Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                              --------->HSFB2a(2)       <---------AHL20(1)                                       --------->HSFB2a(1)            --------->AHL20(2)                                       <---------HSFB2a(1)            --------->AHL20(1)                                      --------->ARR11(3)              <---------AHL20(2)             --------->MYB52(1)       <---------ARR11(3)             --------->AHL20(2)           --------->TOE2(3)         <---------GLK1(1)           --------->ICU4           --------->TOE1(2)    <---------ZAT14           <----------DOF2           --------->TOE1(3)           --------->TOE2(2)    --------->ZAT14        <---------ARR11(3)           --------->TOE2(3)    --------->TOE2(3)          --------->ALFIN1        --------->ARR11(3)        --------->ANAC46 ----------->RAV1(1)           ----------->GT1    --------->AHL20(2) <---------AHL20(2)--------->AHL20(2)   caacaacatcaaacctaagtgagtaactcaagagtgtagaaatcttccaaaatttaagaactttgtcaaaattaaatttacacaaaccataaattcccaa  28860200                                                                                        --------->ARR14(2)                                                                                       ------>MYB46(1)                                                                                       ------>MYB83      ---------->CDC5                                                                <---------MYB59   <---------ZAT2                                                                <----------ID1  ----   <---------At4g35610           <---------HSFB2a(2)                          ---------->DOF2  ------  --------->ANAC58               --------->HSFB2a(2)               <----------DOF2<------ZmHOX2a(1)  --------->ANAC58  <---------HSFB2a(2)               --------->YAB1     --------->LBD16<---------ARR14(2)   ttgcaagctcatcgccataactcgagaaaacgtttttagaaactgaaacttgaaaatcaaaaccctagactttcccccaaaaaaggaccaaattcgacac  28860300                                                                                                    -                                                                                               <-----                                                                                               ------                                                                                             --------                         <-----------GT1                              ----------->HVH21      --------   ----------->GT1    ----------->GT1                                 <---------ZAT6      --------->ZAT2 ----->AtMYB61       --------->DAG2                           <---------AHL20(2) <---------TOE2(3)  - >NtERF2            ---------->DOF2            --------->ALFIN1     ----------->GT1       <---------ZAT2   caaaacagtgaaatcggcaaaataaagttacaaaattcaaacgaactatgtgtggaacgagtattttaagtagtgacaagttcaaggtactaagcagggc  28860400            ----------->HVH21          <---------ANAC46          <---------ANAC58          <---------ANAC55(2)                                                                  <-----         --------->SPL7                                                                 ------>ZmHOX2a(2)       <---------SPL7  --------->LBD16                                                  =============       --------->TOE2(2)                                                               ==============       --------->TOE1(2)                                                               <------ZmHOX2a(2)     <---------------AtSPL3                    <---------ANAC58                       --------->ARR11(3)     --------------->AtSPL3                    <---------ANAC58                       <---------ARR11(3) -------->ANAC58 <---------ANAC58             <---------ZAT2                          <---------AGP1 ----ZAT18<---------ANAC58                    --------->ZAT2                          --------->AGP1 --->ZAT18--------->ANAC55(2)              --------->LBD16                            <---------ARR14(2) ->ANAC58------->TEIL  ------>NtERF2     <---------LBD16  --------->GLK1(2)           --------->ARR14(2) ->ANAC58<-------TEIL <---------ANAC46----------->HVH21  <---------GLK1(2)           <---------CCA1(2) -------->ANAC58 <---------ANAC58  <-----------HVH21   ----------->ARR10           --------->YAB1   -   acaagaaaacgtacgtgaagcttgccgcgaagttcgcggtctgaccggagcttgacatagattctctcgtcgagactcagcctaatcagatctagtggct  28860500                      ----------->HVH21         <---------ANAC46        <---------ETT(2)         <---------ANAC58        --------->ETT(2)        <------NtERF2 --------->LBD16                            --------->HSFB2a(2)       <---------MYB46(3)      --------->REM1(2)    <---------ZAT2       ------>NtERF2 --------->DEAR3(1)             ----------->RAV1(2)       --------->ABI4(2)--------->SPL7              --------->ZAT2                               <--- --------->MYB52(1) <---------LBD16                 --------->At4g35610                        <----- <---------ALFIN1 --------->ANAC46                <---------ALFIN1                        ----------- ----PCF2<---------ANAC58   <---------ANAC46   ------>MYB46(1)   <---------HSFB2a(2)    ------->TEIL =======================HOX2a_HOX2a            ------>MYB83      <---------LBD16  --------->TOE1(2) =======================HOX2a_HOX2a        <-----------------------TaNAC69(2)     --------->DEAR3(1) ---------->HVH21------>ZmHOX2a(1)        <-----------GT1  <---------ALFIN1      --------->DEAR3(2)--   ccctcacggtggcttcttcctcgccggacatcgtgtagacagagataccttcccacctgaaacacttctcggagggttttggtaccgacgaatcgtataa  28860600                            ------->TEIL                                         --------->MYB52(1)                         --------->ANAC58                                        ----------->RAV1(1)                         --------->ANAC58                                   ------->GAMYB                      <---------ARR14(2)                                   --------->MYB46(3)                      --------->ARR14(2)                          --------->AHL20(1)                     ------>NtERF2                                --------->ARR11(3)  <---------GLK1(2)                    --------->LBD16                              --------->AHL20(2) ------->GAMYB ------LBD16        ----------->HVH21                      <-----------GT1 <---------ALFIN1 ------GT1        <---------LBD16                      <---------ARR11(3) --------->At4g35610 >GT1        --------->ARR11(3)                        --------->ARR11(3) <---------At4g35610 ------->LBD16 ------>ZmHOX2a(2)            *TSS     <---------TOE2(3)   ----------->RAV1(1)---------   ccggacacaaactctgatctcgcggacacgaacttaacaattttgttctacgaataagattttacaaatatatggcaacagcccaacagaatattaggcc  28860700            <------NtERF2          <---------DEAR3(1)                          <---------YAB1       --------->HSFB2a(1)                         <---------AHL20(1)      ------->TEIL                                 <---------AHL20(2)                    <------MYB46(1)     --------->MYB52(1)                            --------->AHL20(1)                    <------MYB83   <---------MYB52(2)                   --------->MYB52(1)       <---------GLK1(2)   --------->STY1(2) >MYB59<---------HSFB2a(1)     <-----------GT1     --------->AHL20(2)<---------YAB1  <---------STY1(2)   cataaacgaacgttggcgaaaaaatgttttttttttcaaaactatcggcatattttattatttcaaagattatcaatgggttctactagctaggttctac  28860800                                                                                                  <--                                                                                                  <--                                                                                              <------                                                                                              <------                                                                      --------->AHL20(2)     --------                                                                      <---------AHL20(2)     --------                                       <---------CCA1(1)           --------->ARR11(3)        <-------                                       <---------RVE1(1)    <---------TOE2(3)                <-------                                      --------->ARR11(3) <---------AHL20(2)       ----------->GT1 ---                       --------->ARR11(3)                <---------YAB1<---------AHL20(2)  <---------TOE2(3)                       <---------ARR11(3)       --------->ZAT14    <---------ARR11(3)      <---------YAB1                     <---------AtMYB61<---------ARR11(3)--------->TOE2(3)     <---------AHL20(2) ----   ttctaccttgagaaaattgagttgaggtcttgtatgtatagatatttcagtaaacaaatattaatgttagattttaattttaaaatgtaaattaagatat  28860900     ---------->ID1     <---------TOE2(3)                                                                             <-    <-----------GT1                                                                                <- -------AHL20(2)                                                                                   <- -------AHL20(1)                                                                                   -- ---CCA1(1)                                                                 ------------>AtMYB77   <- ---RVE1(1)                                                              xxxxxxxxxxxxxxxx>smallRNA(i) ->ARR11(3)                                                           xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ->AHL20(1)                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --ARR11(3)                --------->MYB52(2)              <-----------GT1 ----------->HVH21       <- --AHL20(1)               <---------TOE1(2)            <----------DOF2xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ------>AHL20(2)         <---------MYB52(1)            <---------DAG2<-----------GT1              <-- ----->AHL20(2)       <-------TEIL               <-----------GT1  <---------REM1(1)    ---------->DOF2   taaatttgacgttttgtacttcgattcgtttgttttctacttacaagcgtttcacaacttttttcgagttgtaacgcttgacagtttcacaaagtaagca  28861000                                                  <---------ARR11(3)                                                  --------->ARR11(3)                                                  --------->ARR14(2)                                                  <---------ARR14(2)                                           --------->ARR14(2)                                           <---------ARR14(2)                                          ------>MYB46(1)                                          ------>MYB83  <---------HSFB2a(2)                                        <---------------AGL15                                        --------------->AGL15              --------->ATHB12         <-----------------AGL1                       --------->YAB1              <--------HAHB4           <-----------------AGL3                       <---------ICU4 ----------->GT1                       ----------------->AGL2           <---------ATHB12 --------ANAC46                        ----------------->AGL3          ------>MYB46(1) --------ANAC55(2)                     ----------------->AG            ------>MYB83 <-----------GT1 --------ANAC58  --------->AHL20(2)    ----------------->AGL1<---------ANAC55(2)   <---------ATHB12 ------->ANAC55(2)                     <-----------------AG  ----------->GT1<---------DAG2 --------ANAC58  <---------AHL20(2)    <-----------------AGL2--------->ANAC55(2)<---------AHL20(2) --------ANAC55(1)           <---------TOE2(3) ----------->GT1        --------->WOX13(1) ---------------------TaNAC69(2)     <-----------GT1    --------->HSFB2a(2) <----------DOF2   tacgtgtaaaatagaatcatttattgtgactaatgtttttaaccaaatatggtatcttctaaaacgtgataccaatcactttttaatcactatatacaaa  28861100  Previous    Next  AGI:  At1g76860.1    Description:  small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative. similar to small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative [Arabidopsis thaliana] (TAIR:AT1G21190.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ80158.1); similar to Os01g0866700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044909.1); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649); contains InterPro domain Like-Sm ribonucleoprotein-related, core (Inte Range:  from: 28859308    to: 28860644    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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