Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                    ------>ZmHOX2a(2)                                --------->ARR11(3)                                --------->ARR14(2)                            --------->At5g28300                <---------ATHB12                           ----------->GT1          --------->YAB1                        --------->MYB52(1)         <---------ATHB12              <---------MYB46(3)<---------ARR11(3)--------->ANAC58             --------->ALFIN1   <---------ARR14(2)--------->ANAC46 ------ZmHOX2a(1) --------->MYB52(1)              --------->ANAC58 ------LBD16 <---------ANAC46<--------P  ---------->DOF2 <-----------GT1         --------->ALFIN1   caggaatttgtagcggtggataacgaaaacggtagatcgtgaacaaagctccaagcattatacaaatcaacacaagtttcagagtgttgaacttgacacc  28985800                                             ----------->RAV1(1)                                          --------->ANAC46                                          --------->ANAC58                                       --------->ZAT14                                       <---------ZAT14                                <---------At4g35610   --------->MYB52(1)           --------->MYB52(1)                       ------>ZmHOX2a(1)  --------->ANAC58           <---------ARR11(3)   -----------                    ------>ZmHOX2a(1)  <---------REM1(2)           --------->ICU4  ----------->RAV1(1)             <---------GLK1(1)  --------->At4g35610  --------->TOE1(2)        --------->WOX13(1)        --------------------->WRI1 --------->ZAT6   <---------MYB52(2)     <-----------HVH21>>>>>>>>>GATA-1   cttctcaattctttgaaatctcctcctacttgtcttctcactacacacaacaaaacaaacgaatgagtcattatctatgtcaatccaacagatagataaa  28985900                                                        --------->LBD16                                                       --------------->AGL15                                                       --------->HSFB2a(2)                                                       --------->HSFC1(1)                                                       <---------HSFB2a(2)                                                       ==============================================                                                       <---------HSFC1(1)                                                      ----------------->AGL1                                                   --------->GLK1(1)                                                   <---------GLK1(1)                                               ------>ZmHOX2a(2)                                              --------->CCA1(2)                                              <------ZmHOX2a(2)                                             --------->ARR14(3)                                             <---------ARR11(3)                                             <---------AGP1---------->DOF2                                             --------->ARR11(3)                                             <---------ARR14(2)                                             --------->ARR14(2)         --------->ALFIN1      <---------ANAC58                       --------->GLK1(2)         <-------MYC3               ---      <---------ANAC46                       <-----------ARR10         ------->MYC3             <----    ------>ZmHOX2a(2)                        <---------ARR14(3)  --------->WOX13(1)           ------- >GT1 <---------ANAC58      --------->YAB1 ----------->ARR10    <---------WRKY12<---------At4g35610 <   catagatcgcttgtgaaacacatttctgaatcaaaaacaaaatcgaagatctgatttccagaaaagtcaaccatgtgtgtgaagctactaagttaactaa  28986000          <---------ZAT6     --------->ANAC55(2)     <---------ANAC55(2) =========MADS_MADS                             >>>>>>>>>TBF1 ------>YAB1                              --------->YAB1 -----TOE2(3)                          --------->YAB1                                  <---------ANAC58 -------->AGL15    ------->TEIL   <---------ATHB12                   --------->HSFB2a(2) ---------------AtSPL8           <---------TOE2(3)  <----------ID1<----------DOF2      <---------ANAC58   gaatagtacgtagtgttcatgaaactagagaaactaatgaagaataagaagaagaagacgaagactaactttgagaacgagagtcgatgtcttgactcca  28986100                                                 <---------GLK1(2)                                        <------MYB83  --------->YAB1                                        <---------MYB46(3)                                        <------MYB46(1)                --------->YAB1          <---------DEAR3(2)               <---------YAB1        ------------>AtMYB77     ----------->RAV1(2)           <------MYB83     --------->SPL7    <---------HSFB2a(2)           ---------->DOF2           ----------->GT1 <---------MYB52(1) --------->HSFC1(1)        ----------->RAV1(1)           <------MYB46(1)--------->LBD16     --------->HSFB2a(2)----------->GT1        <------ZmHOX2a(1)--------->ANAC46    <---------ANAC46 ======================RAV         -----      <---------TOE2(3) <---------LBD16<---------DEAR3(1)<---------ICU4<----------ID1           <----   tgggacttgaggaaggtatcatcgtctccgtaagaccagggtcggtttcgagaatttcataatcgcctggtaaacaacaaaagacgagacattttaggga  28986200                                              <---------ANAC55(2)                                              <---------ANAC58                                              <---------ANAC46             --------->AHL20(1)               <---------ANAC58               --------->LBD16             <---------AHL20(2)               --------->ANAC55(2)           <---------ANAC46             <---------AHL20(1)        *TSS  <-------TEIL                   <---------ANAC58        -             --------->AHL20(2)        --------->MYB52(1)           --------->HSFB2a(2)            <-            --------->AHL20(2)      --------->ANAC58                <---------HSFB2a(2)         <----      <------ZmHOX2a(1)        --------->ANAC58                 <---------RVE1(1)              ------     ----------->GT1           --------->ANAC46                --------->ARR11(3)              ------ ---->ARR14(2)                 --------->ANAC58                <---------ARR11(3)         <---------MYB52(2) -----ARR14(2)<---------AHL20(2)    --------->ANAC58  <------ZmHOX2a(1)     <---------ANAC58 ------->TEIL   tttgggaaggagaaattaatttgattttggaccaaggcacaaaacggtgcgtattaggaaaatgagatttttagaagtccgtgttttgcaaaacgaacct  28986300                                                                                                 <---                                                                                                -----        <---------MYB52(1)                                                                      <----       --------->ANAC55(2)                   <---------AHL20(2)                              <-------       <---------ANAC55(2)                   <---------AHL20(1)                             <-------- -------->ANAC55(2)         <---------ALFIN1 --------->AHL20(2)                            --------->ANAC46 ----------------AGL1 <-----------GT1        --------->AHL20(1)                     ----------->GT1 ------DOF2          <-----------GT1 --------->ATHB12                           <---------SPL7<------ --->TOE2(3)        <---------AHL20(2)      --------->AHL20(2)----------->GT1 <---------------AtSPL3 --->TOE1(3)      <---------YAB1   <---------TOE2(3)<-----------GT1      --------->ANAC46<-----------GT1   ttacttatcaggtatttgttattttaacccctactctaatgtttgaataaattttaaccagaaaacgaaaatcacacacagtagtacggttttacgcggt  28986400                           <------MYB83                                    <---------ARR11(3)          --------->ZAT2   <------MYB46(1)                                 --------->ARR11(3)          --------->At4g35610                                             <---------GLK1(1)      --------->GLK1(2)   <---------AtMYB61                      --------->ANAC46 <------ZmHOX2a(1)  --------->ALFIN1                            <---------HSFB2a(2) ------MYB46(3)  <---------DEAR3(1)               ---------->DOF2--------->LBD16 ---->ALFIN1  --------->DEAR3(1)              <xxxxxxxxxxxxxxxxsmallRNA(s)--------->GLK1(1) -----AtMYB61 ----------->HVH21         --------->ANAC46        --------->HSFB2a(2) --DEAR3(1)  --------->At4g35610        --------->ANAC58        <---------------AGL15 -LBD16   <---------At4g35610           --------->ANAC58        --------------->AGL15 ---ANAC46<---------ZAT2 <--------P   <---------ALFIN1         ----------------->AGL2   ggaggaagaatcagcagcgacggtggagttggtctgagtctcaccccaatgccaaagcatactctcccagaaacagaaatcttcaaaacaagtcgtaagt  28986500                                                                              ------>NtERF2                                                                             <---------RAP2.6(2)                                                                     <---------ATHB12                                                                    --------->ANAC58                                                               --------->PCF2<---------ANAC46           ===============HOX2a_HOX2a                          <------ZmHOX2a(2) <----------DOF2           --------->YAB1                               ---------->ARF1      <---------ANAC58           ------>ZmHOX2a(2)                       <---------At4g35610       <---------ANAC58         <---------ARR11(3)                        --------->ZAT2   --------->ANAC46         --------->ARR11(3)                        <---------ZAT2   --------->ANAC58               <-   <---------YAB1                           <---------DAG2    <---------ARR14(2)<---------DAG2   ---- <---------CCA1(2) ------>ZmHOX2a(1)        <----------DOF2   --------->ARR14(2)<----------DOF2  <---   ctcttatctttgatcttaatcctccaatgtccgtctctgtaattcgctttctcagcttgtctccgatcccactcaagttgcgccttttgtttcgaactca  28986600                                    --------->ZAT14                                    --------->ZAT18                                    <---------ZAT18                                 <---------ANAC58                                          ------->GAMYB                                 <---------ANAC46                                         --------->ANAC58                                 <---------ANAC58            <----------DOF2              --------->ANAC46                                <------NtERF2            <---------ZAT18                  --------->ANAC58 --------ETT(2)                <-----------HVH21        <---------ANAC58                --------->MYB52(1) ----->At4g35610           <------NtERF2                <---------ANAC58               --------->TOE1(2) ------At4g35610 <---------ARR11(3) <---------ZAT14   <---------ANAC46                --------->MYB46(3)   gtagacaaaacctctgcaatttcttaggcatcgcgtcgtgcactctccaccaagttttgtgtgcttcatcgctcgcgaattgatggtatccaacgacatt  28986700  Previous    Next  AGI:  At1g77130.1    Description:  PGSIP2 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 2); transferase, transferring glycosyl groups. similar to PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G18660.1); similar to PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G18660.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO46444.1); similar to secondary cell wall-related glycosyltransferase family 8 [Populus tremula x Populus tremuloides] (GB:AAX33316.1); similar to unnamed protein product [Vitis Range:  from: 28983788    to: 28986239    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g77131.1    Description:  pseudogene of PGSIP, glycogenin glucosyltransferase Range:  from: 28986308    to: 28988357    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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