) <-----   aaccacctcgaaagggaaggtgaaaaagttcagaattcaagtaccaatagaggaaatactagttaggctttggtttgtctatcaaaactcaaagcaagtg  29007500  Previous    Next  AGI:  At1g77180.1    Description:  chromatin protein family. similar to Os02g0759800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048184.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65464.1); similar to GAMYB-binding protein [Glycine max] (GB:AAZ38969.1); contains InterPro domain SKIP/SNW; (InterPro:IPR004015) Range:  from: 29004512    to: 29007029    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g77190.1    Description:  pre-tRNA. tRNA-Ser (anticodon: GCT) Range:  from: 29007099    to: 29007180    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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