Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                <-------GAMYB                                                                             --------->MYB55(2)                                                                             --------->MYB52(2)                                                                             <---------MYB46(3)                                                                           <-------GAMYB                                                                         <---------RAP2.6(2)                                                                         <---------ANAC58                                                                         <---------ANAC46                                                                         <---------DREB2C(2)                                                                         <---------ANAC58                                                                    ===============MYC_MYB           <---------TOE2(2)                                        <---------ANAC46           <---------TOE1(2)                                        --------->O2         --------->TOE1(2)                                          <---------ANAC58       --------->ARR11(3)<---------ANAC58            <---------GLK1(1)  <------NtERF2   ---------->DOF2       <---------ANAC58            --------->GLK1(1)--------->ALFIN1           <--- -------ANAC58           <---------ANAC46         --------->LBD16   <---------O2                 <--- -------ANAC58       <---------ALFIN1    <---------ANAC58           <---------ANAC58             <--- -------ANAC46 --------->GLK1(1)         <---------ANAC58           <---------TGA1a     <-----------GT1 ----WOX13(1)<------ZmHOX2a(1)           <---------ANAC46  <---------LBD16<---------MYB46(3)     <---   gcttgaaaagacctaggattgccactcgcgtgcaagggagattgcttgagaccgggtttctctcggagagtcgtggcggtcgttgaaaattttctagttt  28842100                                <-----------RAV1(2)                             --------->At4g35610                             --------->ZAT2          --------->ZAT14    <---------ZAT2                            <---------ICU4          <---------ZAT14    <---------At4g35610                       ------>ZmHOX2a(2)   --------->ANAC58     --------->ANAC46                               =============================HOX2a_HOX2a   --------->ANAC58     --------->ANAC58                             <---------ARR11(3) ------ANAC58           --------->ANAC58                     <---------CCA1(2) ------LBD16        ------>ZmHOX2a(2)                      <---------ANAC58                  ------>ZmHOX2a(1) ------ANAC46     --------->ARR11(3)               ------->TEIL      --------->ARR11(3)     --------- ------ANAC58     <---------ARR11(3)  <---------YAB1       <---------ANAC58     <---------CCA1(2)   cgggcaagtcagtgaagtatgatctcactccagctcaggtatcatggaacatgaacctttggcttatctctgatcttgactcatctctctccatcctcaa  28842200                                                         <---------AtMYB61                                                       <---------ANAC58                                                       <---------ANAC58                  <---------At4g35610                  <---------ANAC46                  --------->At4g35610                  <-----------RAV1(1)       ------->MYC3                                <---------ANAC58       ------->MYC2                              <---------YAB1       <-------MYC3                            --------->YAB1                              <---------WOX13(1)       <-------MYC2     <----------DOF2       <-------TEIL                <---------DAG2<---------YAB1 >TOE2(3)     <----------DOF2     --------->CCA1(2)<---------ANAC58       <----------DOF2--------->ATHB12   caatggacacatgcttctttagctgacttttgttagataggcataacattcatgcttgtgtggtttagtagaaacacttttcgactgtctatgattgatt  28842300                                   <---------DAG2                                   <----------DOF2                               <-----------GT1                         <---------ARR11(3)                         --------->ARR11(3)                         --------->AHL20(2)                         --------->AHL20(1)                         <---------AHL20(1)                       <---------ARR14(2)                                                     -------                       --------->ARR14(2)                                                <---------TOE2(3)                       --------->ARR11(3)         <---------YAB1                      <---------YAB1                       <---------ARR11(3)      <----------DOF2                     <---------YAB1       --------->At4g35610  <---------AHL20(2)<---------ANAC58      <---------ANAC58--------->ATHB12       <---------At4g35610  <---------YAB1    <---------ANAC58      <---------ANAC58-------->HAHB4     <-----------RAV1(2)--------->CCA1(2)<----------DOF2----------->GT1            --------->ICU4  <-   cagccattcaggtgagaacggggcagatatattattcctttttcttttgcttttgattttgtgaatttgggcttgttagaagaaaatgattaatgtttgt  28842400                                                   --------->YAB1                                                   <---------ICU4                                                   -------->HAHB4                                        <------------CBF                                       <---------ICU4                                       <--------ATHB1                                       -------->HAHB4                                       --------->ATHB12                                       --------->ATHB51                                      <---------ATHB51                                      --------->ICU4                                      <---------AHL20(2)                                 <----------DOF2  --------->ICU4                           --------->ALFIN1       <---------ATHB12                   <---------ANAC58   <---------YAB1    <------------CBF                    <------ZmHOX2a(1) ---->GT1    <------------CBF<------ZmHOX2a(1)<-----------------AGL3                    ---------->DOF2 -----------CBF    <---------ANAC58 --------->YAB1<---------ATHB51 <---------ZAT6  --------->AHL20(2)   aaattgggttttgaatattgggcttgggagaggagctttaataattgggctaataatggattggaattagagttgagaaattagattaaaaaaaggatta  28842500                                                                 <---------HSFC1(2)                                                                 --------->HSFC1(2)                                                       <---------O2                                                       --------->O2                                                       --------->ANAC58                                                       --------->ANAC46                                                       --------->ANAC55(2)                                                       --------->TGA1a                                                       <---------ANAC55(2)                     ------                                                       --------->ANAC58                        ======                                                       <---------TGA1a                  ------>ZmHOX2a(1)                                                       --------->ANAC55(1)              =============                                             <---------YAB1      <---------At4g35610  ----------->RAV1(2)                                           ======================bZIP_DOF          <---------At4g35610                                 --------->MYB52(1)    ==============================================   <---------ZAT6    <-----------GT1       <----------DOF2 --------->DAG2 <---------GLK1(2)    <-----   gattagtgatgaagtaagagtttttgctctctctcaaacggctcgctttgattactcacgtaaggtaagcttcttcgattctctcatctcctgtgtcctt  28842600        ------>ZmHOX2a(1)       --------->TOE2(3)                --------->ATHB12     <------ZmHOX2a(2)                <---------WOX13(1)   --------->GLK1(2)    <---------ARR14(2)           <---------LBD16      ---------->DOF2           <---------AHL20(2)    --------->ARR14(2)          ----------->RAV1(2)  <------NtERF2     --------->ARR14(2) >ZmHOX2a(1)                  <-----------GT1       --------->LBD16--------->ATERF1(1) ===========HOX2a_HOX2a <---------AHL20(2)         --------->RAP2.6(2) <---------ARR14(2)           - ===========HOX2a_HOX2a<---------AHL20(2)         <---------LBD16  --------->DEAR3(2)             <-- =====bZIP_DOF         --------->AHL20(2)   --------->ATHB12     --------->ARR14(2)         --------- -----DOF2             <---------AHL20(1) <---------WOX13(1)     <---------ARR14(2)       <----------   tgtgccgatcctcaaaaaaaactaatttttttttacctggattgattgattagccggaaagaatttggaaccggctctgtaatttatccatgggtcggaa  28842700                                                    <---------DEAR3(2)                                                    <---------MYB46(3)                                                    <------MYB83                                                    <------MYB46(1)                                                   <---------TOE1(2)                                           <---------At4g35610                                           <---------CCA1(2)                                       <-----------HVH21                                       <-----------TGA1                                      <------- --------->ATERF1(1)                  <---------ANAC46                  --------->GLK1(2) --------->ICU4 <------NtERF2       --------->ICU4   <---------ANAC58                 <---------GLK1(1)  <---------YAB1 -------->At4g35610<---------At4g35610<---------ANAC58                 --------->GLK1(1)--------->YAB1 ----ZmHOX2a(1)--------->ALFIN1 <---------ALFIN1   <---------TOE2(2)--------->ANAC58   --------->ICU4 >ETT(1) --------->HSFB2a(2)   --------->MYB46(3) <---------MYB52(1)--------->ANAC58   <---------YAB1 -HVH21  <---------HSFB2a(2)  -------->P   --------->At4g35610 <---------YAB1         <---------TOE2(3)   ggagccgagttctcgaggtggagatgatgagcaaccacttgcgtcatctctcgttggttctaaatctgataagaaatctgttcaaattgatgatgatgaa  28842800                                                                                                  ---                                                                                                  ---                                                                                                 ----                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                              =======                                                                                              -------                                                                                            <--------                                                                                            <--------                                                                                            ---------                                                                                           ----------                                                                                           ==========                                                                                        --------->ANAC46                                                                                        --------->ANAC58                                          <-------GAMYB                                 --------->ANAC58                                         --------->MYB111(2)                           <-------TEIL                     ---------->DOF2     <---------MYB46(3)        --------->ANAC58    --------->SPL7               <------ZmHOX2a(1)     <---------TOE2(3)   >>>>>>>>>TBF1---------->DOF2<---------SPL7<-         <---------ANAC58     <------ZmHOX2a(1)--------->ZAT6      --------->ANAC58<---------------AtSPL8 --YAB1  <---------ANAC58   <---------TOE2(3) <---------YAB1   ----------->GT1--------->YAB1---------   tactcaatatgtcttgaggagcctaaagttgaggaaaacaaggttgttatcactgggaagaagaagggtaagaaaaggaataagaagggtacgcagcagc  28842900    ----------->TGA1  <------ZmHOX2a(1) ------>At4g35610 ------>ZAT2 ------->RAV1(1) --->At4g35610 ----At4g35610 --->ZAT2 ==========RAV ---->RAV1(1)                                    <---------MYB46(3) -ZAT2                               <---------MYB46(3)--------->LBD16 -At4g35610                         <---------AtMYB61 --------->HSFB2a(2) >ZAT2                              --------->ALFIN1  <---------ANAC46 ->RAV1(1)                        <---------ANAC46    <---------HSFB2a(2)    --------->YAB1 ==========RAV --------->ARR11(3)<---------DEAR3(1)  <---------LBD16        --------->ICU4  --------- ----------RAV1(2)  <---------At4g35610  <------ZmHOX2a(1)              ----------->GT1    --------->DAG2 >At4g35610  <---------YAB1     <---------LBD16 <--------P      <----------DOF2 --------->YAB1    ---   agcaggatgacgacgatgattttgctgataagtttgcggtggaggaagaggttgttccggataatgcttttgtagggaataataagaagtcgaaaggtaa  28843000  Previous    Next  AGI:  At1g76820.1    Description:  similar to eukaryotic translation initiation factor 2 family protein / eIF-2 family protein [Arabidopsis thaliana] (TAIR:AT1G76810.1) Range:  from: 28842467    to: 28843745    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g76825.1    Description:  translation initiation factor. similar to eukaryotic translation initiation factor 2 family protein / eIF-2 family protein [Arabidopsis thaliana] (TAIR:AT1G76810.1); similar to translation initiation factor [Arabidopsis thaliana] (TAIR:AT1G21160.1); similar to translation initiation factor [Arabidopsis thaliana] (TAIR:AT1G76720.1); similar to translation initiation factor [Pisum sativum] (GB:AAN32916.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65136.1); contains InterPro domain Translation elongation factor EFTu/EF1A, domain 2; (InterPro:IPR004161); contains InterPro domain Translation initiation factor 2 related (InterPro: Range:  from: 28842467    to: 28847460    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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