Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                           <---------ALFIN1                       ------>MYB46(1)                       ------>MYB83                      --------->MYB55(1)                     <---------MYB111(1)                     <---------MYB46(2)                     <---------MYB59             --------->ZAT14                                           <---------ALFIN1             <---------ZAT14       <---------MYB46(3)                <---------ALFIN1             <---------ZAT18     --------->At4g35610           <---------ZAT2         <---------WRKY38(1)     <---------At4g35610           --------->ZAT2   --------->TOE2(3)--------->ANAC55(2)   <---------At4g35610  --------->ZAT14  --------->ZAT6    <---------ANAC55(2)   --------->ZAT2    <---------ANAC58 ----->TOE2(3)     -------->P    <---------ZAT2             <---------ANAC58 ----->TOE1(3) ------->TEIL  <-----------HVH21        <-------TEIL  <---------REM1(2)           <----   cttaacattagtcaatgcacttacctaacaccttcagctgttcaagctgtctgtgatacattccctgctctccacacttgttcaggcagacattcacttg  28947200                                                                                     ------>NtERF2                                                                                   <------NtERF2                                                                                   --------->RAP2.3(1)                                                            --------->ANAC58      --------->LBD16                                                            --------->ANAC58      <---------ATERF1(1)                                                          <---------ALFIN1       <---------DEAR3(1)                                                         <---------ZAT18         --------->ANAC46                                                         --------->ZAT14        --------->MYB46(3)          <---------ANAC46                     ---------->DOF2        --------->WRKY12        <---------MYB46(3)                   ------>ZmHOX2a(1)        --------->WRKY38(1)        --------->MYB55(2)                  --------->TOE1(3)        --------->DOF5.7(2)       <---------MYB52(1)                   --------->TOE2(3)   <---------ALFIN1<---------LBD16       <--------P                   <---------ANAC58    --------->DEAR3(1)     ----------->RAV1(2)      <-------GAMYB   --------->GLK1(2) <---------CCA1(2)<---------ZAT14     <---------ALFIN1      --     <---------MYB46(3)             <---------ANAC58   --------->ANAC46     ----------->HVH21    ---- -------HVH21  ------->TEIL       <---------YAB1  <---------At4g35610<---------MYB52(1)          <---   tcatgagcggttgtttgaatctacaatctgttcattgtgcttgtatccttcaagctcaccgcactcacaccgtttaccctcacccggcgcattgaaacgg  28947300                                               <-----------GT1      <-----------RAV1(2)                <-------TEIL           ---------->DOF2 ------->ALFIN1                  --------------->AtSPL8  <---------ZAT6              <----------DOF2 ----->ALFIN1                    <---------------AtSPL8  ----------->GT1     <---------GLK1(1)   ---- ------ANAC46      --------->ZAT14 <---------ZAT14     ----------->GT1  <----------DOF2    <---------   tgtgtgagccagagggtctactactctctagtatgtgtgtacatacatataaccatatggtgttaataaagcttctttgagttccttctttgtctttgat  28947400               --------->ZAT6                ------->TEIL                                           <              <---------TOE2(3)           --------->ICU4                                        <----        --------->ARR11(3)       <---------ARR11(3)                                             -----        <---------ARR11(3)       --------->ARR14(3)                                           -------  --------->YAB1                 <---------ARR14(3)                  ------------>CBF       <--------  --------->TOE2(3)              --------->GLK1(2)        <---------ICU4                    --------- -------->CBF<-----------GT1     <---------ARR14(2)     <---------ANAC55(2)               --------->WOX13(1) -DOF2<---------TOE2(3)          --------->ARR11(3)     --------->ANAC55(2)              --------->MYB46(3)   gcaatcttaagattttaacattacctagtcttgaaaatcttgtaatgaatcgcgaaatacttatttcttctaacaatttgtttaagttgcatccatcaat  28947500           <---------YAB1      <---------CCA1(2)    --------->YAB1    <---------ICU4                                                              ----------->GT1 --------->YAB1                                                             --------->ARR14(2) <---------ICU4                                        <-------MYC3         <---------ARR14(2) ---------ATHB12                                       ------->MYC3       --------->LBD16     ------- -----ATHB12                                        <---------AtLEC2    <---------LBD16     --------- ------->CBF                                        <---------ANAC58  --------->ARR14(2)    <-------- -->WOX13(1) ---------->DOF2                        <---------ANAC58  <---------ARR14(2)   ------>MYB46(1) -ATHB12  --------->TOE2(3)                     <----------DOF2     --------->LBD16        ------>MYB83 --->CBF<---------YAB1                     <---------At4g35610    <---------LBD16       -------------   caataatcatatcattaaagaatgaataacacagaaataagatgatgctgctttgcatgtgagactaaaccggaaccggaaatggttaaaaccaaatcgg  28947600                                                                                         ------->TEIL                                                                                         <-------TEIL                                                                                         --------->SPL7                                                                                       --------->TOE2(2)                                                                                      <---------ANAC55(1)                                                                                      <---------ANAC58                                                                                      --------->ANAC55(2)                                                                                      <---------ANAC55(2)                                                                                      <---------ANAC46                                                                                      <---------ANAC58                                                                                     <---------------AtSPL3                                                                                     --------------->AtSPL3                                                                                     <---------------AtSPL8                                                                                     --------------->AtSPL8                                                                             <------NtERF2                                                                            <---------RAP2.3(1)                                                                           <---------DEAR4(1)   --------->ARR11(3)                                                      <---------DREB2C(2) --------->ICU4                                                            --------->ETT(1) ---->GT1                            <----------DOF2                  <---------GLK1(2)<---------SPL7 >ARR14(2)              <-----------GT1                 --------->ANAC58   <---------DEAR3(1) -ARR14(2)           --------->MYB111(1)                --------->ANAC58   <---------RAP2.3(3) ---->AG          --------->YAB1 <-----------GT1        --------->ANAC46   <---------At1g77200      -   aaaatgattttgaagtacaatagtagttacaggttttatctttcaagtagttttctccaagctatggaagtagattgtcggcgttattacgtacgtcttc  28947700            <---------At4g35610            --------->At4g35610           ----------->RAV1(1)         --------->At4g35610         <---------ZAT2         --------->ZAT2         <---------At4g35610        ----------->RAV1(1)     --------->AtLEC2       <---------DAG2    <---------ATHB12                          <-----------RAV1(1)   --------->YAB1--------->GLK1(1) <----------ID1 <---------WOX13(1)                   <---------YAB1  <---------ATHB12          <----------DOF2 --------->MYB52(1)                      <---------YAB1--- -------->WOX13(1)    --------->ANAC46    --------->MYB46(3)                      --------->YAB1 ----   ttcaatcatgcagcagcagaaatcgcgaaactttatggagacaaaccaatggattgctcttgaagaagggttttcttagttcaattgtcattgttgctaa  28947800                                              <---------ARR14(2)                                              --------->ARR14(2)                                            --------->LBD16                                           --------->ANAC46                                           --------->ANAC58                                           --------->ANAC58                                          --------->LBD16                                          <---------LBD16                     <-----------HVH21   <---------ANAC58                   --------->LBD16       <---------ANAC58                                         <--                  <---------LBD16    --------->GLK1(1)                                          -----     ------>ZmHOX2a(1)   ----------->GT1 <---------ANAC46                                      <----- ---->GAMYB   ------->TEIL           <---------GLK1(1)                                    --------->ZAT6 ----->MYB46(3)  <-----------------AGL1 <---------LBD16  --------->ANAC46          <---------ANAC46   ccatctcctccaaatgtactcccggtctggtaaaatgggaattgcgcggaacttgttcgacgaaatgcctgatagaaactatttctcgtggaacactatg  28947900                                                                                               <-----                                                                                               <-----                                                                                              <------                                                                                         <---------MYB46(3)                                                                                        <--------P                        --------->DAG2                                                 <-------GAMYB                  <---------LBD16                                                     <---------MYB46(3)       <-------TEIL    ---------->DOF2                                               --------->ALFIN1   <---------------AtSPL8--------->DAG2                                             ------->MYC2 -------WOX13(1)  --------->LBD16      <---------TOE2(3)          --------->CCA1(2) <-------MYC3 ---->ATHB12    <---------LBD16        <---------TOE1(3)     ---------->DOF2        ------->MYC3  --- ----YAB1    <---------GLK1(1)     <----------DOF2     <---------bZIP60(1)          <-------MYC2-----   attgaagggtacatgaattctggggaaaagggaacgtctttgaggttttttgatatgatgccagaaagagatgggtactcttggaacgtggttgtttccg  28948000                                                            --------->ARR11(3)                                                            <---------ARR11(3)                                                        ---------->DOF2                                                     <------NtERF2     ---------->DOF2                                --------->LBD16 ----ANAC46                      ----------->GT1   --------->LBD16   <---------bZIP60(2)     -------- ----LBD16                     <------ZmHOX2a(1)   <---------ANAC46  <---------ANAC46        <------- ---LBD16             --------->ALFIN1             --------->RAP2.6(2)  --------->WRKY12     <------- ------>ARR14(2)--------->At4g35610               <---------LBD16 ----------->HVH21 <----------DOF2 ---->LBD16     <---------At4g35610             --------->AtLEC2  ----------->TGA1--------->At4g35610   ggtttgctaaagctggtgagctaagtgtcgctaggaggttattcaatgccatgccggaaaaagatgttgtgacgttgaactctctgcttcatggatatat  28948100  Previous    Next  AGI:  At1g77000.1    Description:  ATSKP2;2/SKP2B (ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2); ubiquitin-protein ligase. Identical to F-box/LRR-repeat protein 5 (FBL5) [Arabidopsis Thaliana] (GB:O49286;GB:Q680E2;GB:Q8GY48); similar to SKP2A, protein binding [Arabidopsis thaliana] (TAIR:AT1G21410.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO60926.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) Range:  from: 28945644    to: 28947490    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g77010.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G13600.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN68525.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO60932.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 28947604    to: 28949691    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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