Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          --------->ATHB12                                 --------->ANAC46                               --------->TOE2(3)                                 --------->ANAC58                              --------->ATHB12                          <---------------AGL15                                <---------ICU4             --------->TOE2(3)   --------->ANAC58          --------->TOE1(3)--------->ANAC46             <----------DOF2 --------->YAB1            ---------->DOF2    --------->ANAC58       ----    --------->ZAT14  ---------->DOF2              <----------DOF2         --------->ANAC58    -------   agacaccatactctactttagtccaaagctataacaagcaaaaattcaaagacttttcaaagcttaaatactaagcacacatcattagaaagattgcaac  28929900                            <-----------GT1                     --------->ANAC58                                    <---------YAB1                     --------->ANAC58             --------->ANAC58     ------>ZmHOX2a(2)                 --------->ANAC58                 --------->ANAC58 ----------->HVH21          <------                 --------->ANAC58            --------->ZAT18      <---------MYB52(1)          -------               ---------->DOF2             --------->At4g35610   --------->LBD16             -------- --->GAMYB    <---------AHL20(2)           <---------At4g35610 <---------LBD16             ---------- ---->RAV1(1)--------->AHL20(2)     --------->AHL20(2)      <----------DOF2    <---------ANAC46   agaacccatgaacaatttaaagcaaggaattaacaaaattcaataagctcacaaggattagtctttccggtgatcgtgattacgcagaaactaaaaagga  28930000                                                                                               ------                                                                                             <-------                                                                                           <---------                                                                                          ------>ZmHOX2a(2)                                                                                          ===========                                                                                         ============                                                                                         <------ZmHOX2a(2)                                                                                        <-----------ARR10                                                                                        --------->ARR14(2)                   ---------->DOF2                                                      <---------ARR11(3)                --------->ANAC58                                                        --------->ARR11(3)                --------->ANAC58                                                        <---------ARR14(2)             --------->STY1(2)                                                       --------->ANAC58      --------->At4g35610                                                 <----------ID1--------->GLK1(2) ----ID1     <---------STY1(2)                                        ---------->DOF2--------->ANAC58 ---->GT1   --------->ANAC58                                   <-------TEIL      --------->ANAC58 --->GT1    --------->ANAC58                                  --------->GLK1(2)  --------->ANAC58  <- >DOF2<---------At4g35610       ----------->GT1               --------->CCA1(2)---------->DOF2 ------   aaaaaaacagctactagcaaggaaagaattcgaagagtaagaaaactttggaacaagacttgagattcgaacaaaagagacaaaagcaaggatctttacc  28930100    <------ZmHOX2a(1)   <---------At4g35610   --------->At4g35610  >>>>>>>GRF7                        ---------->DOF2 <-----------RAV1(2)           <---------RVE1(1) ----------->AG               --------->ARR11(3) ----GT1                      <---------ARR14(2) -DOF2   <---------MYB59      --------->ARR14(2) ==========HOX2a_HOX2a        <---------ARR11(3)                                                    - ==========HOX2a_HOX2a       <------ZmHOX2a(1)                                                    --- ----------HVH21       --------->ANAC58                                                           --- ----------->AGL1      --------->ANAC58                 --------->AHL20(2)                        ---   ttgtcaggagacctaaaacaagagcaagcgaggattttttaaagtctcaagacttaaaaaaaatgaaacaatttgaagggttttcgaaaaactatcaaac  28930200                                 <---------SPL7                                 <---------RAP2.6(3)                                 --------->ORA47(1)                                --------->DEAR3(1)                               --------->ATERF1(1)                               <------NtERF2                              <---------ATERF1(1)                              <---------RAP2.3(1)                     --------->ANAC58            <-----------RAV1(2)--------->RAP2.3(1)      <---------ARR11(3)     <---------DEAR3(1) <---------At4g35610      --------->ARR11(3)  --------->O2       --------->At4g35610     <------ZmHOX2a(1)    <---------O2       <---------At4g35610 <---------HSFB2a(2)    --------->ICU4   <<<<<<<<<<WRKY18--------->HSFB2a(2)         --------->HSFB2a(2)  ---------->DOF2 -------->At5g28300  --------->ANAC58<---------HSFB2a(2)         --------->HSFC1(1) <---------YAB1 ------>ANAC46   <-----------HVH21   ------>ZmHOX2a(1)      <---------At4g35610----------->GT1 ------>ANAC58--------->At4g35610------>NtERF2  --------->At4g35610           <---------ARR11(3) ------>ANAC58<---------At4g35610<-----------HVH21    <----------DOF2         --------->ARR11(3)  *TSS   acggtaaggatttttcaggtgtcaagtcaagtcgccgtcctagaatcaactgctgacttttctgcttctagagagagagagatgttataaaagttgcaaa  28930300                                         <---------DEAR3(2)                                       ---                                        <---------At1g77200                                       <--                                        <---------DEAR3(1)                                       ----                                       <---------MYB52(1)                                        <---                                      <-----------HVH21         <-----------HVH21  <---------AHL20(2)                                <-----------HVH21              --------->DEAR3(1) --------->AHL20(2)                     <---------DAG2<---------At5g28300       <---------At5g28300--------->YAB1  <----                     <----------DOF2 --------->DEAR3(1)---------->DOF2        --------->AHL20(2)-----                  <-----------GT1 <-----------GT1  <----------ID1            --------->YAB1--------->MYB52(1)   cttgtgttttgggttttgtttcacttttggctaatgtcaccgtcggtgatattaagacaaagtcaccgtcgcactactaaaataataaatagaaaacggc  28930400                                   --------->At4g35610                                 --------->ZAT18                            <---------ANAC58                            <---------ANAC58                            <---------ANAC46<---------AHL20(2)                         --------->WRKY12  --------->AHL20(1)  <----------DOF2        --------->WRKY38(1)--------->AHL20(2) ------>ATERF1(1)        --------->WRKY45  --------->AHL20(2) ----NtERF2             --------->DOF5.7(2)<---------AHL20(1)                  ----------->GT1 -->NtERF2             <-------GAMYB       <---------AHL20(2)        ---------->DOF2 ------ATERF1(1)      <---------MYB46(3)--------->YAB1           --------->ANAC46 -----DEAR3(1)       <------NtERF2 ----------->GT1               --------->ANAC58 ---->DEAR3(1)    ---------->ID1 <---------ZAT18                 --------->ANAC58            --------   gtcgctttccctataggtttgtcgtcgttgacttgtgcgctaaaataaaattaagagcgttttctaaacgcaaaagaaaacgcgtttaaacgagaagatg  28930500                                                           <---------------AGL15                        --------->ZAT18                    --------------->AGL15                        <---------ZAT18------>MYB46(1)    <-----------------AGL1                 --------->ANAC46      ------>MYB83       ----------------->AGL1           --------->GLK1(2)   --------->YAB1             <-----------------AG        --------->ARR11(3)    <---------ATHB12 --------->YAB1  ---------->DOF2  ---------->DOF2--------->ANAC58    <---------MYB59      ----------------->AGL3          <-------TEIL ->At4g35610     --------->ANAC58    --------->AtMYB61    ----------------->AGL2  ---------->DOF2   acttcaaagagataatctcacacaagtccacaatgaagaccaaactctatcatcaaactcaccagaaaaggaacagagacacataaaagagattcactct  28930600                                         <---------MYB52(1)                           --------->ICU4<-------GAMYB                                    <---------AHL20(2)                          --------->ANAC55(2)                                             --------->ATHB12                          <---------ANAC55(2)                                <---------AHL20(2)                    --------->ICU4      <------MYB46(1)       --------->ARR11(3)         <---------YAB1               --------->ANAC58         <------MYB83   <-------TEIL         --------->AHL20(2)     --               --------->ANAC58         <---------DEAR3(2)    <---------ARR11(3)   <---------YAB1  <-   tgttgaagttgaagtgaaggcaacgattacttattaagtagtcggtagtgaatcaagtacataagatttcaaaaaacataaaattttgatatttattgat  28930700                   <---------TOE2(3)                <---------YAB1              --------->YAB1                                  --------->ICU4       <---------ZAT18                                        <---------YAB1       --------->ZAT14                                      --------->YAB1              <---------ANAC46       <---------ZAT14          <---------At4g35610         <---------ICU4              <---------ANAC58       --------->ZAT18    <---------TOE2(3)                <---------ATHB12       <-------TEIL ----->TEIL   <--------HAHB4    --------->At4g35610        --------->ICU4        --------->CCA1(2) --------YAB1<---------YAB1<---------YAB1     --------->GLK1(2)       <---------ARR11(3)<---------ANAC58   gaacattggtacactattattaatgttttatgttagcaaacgctgaagtatctatctacaaatcattatcaagaactctatagatacattgcgtagactt  28930800  Previous    Next  AGI:  At1g76970.1    Description:  VHS domain-containing protein / GAT domain-containing protein. similar to VHS domain-containing protein / GAT domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G21380.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61950.1); contains InterPro domain GAT; (InterPro:IPR004152); contains InterPro domain ENTH/VHS (InterPro:IPR008942); contains InterPro domain VHS; (InterPro:IPR002014); contains InterPro domain Target of Myb protein 1 (InterPro:IPR014645) Range:  from: 28927560    to: 28930298    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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