Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   <---------ATERF1(1)                                                                                 --------->ABI4(2)                                                                                 ------>NtERF2                                                                               <------NtERF2                                                                              --------->LBD16       --------->ANAC58                                                       <---------ATERF1(1)       --------->ANAC46                     ----------->GT1             <--------P<------NtERF2       --------->ANAC58              --------->TOE2(3)                <---------bZIP60(2)<---------ARR14(2)   --------->ANAC46                  <---------MYB59                 <---------AtMYB61   --------->ARR14(2) ----->TOE2(3)                     ------->TEIL<-----------GT1  <---------DEAR3(1)--------->ATERF1(1) ---->YAB1                         --------->SPL7           ------>NtERF2    --------->ANAC46    ---- ----HAHB4                        <---------CCA1(2)        --------->DEAR3(1)<---------DEAR3(1)  <--- ---->ATHB12                    <---------ANAC58           <---------ALFIN1 <---------LBD16  <------- ----YAB1                       <---------ANAC58 --------->REM1(1) <---------MYB52(1) <---------ANAC46   attagacacaaggaatttacagacacatcttctcgcgtacctaaatttgttacaacatgctccgcctcggtgaggttgcccggcgcgtccgtatacatgt  28926800                                                         <-----------HVH21                                                        --------->AtMYB61                                                     --------->DEAR3(1)                                                     <---------ALFIN1                                                    --------->MYB46(3)                                                    <------NtERF2             --------------------->WRI1                                                   ------>NtERF2     ------>ZmHOX2a(1)                                                  --------->PCF2     <---------LBD16                                             <-------GAMYB       --------->ARR14(2)                 < --->TEIL                --------->ANAC58   <---------ANAC58     <---------ARR14(2)                <- ----TEIL                --------->ANAC58   <---------ANAC58  <---------TOE1(2)                   --- --------AtSPL8  <----------DOF2            <---------ANAC46  <---------TOE2(2)   <------ZmHOX2a(1)--   acattgatgcaatgtctaactttcggttcgcaaacttgtggcattggcgttggcaccaccttcacaggttcctcgggcttcttaggaaacaccacaattg  28926900                                                                                                   <-                                                                                                   --                                                                                            <--------                                                                                           ------>NtERF2                                                                                          --------->DEAR3(1)                                                                                          --------->RAP2.3(2)                                                                                         --------->RAP2.3(1)                                                                                         --------->ATERF1(1)                                                                                         <------NtERF2                                                                                         --------->RRTF1(1)                                                                                        <---------At4g35610                                                                                        <---------ATERF1(1)                                                                                        <---------RAP2.3(1)                                                                                        ------>NtERF2               --------->DEAR3(1)                                                      --------->DEAR3(1)               <---------ALFIN1                                                        --------->ATERF1(2)               --------->AtMYB61                                                       <---------ATERF1(2)            <---------ALFIN1                                                           --------->RAP2.6(2)            --------->ANAC46                                                           --------->RAP2.3(2)           --------->MYB46(3)                                                         --------->RAP2.3(1)       <-----------HVH21                                                              --------->ATERF1(1)    --------->LBD16                                                                   --------->ERF1   <---------LBD16       <---------ANAC58                                            <---------At4g35610   --------->DEAR3(1)    <---------ANAC58  ------>MYB46(1)                           --------->At4g35610  <---------LBD16  ----------->HVH21       -------->P                                <---------ATERF1(1) ---------ALFIN1 ----------->RAV1(2)       ------>MYB83        <---------ICU4        ------>NtERF2 <- --------SPL7 --------->MYB46(3)          <---------ALFIN1   ----------->RAV1(1) <-----------RAV1(1) ------>RAP2.6(2)--------->At4g35610     --------->MYB46(3)<------NtERF2       ---------->DOF2    --- ---->NtERF2--------->AtMYB61  ------>NtERF2              ------>NtERF2     --------->TOE2(3)     <--   ccgcaccggggtcaccaccacctgaaggcttgcctccttgaaacccacccctataaccggtgccaacattactcccatccctaatgctgccgccgctagg  28927000                            --------->GLK1(1)                                                ------>NtERF2                            <---------GLK1(1)                                                <-------                           <---------GLK1(2)                                                <--------                           <---------ARR14(2)                                               ---------                          <------ZmHOX2a(1)                                                --------->ATERF1(1)                       <-----------RAV1(2)                                                 <------NtERF2                    ----------->HVH21                                                      --------->RAP2.3(1)                   --------->ATERF1(1)                                                     --------->DEAR4(2)                  <---------DEAR4(2)     --------->AtMYB61                                <---------ATERF1(1)      ------>NtERF2<-------PIF5    <---------ALFIN1<---------ATERF1(1)                    ------>NtERF2     <---------ALFIN1------>NtERF2<---------MYB55(2)                                     --------->DEAR3(1)    --------->MYB46(3)<------NtERF2--------->AtMYB61                                     --------->RAP2.3(2)   --------->ANAC46------->PIF5   --------->MYB46(3)                                     --------->RAP2.3(3) --------GLK1(1)  <---------ATERF1(1) --------->AtMYB61                     <---------MYB52(2)    <-- ------->GLK1(1)  --------->At4g35610 <---------ALFIN1  <---------------AGL15            --------->RAP2.6(2) -MYB52(1)  ---------->DOF2--------->ARR14(2)---------->DOF2     <------ZmHOX2a(1)  ---------->DOF2 - ---------TaMYB80 <---------DEAR3(2) --------->MYB46(3) --------------->AGL15     ------>MYB83  ----- ------>ARR14(2) <---------DEAR3(1)--------->DEAR3(1)  ----------------->AGL3     ------>MYB46(1) --- -------ARR14(2)<---------LBD16 --------->ANAC46   --------->At4g35610    --------->ZAT6--------->RAP2.3(1)   gatacccccacccatatagccggtgccaggattcccaccaccaccaaaatagccgcttccaatactaggagagttgccactaccaacaaagccgcctcct  28927100                                   <---------bZIP60(1)        <---------SPL7             --------->bZIP60(1)        ----------->HVH21       --------->ICU4       <---------ANAC46      <---------ARR14(2)     ------>NtERF2          <------NtERF2     --------->MYB52(1)    --------->LBD16    ----------->HVH21     --------->RAP2.6(2)  ----------->RAV1(2)    --------->ATERF1(1) --ATERF1(1)             <---------LBD16                                     ------>ZmHOX2a(2) -ALFIN1--------->LBD16  <------NtERF2                                      --------->GLK1(1) >DEAR3(1)              ------>NtERF2                                      <---------ARR11(3) -------ALFIN1          <---------ATERF1(1)          ------->GAMYB         --------->ARR11(3) -------->ANAC46       --------->ARR14(2)         --------->MYB52(1)     --------->KAN4(1) ->ZmHOX2a(1) <----------DOF2--------->ARR14(2)--------->YAB1            <---------KAN4(1)--------->AHL20(2) ------>AtMYB61        <---------ARR14(2)     <---------YAB1            <---------KAN4(2)<---------ATHB12   ccacccctgccggacactttaatcggagccggaaatgatgtcaagagtatgataacggaaatgagcatcaatggaatgatctccatgtctaatgaattag  28927200                                                                                          <---------MYB46(3)                                                                                       <------------CBF                                           <---------YAB1                             --------->ATHB12                       <----------DOF2  <---------ATHB12                             <---------YAB1                       <---------------AGL15                                         --------->ICU4                       ==============================================================================                 ------->TEIL    --------->ETT(2)                             <------------CBF     <-           --------->ICU4<---------AHL20(2)------------>CBF         --------->AHL20(2)<---------ICU4        --------->WRKY18(1)      <---------ETT(2)     <-----------TBP      <------ZmHOX2a(1)       == <---------GLK1(1)     --------------->AGL15      <----------DOF2<----------DOF2  <---------YAB1-----   tagagctctggtcaagatgaatttgctttaatttgtagacaaatgatcaatgctttatttgtagggtctttaaaataggaaattgtgatcattggttcct  28927300                                                                             --------->At5g28300                                                                            ----------->GT1                                                                         <---------PCF2           <--                                                   <------MYB83       --------->ALFIN1           <---         <---------GLK1(1)                         <------MYB46(1)    <-----------RAV1(1)    <------- ==============MADS_MADS       <-------TEIL        ----------->GT1  <-----------RAV1(1) <-----------RAV1(1) --------------AGL15--------->ALFIN1            <------ZmHOX2a(1)<---------AHL20(2) --------->AHL20(2) ==================================================================================================== ->ZmHOX2a(1)     --------->ALFIN1       --------->MYB52(1)  ------>ZmHOX2a(1)    --------->AHL20(2)   acaaaacatggaaatgtggaatgtgggaatcgattcatataaacaagggaggatggtaatttcctattttatgtggggcagtaaaaatatatgttgttag  28927400                                                                                    --------->REM1(2)                                                                                   --------->ALFIN1                                                                                 <---------ANAC58                                                                                 <---------ANAC55(2)                                                                                 <---------ANAC46                                                                                 <---------ANAC58                                                                                 <---------ANAC55(1)                                                                                ------>ZmHOX2a(2)                                                                            --------->ICU4                                           <---------AHL20(2)             --------->YAB1                                           --------->AHL20(2)             <---------ICU4                                          --------->AHL20(2)             --------->ICU4                                          <---------AHL20(2)            --------->AHL20(1) -------------AGL15                 ----------->GT1        <-----------ARR10<---------YAB1 --------------AGL2                --------->DAG2      --------->LBD16 --------->YAB1--------->ALFIN1 --MYB52(1) ---------->DOF2      ---------->DOF2      --------->LBD16--------->AHL20(2) =============MADS_MADS     ------>ZmHOX2a(1)  ---------->DOF2<-----------GT1-------->HAHB4      ----   ctattttgggttttaaaagctctgtttctcctagcaaaaggtaaattaataaagtcccgagaatttacccaaaaaataatgatccgtgtggaacttaact  28927500                                           <---------YAB1                                --------->ARR11(3)                               --------->CCA1(1)                               --------->GLK1(1)                               <---------GLK1(1)                               <---------RVE1(1)     ----------->GT1     <-------GAMYB            --------->ARR11(3)   <---------ANAC46    ----------->GT1           <---------ARR11(3)   <---------ANAC58                           <------  <---------ANAC58        ---------->DOF2<-----------GT1  ---------->DOF2       ------>ZmHOX2a(1) ---  <---------ANAC58--------->YAB1<---------ARR11(3) <---------ANAC58 ---------->DOF2    <---------ZAT14 ----->MYB52(1)  <---------YAB1--------->RVE1(1) <---------ANAC46 <---------AHL20(2)<---------ANAC46   aagggggtgttattagtttataatatgcaaaagatatctgatattacgattttgtgtgttaaaagtattttaaagctgtgtccttggagtgaagttagag  28927600                            --------->ARR14(2)                 <------MYB46(1)                                  <---------ICU4                 <------MYB83                                    <---------YAB1               <---------ANAC46                               <---------YAB1              <-------GAMYB <---------ARR14(2)      <---------ALFIN1             --------->MYB111(1)               <---------------AtSPL8             --------->MYB55(2)            --------->YAB1    --------->ARR11(3)            <--------P      <---------GLK1(2)  --------->ANAC46--------->YAB1 ---HSFB2a(2)<---------MYB46(3)           <---------AHL20(2) <---------ARR11(3)         ----------->GT1 -------->GT1--------->MYB111(2)   --------->ZAT6  <---------ZAT18--------->YAB1      ---------->DOF2   aagtaaaacatatggttgttggtattatcagatactatctctaaataataaggcacactctaatatcatcatcactctctgaaaacccaaaagaaaaaaa  28927700  Previous    Next  AGI:  At1g76965.1    Description:  Encodes a Protease inhibitor/seed storage/LTP family protein Range:  from: 28926623    to: 28927186    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g76970.1    Description:  VHS domain-containing protein / GAT domain-containing protein. similar to VHS domain-containing protein / GAT domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G21380.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61950.1); contains InterPro domain GAT; (InterPro:IPR004152); contains InterPro domain ENTH/VHS (InterPro:IPR008942); contains InterPro domain VHS; (InterPro:IPR002014); contains InterPro domain Target of Myb protein 1 (InterPro:IPR014645) Range:  from: 28927560    to: 28930298    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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