Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                 <---------ICU4                                                               --------->YAB1 ----------->GT1      --                                                              <---------ATHB12<---------MYB46(3)-----                                                             ------>MYB83---------->DOF2        <----   ---------->DOF2              --------->YAB1               ------>MYB46(1) --------->ALFIN1   ----- ----->WRI1 <-----------TGA1   <-------TEIL                <---------MYB59--------->DAG2        <----   gaactcaaagtcatcgtcatcgtcttcgtcatattcatcatccagtagcaactctgtagaaccaaacatcaccagaaaagtggttgaattcaaactcaag  28983200                                                                             --------->HSFB2a(2)        --------->YAB1                                               ------->TEIL  <---------ARR11(3) ------->At4g35610                                                  <---------GLK1(2)               < ---->ZAT2   --------->At4g35610                           <---------GLK1(2) <---------HSFB2a(2)   << -----ZAT2 --------->YAB1                                <---------YAB1     <---------LBD16      <xxx ---->At4g35610                   --------->DAG2    --------->DEAR3(1)     <---------LBD16   ------>ZmHOX2a(1) -----At4g35610                  ---------->DOF2 --------->ANAC46   <---------CCA1(2)      <---------   ctgcagagaattatcagattacattcaaacaaacaaaaagggaaccaaaacacaccgtcttgattctcttgaatctcttcgggaagaactatctcctctt  28983300           <<<<<<<<<TBF1        <<<<<<<<<TBF1    --------->YAB1     <<<<<<<<<TBF1      --------->ICU4  <<<<<<<<<TBF1  <<<<<<<<<TBF1                                                                     <- xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            --------->ARR14(2)                    <---------ANAC58 <<<<<<<TBF1  <<<<<<<<<TBF1                      <---------ARR14(2)                    <---------ANAC58 xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <----------DOF2                                <---------ANAC46 ---------------ANAC81  <---------ATHB12<---------DAG2     ---------->DOF2       ------>ZmHOX2a(1) <-   cttcttcttcttcttcttcttcttcaatgatcaactcttcgactttattcggtttcggttcgaaagtactcgttttattcttcctcttcgcgtgagtttt  28983400                                                                               <------NtERF2                                                                               <---------LBD16                                                                              ------>NtERF2                                     <---------GLK1(1)                        <---------RRTF1(1)                                  --------->LBD16                             <---------ERF1                                 --------->LBD16                              <---------RAP2.3(1)                                <------NtERF2                                <---------RRTF1(3)                                <---------LBD16                              <---------DEAR3(1)                               ------>NtERF2                                 <---------RAP2.3(2)                               <---------ATERF1(1)                           <---------RRTF1(2)                              --------->DEAR3(1)                             <---------RAP2.3(3)                              <---------DEAR3(1)                             <---------ATERF1(2)                             --------->RAP2.3(1)                             --------->ATERF1(2)                             --------->ATERF1(1)                          ----------->HVH21                             <------NtERF2                             --------->ATHB12                            ------>NtERF2                          --------->ARR14(2)      <---------ANAC58                            <-----------HVH21                      <---------ARR14(2)      <---------ANAC58                            <---------ATERF1(1)                 --------->ANAC58      --------->ATHB12                            <---------RAP2.3(1)                 --------->ANAC58     --------->ICU4                           <---------DEAR3(1)                  --------->SPL7<---------RAP2.6(2)                           --------->DEAR3(1)                 --------->MYB52(1)<---------ANAC46    --------->DAG2    --------->MYB52(1)                     <---------SPL7 --------->RAP2.6(3)   ---------->DOF2 --------->ANAC58  --------->GLK1(1)     <------NtERF2 <---------WOX13(1)<---------ANAC46 --------TOE2(3)   --------->ANAC58 --------->ARR14(2)    <------------------SPL14<------NtERF2     - --------TOE1(3)   --------->ANAC46<------NtERF2         <---------DEAR3(1)--------->MYB52(1)  <-----   gaaggtaaagtttggagtccgacgaaacggcgtcgccggaaatccaaaacgaagactcgtcgtcgaacggaaacgattgacggcggaaagattgcttatg  28983500                                 <---------YAB1                                    >>>>>>>>>TBF1                         ------>NtERF2                                   <---------MYB52(1)                        ----------->HVH21                               ------>NtERF2      --------->ANAC58  <---------ETT(1)                                --------->LBD16      --------->ANAC58  --------->ANAC46                               --------->ANAC46 --------->DOF2         --------->LBD16   --------->ETT(1)             <---------ETT(1) ----YAB1              --------->LBD16--------->MYB59<----------ID1   <---------LBD16 >>>>>>>>>TBF1   ctaaaagcaggcaaaactgaaattccccgacaagtctgattcggtcggaaacagaacaacaaatccatcttctccggcaagtgaagaagaagaagagacg  28983600                                                                                              -------                                                                                        <---------DEAR3(2)                                                                                        <------MYB83                                                                                        <------MYB46(1)                                                                                       --------->MYB59                                                                                     <---------MYB52(1)                                                                                   <------MYB83<-----                                                                                   <---------DEAR3(2)                                                                                  --------->MYB59                                                                                <---------MYB52(1)                                     *TSS                                     <---------MYB46(3)                                    ----------->GT1                      <---------AHL20(2) <--------        <-----------GT1           <---------LBD16                       --------->AHL20(2)--------->ARR14(2)     --------->ARR14(2)--------->HSFB2a(2)       <---------TOE2(3) ------------>CBF<------MYB46(1) <---------LBD16    <----------DOF2<---------RAP2.6(2)    ------>ZmHOX2a(1)<-----------GT1<---------ARR14(2)   ttctctggatttactatgccatcttttggaatggaatgcggctaaaaaactatggttctcctcactaaaatcaattttatcggttcggttcggttccggt  28983700                                 ------->GAMYB                                --------->ANAC58                                      ------>ZmHOX2a(1)    --------->YAB1  <----------DOF2       ---------->DOF2                       <---------At4g35610 -->LBD16   --------->DAG2      --------->ANAC58                              --------->REM1(1)  <--- ----MYB52(1)   --------->WRKY12--------->ANAC46                             <-------TEIL      <----- -LBD16    ---------->DOF2    --------->MYB52(1)      <---------ZAT6   ---------->DOF2----------->GT1   tctcaaggataaataaagttgacttttatgtccaacggaataacaaaagccctctagttttaaaatttgaatgcaaagcttcatcttcctgtaaattctt  28983800                                                                                                   --                                                                                                  ---                                                                                                  <--                                                                                                  ---                                                   --------->ARR14(2)                             <--                                                   <---------ARR14(2)                             ---                                                <---------ANAC46             <----------ID1     -----                           <---------ICU4      <-------TEIL              --------->YAB1         -----              <----------DOF2                <---------ARR14(2)          --------->AHL20(2)     -----              <---------DAG2             --------->HSFB2a(2)          --------->YAB1            -----     <----------DOF2       --------->ATHB12  --------->ARR14(2)      <---------YAB1        <---------ARR14(2)   ---------->ID1         --------->ICU4 <---------HSFB2a(2)      ----------->GT1          --------->ARR14(2) ------AHL20(2)           <---------YAB1<---------LBD16         <---------At4g35610       --------->GLK1(1) -----DOF2   --------->TOE2(3)          <---------ANAC46        <---------ZAT2    ---------->DOF2----   tatttgtctttcattcctttatcccctcatgattacattgtttctgggattcgtatacaggtttcaagctgataataaaaaaacaaaagaacatatccaa  28983900          <------MYB46(1)          <------MYB83         <---------DEAR3(1)                                                             <------NtERF2       <---------ANAC58                                                                <---------MYB46(3)       <-------GAMYB                                                                  <---------ANAC46       <---------ANAC58                                                               <---------DEAR3(1)      <------MYB83                          --------->ANAC58                         <------NtERF2  -      <---------MYB46(3)                    --------->ANAC58                         --------->ATERF1(1) --------->RAV1(1)                  ------>MYB83                                     <---------ABI4(1) ---->GAMYB                         ------>MYB46(1)                                  ------>NtERF2  < ---------------AGL3              --------->AtMYB61                                 <---------RAP2.3(1) -------------->AGL2              <---------MYB111(1)                              <---------DEAR3(1) ---------------AGL2              <---------MYB59                                  <---------RAP2.6(2) -------------->AGL3        --------------->AtSPL8                                 <---------RAP2.3(2) ->MYB46(1)<------NtERF2    <---------------AtSPL8                                 <---------RRTF1(2) --->P<------MYB46(1) ----------->GT1     ---------->DOF2                   <----------DOF2      ---- ->MYB83<--------P   <------NtERF2--------->MYB46(3)         --------->ANAC58     <---------LBD16<--- ---->ANAC46  ---------->DOF2     <---------MYB46(2)         --------->ANAC58    <-----------RAV1(1)< ----->MYB46(3) --------->DAG2 <-----------GT1   ---------->DOF2          ----------->GT1      <-----   cccacatttggttggcgaaaggcagagtaatttgtaccaaaccagaaagccaaaagaattcacagggaagggagagcggttttatgcggcggtgatgaag  28984000    <---------MYB46(3)   <---------AtMYB61   <---------DEAR3(1)   --------->ALFIN1                                                    <---------HSFB2a(1) <---------MYB46(3)                                                   --------->ARR11(3) -------->ALFIN1                   --------->ANAC58                   <---------ARR11(3) ---------DEAR3(1)      <---------ZAT6       ---------->DOF2         --------->GLK1(1) ----->ALFIN1      <------MYB46(1) --------->ANAC46          ---------->DOF2 ------AtMYB61     <------MYB83    --------->ANAC58        <---------------AGL15 ---------AtMYB61  <---------MYB46(3)    <xxxxxxxxxxxxxxxxsmallRNA(s)<---------GLK1(1) ----bZIP60(2) --------->ATHB12  <---------ALFIN1         ----------------->AGL2                    <   tggtggtggtggaagaattgttggtagagttcgtctcaccccaatgccaaagcatactctcccaaaagcagaaatcttcgaaacaagtcttaagtctctt  28984100  Previous    Next  AGI:  At1g77122.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G69210.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO60882.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN61512.1); contains InterPro domain Protein of unknown function DUF150 (InterPro:IPR003728) Range:  from: 28982251    to: 28983637    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g77130.1    Description:  PGSIP2 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 2); transferase, transferring glycosyl groups. similar to PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G18660.1); similar to PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G18660.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO46444.1); similar to secondary cell wall-related glycosyltransferase family 8 [Populus tremula x Populus tremuloides] (GB:AAX33316.1); similar to unnamed protein product [Vitis Range:  from: 28983788    to: 28986239    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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