Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                  --------->SPL7                             <---------ANAC58                             --------->ANAC55(2)                             <---------ANAC58    --------->ANAC58         <---------ANAC55(2)    --------->ANAC58        <---------------AtSPL3 -------->YAB1        <---------At4g35610 --------YAB1    --------->WRKY45 ------>ARR11(3) --------->WRKY38(1)                                                       <---------At4g35610 -------ARR11(3) ----------->HVH21                                             <-----------GT1   ---- ----->YAB1      --------->WRKY12 ----------->HVH21         ------->GAMYB  --------->ATHB12--------->At4g35610 -----YAB1     <----------DOF2--------->ZAT18    <----------DOF2       <-------TEIL        <---------ZAT2   gatcataagcattgtagctttgactgctaatgcgtactgacacagaaaatgcttttattcaacgaaaataacatacatgatttactggtatggagctgat  28954000                                                                                         ---------->DOF2                                                                                       --------->MYB46(3)                                             <---------At4g35610                  ----------->GT1                       <---------ANAC58   <---------At5g28300                    --------->DAG2                       <---------ANAC46  <-----------GT1                         <---------TOE2(3)                       <---------ANAC58<---------ANAC58                          --------->MYB59                 <---------TOE2(3)     <---------ANAC58                     <---------TOE1(3)                 <---------TOE1(3) <----------DOF2               ----------->GT1 <---------TOE1(3) ------>DOF2 ------>ZmHOX2a(1) <----------DOF2         <<<<<<<<<<<<<<<<<LFY <---------TOE2(3)   aaagaattcatcgtccttgaaggtttcttgtgcctttcttttcttaccgcttactgaaaacaatggagagtttatttgaaggtaaggtaaccaaagaagt  28954100             ------->TEIL                                                                     <------             ----------->RAV1(1)                                                      --------->ANAC58          --------->AtLEC2                                                            --------->ANAC58       <---------ATHB12                                                              <---------ZAT18       --------->MYB46(3)                                     --------->AHL20(2)    <---------ALFIN1      ------>MYB46(1)                           <----------DOF2 --------->YAB1     --------->At4g35610      -------->P                      --------->YAB1          <---------AHL20(2)   --------->ZAT2      ------>MYB83               <------ZmHOX2a(2)           --------->AHL20(2)--------->ANAC58    --------->AtMYB61           <---------ARR11(3)  >>>>>>>>>MYB98             --------->ANAC58   <--   --------->MYB46(3)           --------->ARR11(3)  <---------TOE2(3)     --------->ZAT18 <---------CCA1(2)  >>>>>>>>>MYB2             ---------->DOF2 ------->GAMYB    --------->YAB1    --------->ANAC46   <--   ggaaaaccaaccatgcaccacaaactattcaaaagatcaactataacagactttaacatagaattaaaataacaagagcacaagcagcacgcataccttt  28954200                                        --------->At4g35610                                        --------->ZAT2                                        <---------At4g35610                                        <---------ZAT2                                  <------MYB46(1)                                                <---                                  <------MYB83                                                   ----                                 <---------TOE1(2)            <---------AHL20(2)                 ---- ----DOF2                       <--------P    ------>ZmHOX2a(1)                        ---------->DOF2 -------ANAC58                <---------REM1(1)  --------->ARR11(3)          --------->MYB52(1)  <--- -------ANAC58        ---------->DOF2<-------TEIL<---------ARR11(3) ----------->GT1---------->DOF2   gcttccctctactgtgccatcaacaaaagaagttgtaggttcagcttcctagatatcaaaacatttaagtgagtgaaactaatggcaaagaaagaagcat  28954300                                                                                          ------>ZmHOX2a(2)                                                                                         --------->GLK1(1)                                               --------->ATHB12                          <---------GLK1(1)                                               <---------ICU4                       --------->YAB1                                              --------->ICU4                       --------->ICU4                                            -------->HAHB4                  <---------ANAC46                                            <---------ICU4             <---------TGA2(2)<-----------ARR10 ----MYC2                                   --------->YAB1          --------->At4g35610 <---------ARR11(3) --->MYC3                     <-----------GT1 <---------YAB1        <---------At4g35610 --------->ARR11(3) --->MYC2                --------->ANAC58  <---------ATHB12  <---------YAB1 <---------ANAC58     <--- ----MYC3                --------->ANAC58  --------->ICU4 <----------DOF2   <---------ANAC58  ------>ZmHOX2a(1)   gtggcacagtttaatattagaaactgcaagaaataccatctccaaatgattattggaagtcttttgattctgctgatgtcttgtattgatgatctcctca  28954400                                                      --------->ANAC58                                                 --------->ZAT14                                                 <---------ZAT14                                           <---------PCF2                                           <---------PCF5                          --------->AHL20(2)                                           --------->TCP15(1)                      --------->YAB1                                           --------->TCP20                        --------->ICU4                                       <---------At4g35610              <---------ANAC58                                       <------NtERF2  --------->ANAC58  <---------ANAC58                                       --------->At4g35610              <---------ANAC46       <----------DOF2         <------------CBF --------->AtLEC2   <---------MYB52(1) ---------->DOF2 ------YAB1  <<<<<<<<<TBF1 -------->P<-----------RAV1(2)      --------->MYB52(1)  <---------YAB1   tgaatagctcttttcttcttcatcacatcaacccattggccagcgggaccctgcacaagaaccaaaacggtttggcttaggctaattataaagaaatatc  28954500                               --------->ARR11(3)                               <---------ARR11(3)                               <---------GLK1(2)                    ------>MYB83                    ------>MYB46(1)                   --------->ANAC58                       --------->YAB1                   --------->ANAC46             <---------YAB1                           <---------TOE2(3)                   --------->ANAC58           ----------->GT1                    ----------->GT1                  --------->MYB46(3)         <---------YAB1                     ----------->GT1<-----                -------->P <-------TEIL      ----------->GT1              --------->MYB52(1)---------                --------->MYB52(1)      ---------->DOF2  <---------YAB1  ---------->DOF2 <---------YAB1   agaaatacacatataaactaccagccaagtacagatttttgagaaagatgataaatactataatagtcaaacaaacaaagggaaggaaaataagatagga  28954600                                                                                               <-----                                                                                               ------                                                                                              -------                                                             <---------ANAC58              <---------YAB1           <-----------HVH21                  <----------DOF2<---------ANAC58           <---------YAB1 <---------ANAC58       --------->ARR14(2)  --------->At4g35610                       <---------ICU4 <---------ANAC58       <---------ARR14(2)  <---------At4g35610                      --------->ICU4 -ZmHOX2a(1)      --------->ATHB12     <---------DAG2        <---------ANAC46        <---------YAB1 < >CCA1(2) --------->TOE1(3)         <-----------GT1      <---------MYB52(1)     --------->ANAC46-----   atagcgagggtaccttcacatgtttggatttggcaacttcaccttctgcttcaagtatcgtttgcttgggtctagcacatatcagccattattctaatta  28954700                         --------->YAB1     <------MYB46(1)    <---------YAB1     <------MYB83      --------->ARR11(3)                                                          -- ----AHL20(2)          <---------ARR11(3)                                      <-----------GT1     <- --->AHL20(2)         --------->YAB1                                        <---------YAB1     ------ -->AHL20(2)    <-------TEIL                                              --------->YAB1----------->RAV1(2) ---------TOE2(3)    <---------YAB1                                      <---------YAB1 --------->At4g35610 ---->YAB1 ---------->DOF2                             <------ZmHOX2a(1) --------->ICU4 <---------At4g35610   ataacgttggtattaaagtgcatatgatcataccatcttgaagtctggtcgtatcaaggacataaatagaacacgatgattatactactcacctgaaatt  28954800               --------->ANAC58               --------->ANAC46        --------->LBD16       --------->HSFC1(1)       --------->HSFB2a(2)       <---------HSFC1(1)                    --------->YAB1       <---------HSFB2a(2)                   <---------ICU4      <---------LBD16                        <--------ATHB1                     --------->At5g28300 ------->AHL20(2)                           <---------ATHB12                   ----------->GT1     -- --------AHL20(2)                           <---------ATHB51        --------->ANAC58              --- --->ICU4      --------->ANAC58   --------->LBD16                   --------->ANAC58    ------>ZmHOX2a(1)   tttaattttctggaaaaacgacattgcctctaattccccagtttcaataatgcttctgaagatgggatgcaagccttctcgtggtaaatcctttgctctc  28954900  Previous    Next  AGI:  At1g77030.1    Description:  glycine-rich protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO60923.1); contains InterPro domain DBP10CT; (InterPro:IPR012541) Range:  from: 28952386    to: 28954423    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g77050.1    Description:  DEAD/DEAH box helicase, putative. Identical to Putative DEAD-box ATP-dependent RNA helicase 29 (RH29) [Arabidopsis Thaliana] (GB:O49289); similar to DEAD/DEAH box helicase, putative (RH10) [Arabidopsis thaliana] (TAIR:AT5G60990.1); similar to hypothetical protein OsI_028228 [Oryza sativa (indica cultivar-group)] (GB:EAZ06996.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO60922.1); similar to DEAD-box ATP-dependent RNA helicase 29 (RNAH) (GB:A2YV85); contains InterPro domain RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); conta Range:  from: 28954789    to: 28956420    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version