Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               --------                                                                                          <---------ANAC58                        <-----------GT1          --------->WOX13(1)                       <---------ANAC58          <---------ALFIN1                     <---------YAB1     <----------DOF2   <---------DAG2       --------->MYB46(3)  ------->GAMYB     <-----------GT1      <---------DAG2    <----------DOF2    --------->REM1(1)  <-----------GT1   <----------DOF2         <------------------------ANAC81<---- --At4g35610       <----------DOF2       <---------DAG2         ------>ZmHOX2a(1)------>ZmHOX2a(1)   gggactacaacaacactctctctttttaactgtctacttagtgctttttatcattcatttcatgtcctctttttctcttcttcctcctttttgcttattc  28952100                                                                                        --------->TOE2(1)                                                                                        --------->ANAC46                        <--------ATHB1                                                  --------->TOE1(1)                        --------->ATHB12                    ----------->GT1             ----------->GT1                       --------->ICU4                   --------->ZAT14      <---------ANAC58     <--                       <---------ATHB12                 <---------ZAT14      <---------ANAC58   -----                  --------->ANAC58               ---------->DOF2             <---------ANAC46   <---- ->KAN4(2)        --------->ANAC58            <---------------AGL15        ------>ZmHOX2a(2)   <----- -------GT1      --------->MYB59              --------------->AGL15       <------ZmHOX2a(2)    ------   tccatttcaaaatacttgttaggcaatgatttagacatttccattagaccctaaagagtatagagtttaaaacacgatcgcgtttggacctcgtaacatg  28952200                                                                          <---------YAB1                                                                         --------->AHL20(1)                                                                         --------->AHL20(2)                                                                         <---------AHL20(1)      <---                                                                         <---------AHL20(2)     <----                                                                        --------->YAB1          -----                                                                        --------->AHL20(2)    -------      <---------TOE2(3)                                                <---------YAB1       <--------  <----------DOF2                                                    --------->YAB1       --------->LBD16 -------WOX13(1)                                                     <---------ICU4     <---------LBD16 ---->ATHB12           <---------HSFB2a(2)                          --------->ICU4    <---------ARR14(2) -----ICU4             --------->HSFB2a(2)                          <---------YAB1    ------->TEIL ----YAB1          <-------GAMYB     --------->ANAC55(2)       ----------->GT1        --------->ARR14(2) --->ICU4  <---------MYB46(3)        <---------ANAC55(2)   --------->ANAC46        <---------YAB1<---   attgcattatggattgttgagcgttgcagaagaaataatacatatttcaagagactgatacagggaagttattattatattagctatgaatccggttaga  28952300         ------>MYB46(1)         ------>MYB83         -------->P        ------>MYB83        ------>MYB46(1)      --------->MYB46(3)                                                                       ------      <---------MYB59                                                                          <-----     --------->ANAC46                                                                          ------    <-----------GT1                                                                            ------   <-----------GT1                                       <---------ARR14(2)                    ------ ------RVE1(1)                                           --------->ARR14(2)                   <------ -----ARR11(3)                                  <-------TEIL                                 -------- ---->ARR11(3)          --------->YAB1         --------->CCA1(2)                            --------- ---->ARR10         ----------->GT1           --------->ARR14(2)                --------->GLK1(1)  <- -MYB52(1)         <---------TOE2(3)          <---------ARR14(2)                <---------GLK1(1) <-- ------CCA1(1) <----------DOF2   <---------CCA1(2)  <----------DOF2 <----------DOF2        <---------   tatttttacccaacctgttttatggataataacttctatctacttacagatacactttgaatacgcttaacttttgagttggatttcaaggtgagtcacg  28952400                                                                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                          <---------TOE1(2)        <x                                                                        --------->At4g35610        <x                                                                    <xxxxxxxxxxxxxxxxsmallRNA(s)   <x                                                                    --------->ZAT2                 <x                                                                    <---------O2                  <xx                                                                    --------->O2                  <xx                                                                    =================================                                                                  <xxxxxxxxxxxxxxxxsmallRNA(s)    <xx                                                            <xxxxxxxxxxxxxxxxsmallRNA(i)          ---                                                        <xxxxxxxxxxxxxxxxsmallRNA(s)             <xxx                                                      --------->LBD16  <---------DEAR3(1)        <xxx                                                      <xxxxxxxxxxxxxxxxsmallRNA(s)               ----                                                      <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <xxx                                                     <---------LBD16========================bZIP_DOF<                                                    <---------LBD16 --------->TGA1a              <xxx     <---------GLK1(2)                              <xxxxxxxxxxxxxxxxsmallRNA(s) ---------->DOF2 <xxx --->ANAC58                                        --------->MYB52(1)<-----------HVH21    <xxxxxxxxxx ----ANAC55(2)                                     <xxxxxxxxxxxxxxxxsmallRNA(s)  <xxxxxxxxxxxxxxxxxxx --->ANAC58                                        ===========================MYC_MYB     <xxxxxxxxxx --->ANAC55(2)                                     ------>MYB83  <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxx --->ANAC55(1)                                     ------>MYB46(1)<-----------RAV1(2)    <xxxxxxxxxxx ---LBD16     --------->YAB1                       -------->P   <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxx ->MYB52(1)  <<<<<<<<<ARR2                        ------>ZmHOX2a(1) <---------ZAT2       <xxxxxxxxxxx -->HVH21    <---------ATHB12                   <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxsmallRNA(s) -----ZmHOX2a(2)  --------->DAG2          ====================================bZIP_DOF <xxxxxxxxxxxxx ---------HVH21  ---------->DOF2          ---------->DOF2  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) <xxxxx --HVH21--------->YAB1               --------->AHL20(2)<xxxxxxxxxxxxxxxxsmallRNA(s)    <xxxxxxxxxxxxx   gatcacagaatcacaatcaaaaaggaaatggctaatgaaaaaaataaaggtcctaccgggagtcgaacccaggtcgctggattcaaagtccagagtgcta  28952500    --------->ANAC46    <xxxxxxxxxxxxxxxsmallRNA(le3)    <xxxxxxxxxxxxxxxsmallRNA(fl3)    --------->REM1(1)    <xxxxxxxxxxxxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxsmallRNA(se3)   <xxxxxxxxxxxxxxxxsmallRNA(s)   <xxxxxxxxxxxxxxxxsmallRNA(i)   <---------ZAT14   --------->ZAT14  <xxxxxxxxxxxxxxxxxsmallRNA(se3)  <xxxxxxxxxxxxxxxxxsmallRNA(le3)  <xxxxxxxxxxxxxxxxxsmallRNA(fl3)  <xxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxsmallRNA(se3) --------->ANAC46 <xxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxsmallRNA(l2) xxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxsmallRNA(se3) =====MYC_MYB xxxxxxxxxxxxxxxxxxxsmallRNA(le3) ------>MYB46(3)   --------------->AtSPL8 xxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxsmallRNA(se3) ---->P            *TSS xxxxxxxxxxxxxxxxxxxsmallRNA(i2)                  ----------->RAV1(2) xxxxxxxxxxxxxxxxxxxsmallRNA(se3)            <---------ANAC55(2) xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)            --------->ANAC55(2) xxxxxxxxxxxxxxxxxxxsmallRNA(si3)       --------->ATHB12                                            < xxxxxxxxxxxsmallRNA(si3)               <--------HAHB4                                        <------ xxxxxxsmallRNA(se3)                    --------->YAB1                                        <------ xxxxxxxxxxxxxxsmallRNA(si3)            <---------ICU4                                        <------MYB46(1) xxxxxxxxxsmallRNA(s)                  --------->ICU4                          <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxsmallRNA(si3)                   <---------YAB1                  <-----------HVH21      <------MYB83 xxxxxxxxxxxsmallRNA(si3)         --------->TGA2(1)                 ------->TEIL             -------- xxxxxxxxsmallRNA(l2)             <---------TGA2(1) ----------->HVH21  <-----------TGA1      <------- xxxxxxxxxsmallRNA(se3)           --------->bZIP60(1)               --------->ARR14(2)       -------- xxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------bZIP60(1) <<<<<<<GRF7   <---------ARR14(2)   <---------ZAT6 xxxxxxxxsmallRNA(fl3)       ----------->RAV1(2)<-----------GT1--------->MYB52(1)        <-----------RAV1(1)   accactacaccatagaaccttgttgtactatacctgatgtcatcattacttaacctgacatgaaacaacgaatcgtcagtacaagtgtctagtgttgggt  28952600                                                                                                    -                    ------>MYB83                                                                    -                  ------->GAMYB                                                                     <    <----------DOF2 ------>MYB46(1)                                                                 < ----------DOF2  <---------MYB55(2)                                    <-----------RAV1(1)         <- ---ANAC58       --------->MYB46(3)                                    --------->ALFIN1         ----- ---ANAC58      --------->ANAC58                                    --------->DAG2              <---- ->MYB55(2)     --------->ANAC58                                   ---------->DOF2              <---- --MYB46(3)    --------->WOX13(1)     >>>>>>>>>MYB2            <---------YAB1                   ----- ->MYB59  ---------->ID1      <-------TEIL <---------ICU4     <---------ARR11(3)               ------   cgctttctttttgtcgtcaaccaacttattgatacatgaaaaccaaaattgcagaaaaaaacaagattataaagtgttgcacaaaatttgagtagagaag  28952700    <---------MYB46(3) <------MYB46(1) <------MYB83                                                                                   ----- <---------ANAC46                                                                              ------ -------->MYB46(2)                                                                            ------- -------->MYB52(2)                                                                            <------ ---------DEAR3(1)                                                                          <-------- ---------MYB46(3)                                                                          <-------- ------TEIL                                                                    --------->ARR11(3) ---->HSFC1(2)                                                                 <---------ARR14(2) -----HSFC1(2)                                                                 --------->ARR14(2) -----HSFB2a(1)          --------->ANAC58                                      <---------ARR11(3) ---->HSFB2a(1)          --------->ANAC58 --------->At4g35610           <---------ICU4     <---------ALFIN1 ----->ARR10 <-----------GT1              <---------At4g35610       <<<<<<<<<TBF1     ------>ZmHOX2a(1)   gttcggtgagtgatataacaatttggcaagtaatagtttgcctaagctcaaagttttgaagacagtcttcttcttcatgactatcttcctctcccacgtt  28952800                                                                                  ------>NtERF2                                                                                 --------->RAP2.6(2)                                                                                 --------->ANAC46                                                                     --------->AtMYB61                                                                  --------->AtMYB61                                                                 --------->MYB46(3) <---------ALFIN1                                                               ------>NtERF2     ------->GAMYB   <---------ALFIN1                                           --------->DEAR3(1)--------->DEAR3(2) ---->WRKY12       ------>ZmHOX2a(1)                  --------->AtMYB61         --------->MYB46(3) --->DOF5.7(2)    <---------ALFIN1                    <---------ALFIN1         ------>MYB46(1) >MYC3--------->AtMYB61              <---------At4g35610 <---------ALFIN1      -------->P -MYC3<---------ALFIN1------>ZmHOX2a(1)      <---------ZAT6--------->ANAC46    ------>MYB83 -TOE2(2)       ------>ZmHOX2a(1)--------->AtMYB61    --------->DEAR3(1)       --------->SPL7<------- -TOE1(2) ------>ZmHOX2a(1)   <---------ALFIN1       --------->MYB46(3)       <---------ALFIN1   tacctccacctcctcttcctcctcctctcttaccacctctgctactagtgctagcaccaccacgacgaccaccaaaatccctaccgccacttcttccacc  28952900                                                                               --------->ANAC46                                                                               --------->ANAC58                                                                               --------->ANAC58                                                                             <---------ALFIN1                                                                             --------->AtMYB61                                                                          <---------ALFIN1                                                                          --------->DEAR3(1)                                                                          --------->AtMYB61                                                                         <---------MYB55(2)                                                                         --------->MYB46(3)                                                       --------->ANAC46 ------>NtERF2                                                       --------->ANAC58<---------ALFIN1           <--                                                       --------->ANAC58--------->ANAC46         -----                                                     <---------ALFIN1--------->TCP15(2)        <-----                                             --------->ZAT2         <---------TCP20           <------NtERF2                                             <---------At4g35610    --------->PCF2           --------                                   --------->AtMYB61 --------->AtMYB61--------->MYB46(3)    ---------                                --------->AtMYB61   --------->MYB46(3)<------NtERF2         <--------                                <---------ALFIN1------>NtERF2       <---------TCP16(1)      <--------                               --------->MYB46(3)  ------>NtERF2    --------->PCF5          <--------                             <---------ALFIN1----------->RAV1(2)    <---------TCP15(1)      ---------      <---------At4g35610  ------>ZmHOX2a(1) <---------ZAT2    ----------->RAV1(2)        <---------ATERF1(1) --ALFIN1<---------At4g35610 --------->ANAC46--------->At4g35610  <---------ATERF1(1)  ----------->RAV1(2)   tctatcgctgctactgccaaaatcccttcctccaccaccaaaatccctgctgccaccacggcctcccctggccccaccaccacggcctcccctggcccca  28953000  Previous    Next  AGI:  At1g77030.1    Description:  glycine-rich protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO60923.1); contains InterPro domain DBP10CT; (InterPro:IPR012541) Range:  from: 28952386    to: 28954423    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g77040.1    Description:  pre-tRNA. tRNA-Gln (anticodon: TTG) Range:  from: 28952448    to: 28952519    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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