Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    ---                                                                                    <---------TOE1(3)                                                                                    <---------TOE2(3)                                                                               <---------ICU4  <-----                                                                              <---------------AGL15                                                   --------->TOE2(3)          --------->ICU4<--------                              >>>>>>>>>>>>>>>>>LFY --------->YAB1             --------------->AGL15    <---------AHL20(2)  ----------->GT1            --------->TOE1(3)         <-----------------AGL2   tttcattttttttttcaagtgagaaattgtaaaaccagtgtttgtttgtataatcttaataaaccgagaactactaaatactaattaaggttttaaaccg  28764200                                                     --------->ARR14(2)                                                     --------->ARR11(3)                                                     <---------ARR14(2)  ----------->GT1                            --------->DAG2                  <---------ICU4 ------>REM1(2)           <------ZmHOX2a(2) ---------->DOF2   ----------->RAV1(2) ----ANAC46        <---------ZAT14   --------->LBD16 <---------ARR11(3)     <-------TEIL   --------->LBD16 ---GT1  --------->MYB52(1)      --------->MYB52(1)----------->ARR10 <---------MYB59      <---------LBD16   tgtaacgaaaataactgggagtaaaccgatcgagcaaaccgggtcttaaagcgaagatacttgggcctgggcctaatattcattccactaatccagggtt  28764300                                                                      <------MYB83                                                                      <------MYB46(1)                                                                 --------->AHL20(1)                        <---------ANAC46                         <---------AHL20(2)                        ----------->GT1--------->YAB1            --------->AHL20(2)                        <---------ANAC55(2)                     <---------AHL20(2)           --------                    ------->MYC3      <---------YAB1            --------->AHL20(2)      <------NtERF2            --------->YAB1   --------->ICU4                  --------->AHL20(2)        ------>NtERF2          ------->TEIL  <---------ANAC58                     <---------AHL20(2)------->TEIL <--------  <---------ANAC55(2)   <---------ANAC58  --------->YAB1    <---------ATHB12   --------->ARR11(3)  --------->ANAC55(2)   --------->ANAC55(2) --------->ZAT6  --------->AHL20(2)<---------CCA1(2) <---------ICU4     <-------MYC3<---------YAB1          <---------MYB59   <-----------TBP--------->DEAR3(1)   taataagtaatgtatcaaaacacatggcgtaattttgattttgataatactacaagggcctaataaataatttggtttttgtatcttgacgccgatgatt  28764400      <-----------HVH21     --------->LBD16 <---------TOE1(3)                                                    <----------   <---------LBD16   <---------TOE2(3)                                    <---------ICU4  --------->ARR11(3) ->ATHB12     ---------->DOF2           ----------->GT1               <---------AHL20(2)  <---------ARR11(3) -ATHB12     <------ZmHOX2a(1)          <---------ZAT6        <-----------GT1            --------->YAB1   tgttttccggtgagaggaaagttagggtttgagtaagagatagagtaaacaagaaggaagaaattcacatgtttaatctttcccttcttaattatcttca  28764500                                               --------->ZAT6                                          <----------DOF2                                         ------>ZmHOX2a(2)                                <---------ARR11(3)                                --------->ARR14(2)                                --------->ARR11(3)                      ==========================HOX2a_HOX2a                      ------>ZmHOX2a(1)--------->ARR11(3)                 <----------DOF2<---------ARR11(1)                       <------ZmHOX2a(1)              <---------YAB1    <-----------ARR10                      <---------TOE2(3)         ----           <---------YAB1       <---------ARR14(2)                 <------------CBF     <------ZmHOX2a(1)   <------------CBF   --------->LBD16  <---------ARR11(3)    --------->HSFB2a(2)    --------->ALFIN1 -GT1      <---------AHL20(2)  <---------CCA1(2)             <---------HSFB2a(2) <---------DEAR3(1) <   cttcagattgaatattattctttcctggtttccaaatcttcgatctttcacactaaatttgttctaaaacattgaggaagacgacggtgaggatggaatt  28764600   <---------At4g35610   --------->At4g35610         <---------At4g35610                            --------->AHL20(2) ------>DOF2                   --------->At4g35610                     <---------ETT(1)       <------ ---------At4g35610          <-----------RAV1(2)             --------->MYB52(2)           <----------DOF2   agagcagcttaagaagtctgtagaagagaacccagatgactcttctctacaattcgaactcgtaagttgttttccgaccataaatttagttcctttacta  28764700                                                                                                    <                                                                                                    -                                                                                                   <-                  <---------At4g35610                                                             <--                 --------------->AGL15              <---------WOX13(1)                         ------           <---------ARR11(3)                     --------->ATHB12  <-----------RAV1(1)       -------           --------->ARR14(2)            <----------DOF2         ------->TEIL           <-------TEIL<           <---------ARR14(2)      <---------HSFB2a(2)           <---------ARR14(2)    --------->GLK1(2)           --------->ARR11(3)      --------->HSFB2a(2)           --------->ARR14(2)   <---------ARR14(2) ---YAB1  <---------CCA1(2)   <---------AHL20(2) <---------YAB1 <---------CCA1(2)<---------ANAC46 <--   ttggttctcttggtatcttctgctaatggaattttttttggaactttgattttgattgcagggtttgtatctgtgggataatggtggagattcagagaaa  28764800                                 ------>ZmHOX2a(2)                                <------ZmHOX2a(2)                               --------->AGP1                               --------->ARR14(2)   <------NtERF2               <---------ARR14(2)  --------->LBD16             --------->At4g35610 <---------DEAR3(1)          ----------->ARR10 <---------ANAC46    <------NtERF2 --------->ALFIN1   <---------RAP2.3(1) ---------LBD16    <---------At1g77200                                                       ------>ZmHOX2a(2) -------->ATERF1(1)<---------DEAR4(1)            <---------ANAC58                            -------- --------RAP2.3(1) <---------DEAR3(1)            <---------ANAC46                          <---------ARR11(3) -------RAP2.3(2)  --------->ETT(1)--------->LBD16     --------->ANAC55(2)    <---------ANAC58 --->DAG2          <---------DREB2C(2)        --------->ALFIN1                <---------ANAC58 --->DOF2          <---------RAP2.3(3)    --------->ZAT14                     <---------ANAC46 ------NtERF2<-----------RAV1(1)--------->CCA1(2)<---------ANAC58--------->ZAT18           --------->ARR11(3) -------DEAR3(1)  <---------ORA47(1)      <---------ZAT14        <---------ZAT18  ----------->HVH21   gcggcggagcattttgtgttgtcggcgaaatcagatccgaataatgcagtggcgtttaagtatttagggcattactactcgcgtgtaacgcttgatctta  28764900                                                        --------->LBD16                                                      <---------LBD16                                                   <---------GLK1(2)                                                 <---------YAB1                                            -------->HAHB4                                            <--------ATHB1                                            <---------ICU4               <----------DOF2           --     --------->At4g35610   --------->ALFIN1<---------ATHB12     <----------DOF2                   ---  <---------At4g35610  --------->ZAT14     <---------YAB1     --------->HSFC1(2)                  <--  --------->At4g35610  <---------ZAT14--------->TOE1(3)<---------HSFB2a(2) <---------AHL20(2)     <--  <---------ZAT2       --------->ZAT18--------->TOE2(3)--------->HSFB2a(2)--------->AHL20(2)     <---  --------->ZAT2<---------YAB1----------->GT1<---------GLK1(2)<---------HSFC1(2)            --------- ->YAB1    <---------ZAT6  <---------ZAT6  --------->ICU4    --------->GLK1(2)    <---------WOX13(1)   atcgagctgctaagtgttatcagagagcagtgttgataaaccctaatgattctgattctggagaagctttgtgcgatttatttgatagacaagggaaaga  28765000                     ----------->TGA1           <---------ANAC58           <---------ANAC46           <---------RAP2.6(2)           <---------ANAC58 ------->GLK1(2)     ----------->HVH21                                                <------MYB46(1) ------>ARR11(3)   <---------ANAC58                                                   <------MYB83 -------GLK1(2)    <---------ANAC58                                                  --------->MYB59 -------ARR11(3)   <---------ANAC46                      <----------DOF2        <---------TOE1(3) ------RVE1(1)<---------MYB52(1)                <----------DOF2                 <---------TOE2(3)   < ->DOF2   <---------LBD16                 ------>ZmHOX2a(1)           ----------->GT1<---------AtMYB61   gattttggaaattgcggtttgtcgtgacgcttctgagaagtctcctaaggctttctgggcattttgtagattgggttatattcaggtttggtttcaattg  28765100  Previous    Next  AGI:  At1g76620.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G21060.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66316.1); contains InterPro domain Protein of unknown function DUF547 (InterPro:IPR006869) Range:  from: 28761415    to: 28764191    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g76630.1    Description:  tetratricopeptide repeat (TPR)-containing protein. similar to SEC (SECRET AGENT), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G04240.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAK43502.1); similar to hypothetical protein OsJ_031095 [Oryza sativa (japonica cultivar-group)] (GB:EAZ16886.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66317.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Tetratricopeptide TPR-1 (InterPro:IPR001440); contains InterPro domain Tetratricopeptide region (InterPro:IPR013026) Range:  from: 28764593    to: 28769680    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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