Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                      <---------ARR11(3)                                    --------->ARR11(3)       <---------ICU4                                    <-----------ARR10        --------->YAB1                                   --------->RVE1(1)   --------->YAB1                                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                   --------->CCA1(1)  <---------YAB1                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)               ----------->GT1xxxxxxxxxxxxxxxx>smallRNA(i)  <---------ATHB12           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <---------ICU4         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <---------YAB1      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        --------->ICU4     --------->DAG2    ----------->GT1   <---------AHL20(2)       <----------DOF2       ---------->DOF2    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <---------RAP2.6(2)     <---------RAP2.6(3)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ---------AHL20(1)   <---------AHL20(2)   <---------LBD16 --------->YAB1              --------->TOE2(3) -------->ARR11(3)   --------->AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         ----------->GT1 -------->AHL20(1)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------YAB1--------->ANAC58            -- --------AHL20(2)--------->ICU4   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)--------->ANAC58          ----   aatattttgtaattttgtagtaattaaatgctatcaaatatctatgcggcttcatgattataatcatgccgaaaagcaatatcaaaaacgataattttgt  28896600                  --------->ARR11(3)                  <---------AHL20(1)                  --------->AHL20(1)                 <---------AHL20(2)         <---------ARR11(3)                              <---------TOE2(3)         --------->ARR11(3)                             ---------->DOF2        --------->YAB1                              ----------->GT1    <---------AHL20(2)                     <---------AHL20(2)   --------->AHL20(2)                      --------->AHL20(1)                   ----------->GT1   ---   <---------AHL20(2) <---------HSFB2a(2)  --------->AHL20(2)      <---------GLK1(2)              <-- ------->ICU4 <---------AHL20(2)           <---------AHL20(1)      --------->ARR11(3)            ---- ------->GT1 --------->AHL20(2)  <---------YAB1  <---------ANAC46  <---------ARR11(3)         -------   agtaattaaatgatattaaatattttggaagttttattttagtaattaattgtgtagttaaagtagaaagattttgagaagattgttaaatatcaaatat  28896700                                                                     --------->TOE1(3)                                                                     --------->TOE2(3)                                                                     --------->YAB1                                                                   --------->ARR11(3)                                                                   <---------ARR11(3)                                                                <---------AHL20(2)                                                          ----------->GT1                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                      xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                           <-----------HVH21    --------->AHL20(2)                                      --------->AHL20(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                   <--------HAHB4    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                   -------->HAHB4   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                   <---------AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                   --------->ATHB51 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                   -------->ATHB1   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                        <---------YAB1<---------AHL20(2)<xxxxxxxxxxxxxxxxsmallRNA(s)                      --------->AHL20(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                      --------->YAB1 <---------YAB1 <xxxxxxxxxxxxxxxxsmallRNA(i)           <-----------GT1        <---------ATHB51  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        --------->ARR14(2)        --------->ICU4   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <---------ARR14(2)        <---------YAB1   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <---------ARR11(3)      --------->YAB1    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <---------GLK1(2)      <---------ATHB51 <xxxxxxxxxxxxxxxxsmallRNA(i)        --------->ARR11(3)     <---------AHL20(2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        --------->ARR14(3)     --------->AHL20(2) <xxxxxxxxxxxxxxxxsmallRNA(s)        <---------ARR14(3)     --------->ICU4   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  --------->YAB1     <---------YAB1<---------ICU4 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ------>AHL20(2)     --------->ICU4--------->YAB1xxxxxxxxxxxxxxxx>smallRNA(s) -------AHL20(2)  --------------->AGL15<---------AHL20(2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ----->AHL20(2)   <---------YAB1<---------ICU4  ----------->HVH21<---------AHL20(2)                 - -->AHL20(2)  <----------DOF2--------->YAB1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         <-----------GT1   ttaattagaagattttctttctaattataaaaaataattattaaatgtcagtgacagccattgtaaataaatcttaactccatgacttatttcacaaaat  28896800                   <---------ARR11(3)            <---------AHL20(2)            --------->AHL20(2)          --------->AHL20(2)             <---------ICU4         <---------AHL20(1)             <---------ATHB51       --------->SPL7                      <-         --------->AHL20(1)  <------MYB46(1)        --------->YAB1                                 --        --------->AHL20(2)   ----------->GT1  ------->TEIL  <---------ANAC55(2)                   ---      --------->AHL20(2)     <------MYB83--------->YAB1     <---------ANAC58                      <-- --------->At5g28300        --------->MYB59<---------YAB1   <---------ANAC46                      <-- ---------->GT1    --------->ARR11(3)   --------->ICU4      <---------ANAC58                ---------   gactgtaaaaatatatatatagatattaagtaggtttaaacaattatgaatctatgaaaaatgcgtatgtcgagtctttctaatacaaaacttcatacaa  28896900                                    <---------AHL20(1)                                    --------->AHL20(1)                                --------->YAB1                               <---------YAB1                                  --------->ANAC46                             --------->YAB1                          ---------->CDC5 ------->GAMYB                             <---------ICU4                     ----------->HVH21  -------->P                            <---------ATHB51                  <------MYB83 <----------DOF2      ---------->DOF2       --------->ICU4                    <------MYB46(1)  --------->ANAC58 --------ICU4               <---------ATHB12       --------->At4g35610   <---------ZAT18 ------->YAB1             --------->WOX13(1)       <---------At4g35610 --------->At4g35610 ------>ICU4            ------------>CBF      --------->YAB1 --------->MYB111(1)   --------->ANAC58 -------ATHB51        ----------->GT1        <---------ATHB12--------->MYB111(2)   --------->ANAC58 -------ATHB12    <---------AHL20(2)--------->ARR11(3)       --------->MYB46(2)--------->ANAC58 >AtLEC2         --------->AHL20(2) <---------ARR11(3)  *TSS<--------P <---------At4g35610<------ZmHOX2a(1)   ataatgaccaaagagaatataaaatagtcaattatgaaaatattcaaatgataagcagacaagtaggtgactcagcgcattaagcaacccaaggacaaaa  28897000                                                          --------->MYB46(3)                                                        --------->ARR14(2)                                                        <---------ARR14(2)                                                    <---------LBD16                                                  <---------ARR14(2)                                                  --------->ARR14(2)                                                 ---------->DOF2                   <---------DAG2              --------->ANAC46                   <----------DOF2            ----------------->AG                  <---------DAG2              ----------------->AGL2               <-----------GT1                ----------------->AGL1              <-----------GT1                --------->ANAC58          <---------AHL20(2)               --------->GLK1(1)                                  <------       <---------ARR11(3)                 <---------ARR14(2)   --------->YAB1                 <------       <---------AHL20(1)            ------>ZmHOX2a(1)--------->LBD16                   <---------YAB1       --------->AHL20(1)    <---------ALFIN1--------->ANAC58 ----------->HVH21   <---------ZAT18       --------->AHL20(2) <-----------GT1 --------->ARR14(2)  <---------ATHB12   <---------ANAC46   tgggaactatatattatttcccttttcttcaccactctccttccgatacccaaaaccggaaccaatgacaacgcataccaatggcgcattctcatacttt  28897100                                                               ------>MYB83                                                               ------>MYB46(1)                                                              --------->MYB52(1)                                                             --------->TOE1(2)                                                             --------->TOE2(2)                                                       --------->DEAR3(1)                                                       --------->RAP2.6(2)                                                      <---------------------WRI1                                                      --------->RAP2.3(1)                                                      <------NtERF2                                                     --------->At4g35610                                                     --------->LBD16                                                     <---------ATERF1(1)                                                     ------>NtERF2                                                     --------->ABI4(1)                                                    --------->RRTF1(3)                                                    --------->RAP2.3(3)                                                    <---------ATERF1(2)                                                    --------->ATERF1(2)                                                    --------->RAP2.3(2)                                                    <---------DEAR3(1)                                                    --------->DEAR3(1)                                                    --------->RAP2.6(2)                                                    --------->RRTF1(2)                                                   --------->RRTF1(1)                                                   --------->ORA47(2)                                                   --------->DEAR4(2)                                                   --------->ERF1                                                   --------->ATERF1(1)                                                   --------->RAP2.6(1)                                                   --------->RAP2.3(1)                                                  <---------At4g35610                                                  --------->LBD16                                                  <---------ATERF1(1)                                                  --------->At4g35610                                                  ------>NtERF2<---------LBD16     <-----------GT1 --------->ANAC46             --------->ABI4(1) ----DOF2  <---------MYB52(1)                    --------->DEAR3(1)         ----------->GT1        -- ---DAG2  <----------DOF2                        --------->ANAC46--------->LBD16                 <---   tccgattttaccctttagttttcccacaattctcgattagaccatttctctccgccgccgaaacctacggagaaggaagagaaaaaccatggaatcgtct  28897200                                                                           <------ZmHOX2a(2)                                                                          <---------ARR14(2)                                                                          <---------ARR11(3)                                                                          --------->AGP1                                   ------>ZmHOX2a(2)                      --------->ARR14(2)                                   ======================HOX2a_HOX2a     <---------At4g35610                                 <---------GLK1(2)                       <---------GLK1(1)                                 --------->AGP1                       --------->At4g35610                                 <---------ARR11(3)                   <---------At4g35610                                 --------->ARR14(3)               <---------ARR11(3)                                 <---------ARR14(3)               --------->ARR14(2)                                 --------->ARR11(3)               --------->ARR11(3)                                 <---------AGP1                 <---------YAB1                                 --------->ARR14(2)           --------->YAB1                                 <---------ARR14(2)         --------->ARR11(3)                                 <-----------ARR10         --------->GLK1(1)<-------TEIL                                <---------CCA1(2)          <---------TGA2(1)------>ZmHOX2a(2)               ----------->RAV1(2)<------ZmHOX2a(2)        --------->bZIP60(1)               <---------At4g35610=======================HOX2a_HOX2a------>ZmHOX2a(2)  <---------WRKY12          ----------->RAV1(1)   =========================HOX2a_HOX2a              <  <---------ZAT14          --------->ANAC46       ================================HOX2a_HOX2a   -----  --------->ZAT14  <---------GLK1(2)      <---------CCA1(2)<---------bZIP60(1)         <---------ARR11(3) ------->LBD16 =========================RAV       =================================HOX2a_HOX2a ------ ------LBD16 <---------ALFIN1   <---------ARR14(1)------>ZmHOX2a(1)--------->At4g35610 --------->ARR11(3)   ccggtaaactgtcttccacctgattctctccaccagatcttctcatctcttcctattcgtgatatcatgatctgcagatccgtctgcaagttcttcaacc  28897300                                                                                              -------                                                                                             <-------                                                                                             <-------                                                                                            ---------                                                                                            ---------                                                                                    --------->ZAT14                                                                                   ----------->RAV1(1)                                               <---------MYB52(1)               --------->AtMYB61                                              <-------GAMYB                     --------->ANAC46                                             --------->DEAR3(1)                 <---------ALFIN1-----                                           <------NtERF2                  <---------ICU4 <---------WRKY38(1)                                           --------->LBD16               ------>ZmHOX2a(1)<---------At5g28300    <-----------GT1                      --------->SPL7              --------->AtMYB61 <-----------HVH21 ----------DOF2                        <-----------HVH21          ------>NtERF2--------->MYB46(3)  <- -->GAMYB                      --------->TOE2(3)   ------->TEIL  ----------->HVH21 --------->AtMYB61 --->MYB46(3)             <---------GLK1(2)------>NtERF2         --------->DEAR3(1)<---------ALFIN1--   agcttttgacctctcagtgtttcatagagattatctcaactcgtccgccgttgaatctactcgctctccgacctcctcatcaccaccacagtcaccgtca  28897400                          ------------------>SPL14                         ----------->HVH21                      --------->ARR14(2)                     --------->GLK1(1)                     <---------GLK1(1)                     --------->HSFB2a(1)                     <---------HSFB2a(1)                     <----------TaMYB80                 --------->MYB46(3)               --------->MYB52(1)            <---------ANAC55(2)            --------->ANAC58    --------->MYB52(1)<---------ARR14(2)                                                            <   <---------ARR14(2)<---------KAN4(1)                                                              <   --------->ARR14(2)--------->KAN4(1)                           <---------MYB46(3)                 - ---->HVH21 --------->ANAC55(1)                                 <---------ATHB12                   -- ----HVH21  --------->ANAC58                                 --------->ATHB12                      <- ----TGA1<---------ARR14(2)         <-------TEIL           --------->GLK1(2)                 <------- >ANAC46 --------->ARR14(2)     --------->SPL7        <---------ZAT14                       <-------- >DEAR3(1)  --------->ANAC46--------------->AtSPL3    --------->At4g35610                ============ ----->DOF2 --------->ANAC55(2) <-------TEIL       --------->LBD16                       ============ --------At4g35610  <---------KAN4(2)            ------>ZmHOX2a(2)                  <---------GLK1(1) ------->At4g35610  ---------->TaMYB80    ------->TEIL--------->ZAT14     <-------TEIL   ------>ZmHOX2a(1)   cagcggaaacggacacgcaacgaatatccgaccgtacatccatgtatatgatccagagcagaatcaatggttcagattcaatctcgatttcctccctttc  28897500  Previous    Next  AGI:  At1g76920.1    Description:  F-box family protein (FBX3). Identical to F-box only protein 3 (FBX3) [Arabidopsis Thaliana] (GB:O49279); similar to unnamed protein product [Vitis vinifera] (GB:CAO65132.1); contains InterPro domain Kelch repeat type 2 (InterPro:IPR011498); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810) Range:  from: 28896956    to: 28898570    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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