Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                              ---------                                                                                            <--------                                                                                            ---------                                                                                          <---------LBD16                                                                                        ------>ZmHOX2a(2)                                                                                        =============                                                                                        =============                                                                                        =============                                                                                       <------ZmHOX2a(2)                                                                                       ==============                                                                                       ==============                                                                                       <---------GLK1(1)                                                                                       --------->GLK1(1)                                                                                       ==============                                                                                      --------->ARR14(2)                                                                                      --------->ARR14(3)                                                                                      --------->ARR11(3)                                                                                      <---------ARR14(3)                                                                                      <---------ARR14(2)                                                                                      <---------ARR11(3)                                                                                    <------NtERF2                                                        <-----------GT1           <---------LBD16                                                <---------MYB52(1)             <------MYB46(1)              ------->TEIL                     <---------DEAR3(2)              <------MYB83<---------LBD16              -------->P    <---------TOE1(3) <---------DREB2C(2)             --------->MYB111(1)   --------->ATHB12         <---------TOE2(3) <---------DEAR3(1)              <---------AtMYB61 ------>ARR11(3)<---------ANAC58           --------->ANAC58                   --------->MYB46(2)    - -------ARR11(3)<---------ANAC58           --------->ANAC58                   --------->MYB59       < --->DOF2 ------->TEIL     <-----------GT1 --------->ANAC46                 <---------MYB52(1)    ---   ggtcttgatttgaatctaccttgtggttttaacgatgttgaaggcacgccggtggatttaaccagaccgagtaagaaggttaggtcgggatctccgggaa  28739800          --------->ALFIN1         <------ZmHOX2a(1)      --------->ATERF1(1)      <------NtERF2    <---------ANAC46    <---------DEAR3(1)    --------->ALFIN1   <---------At4g35610   <---------LBD16   --------->At4g35610   --------->ATERF1(1)   <---------ABI4(1)   <------NtERF2  <---------RAP2.6(1)  <---------ORA47(2)  <---------RRTF1(1)  ------>NtERF2  <---------ERF1  <---------RAP2.3(1)  <---------ATERF1(1) <---------RAP2.3(3) <---------ANAC58 <---------ATERF1(2) <---------ANAC58 <---------DREB2C(2) --------->ATERF1(2) <---------ANAC46 <---------RRTF1(3) <---------DEAR3(1) <---------RRTF1(2) <---------RAP2.6(2) <---------RAP2.3(2) >HSFB2a(2)    <------ZmHOX2a(1) -HSFB2a(2) <------ZmHOX2a(1) >LBD16--------->ALFIN1 ===============HOX2a_HOX2a =====================HOX2a_HOX2a        <---------ICU4 ==================HOX2a_HOX2a       <-------TEIL =====================HOX2a_HOX2a    ----------->GT1                   <------ZmHOX2a(1) ===============HOX2a_HOX2a         <--------P                        --------->ICU4 ==================HOX2a_HOX2a   >>>>>>>GRF7--------->YAB1           <---------TOE2(3) -------->ATERF1(1)             <-----------RAV1(2)   --------->ARR11(3)     --------->YAB1         - ---------ABI4(1)    --------->MYB52(1) <---------YAB1<---------ARR11(3)    <---------YAB1--------->DAG2 ------>ALFIN1----------->GT1 <-----------HVH21   <------ZmHOX2a(1)  <---------TOE1(3)   ---------->DOF2   gtggcggcggaggaggaggaaactatccgaagtgtcaggttgataattgtaaggaagatttatcaattgctaaggattatcatagaagacataaagtttg  28739900                                                                                    <---------GLK1(2)                                                                               --------->GLK1(2)                                                                        ---------->DOF2                                                                  <-----------RAV1(2)                                                              <---------ZAT14  --------->ARR14(2)                                                              --------->ZAT14  <---------ARR14(2)                                                        ======================RAV <---------YAB1                       --------->ARR11(3)        <---------ARR14(2)   ----------->HVH21          ---------->DOF2                        --------->ARR14(2) --------->At4g35610 <----------DOF2   <-------TEIL        <---------ARR11(3) <-------TEIL  ----------->RAV1(1)    <-----------ARR10 ---------->GT1    ---------->DOF2     --------->At4g35610   --------->ALFIN1 <---------GLK1(2)   tgaggttcatagcaaagctactaaagctcttgttgggaaacagatgcagaggttttgccaacagtgtagcaggtgaaagagaatctgattcttttgttcg  28740000                           <------------CBF                          --------->ATHB12                     <------MYB46(1)                         <---------YAB1      <------MYB46(1)   <------MYB83                         --------->ICU4      <------MYB83     --------->MYB59                     <-------GAMYB          <---------------AtSPL8                    <------MYB46(1)         --------------->AtSPL8         <----------DOF2                    <------MYB83          <------------CBF  <---------MYB52(1)                    <---------MYB46(3)   --------->ATHB12 <---------MYB46(3)                <-----------RAV1(1)<-----------TBP<---------DAG2      <---------At4g35610          <---------MYB52(1)<---------WOX13(1)    <----------DOF2     --------->At4g35610 --------->ALFIN1   tagtccatcttcgtttttttgttggttatgattgggtttttaaagattggtactttttagttgttaggtttcatctgctttctgagtttgatgaggggaa  28740100                      ----------->GT1                      <------MYB83      ----------->GT1               <------------CBF     --------->ATERF1(1)                                    ----------             ----------->ARR10      <------NtERF2                                 <---------LBD16----            <------NtERF2         <---------DEAR3(1)                            <---------AGP1  <----          <---------ANAC58        --------->ALFIN1                         <---------REM1(1) <-------          <---------ANAC46       <---------LBD16                       <---------TOE1(2)   --------->YAB1          <---------ANAC58    <-----------RAV1(2) --------->DEAR3(1)   <---------TOE2(2) <---------ARR14(2)    <---------REM1(1) <------MYB46(1)  <------ZmHOX2a(1)              <-----------RAV1(2)--------->GLK1(2)   gagaagttgtaggcgtagattggatggtcataacaggcggaggagaaaaacacagcccgatgcgattacatctcaggttgtagctctggagaatcgtgat  28740200                                                                 --------->ICU4                                                               <-------TEIL                                                           --------->ANAC58                                                           --------->ANAC58                                                      --------->ZAT14                           <---- ->GT1--------->YAB1            <----------DOF2       --------->ZAT18                         <------ ----->YAB1                    <---------ANAC58       <---------ZAT18                        <------- -----YAB1            ------->TEIL          <----------DOF2--------->ANAC46                 <-------- --YAB1    --------->ZAT6      <---------ANAC58       <---------ZAT14                 ------>ZmHOX2a(1)   aatacttctaataacactaatatggatgttatggctttgttaacagctttagtttgtgcacaaggtacttatgctctgcatcattctcctctctggtagt  28740300                                                      <------MYB46(1)                <---------ANAC58                                                      <------MYB83                   <---------ANAC58                                                     --------->MYB59              --------->LBD16        --------->GLK1(1)                           <--------P                   <---------LBD16        <---------GLK1(1)              <-----------RAV1(1)                       <---------HSFB2a(2)    --------->HSFB2a(2)                =====================RAV   <-----------------AGL2 -----AGP1                     <-----------GT1  <-----------RAV1(2)--------------->AGL15 ---MYB46(3)       --------->HSFB2a(2)------>ZmHOX2a(2)<------ZmHOX2a(1)        <---------LBD16 -P <---------HSFB2a(2)     --------->AHL20(2) <---------At4g35610<-----------------AGL3     -------- -MYB52(1)         <---------HSFB2a(2)========================HOX2a_HOX2a    <---------GLK1(1)   tctgttttggaaatccatgttttagaacaattttttctgatctgtggtctgcaggtaggaacgaggctactactaatgggtctccgggagtgcctcaaag  28740400                          <------ZmHOX2a(2)                         --------->ARR11(3)                                                        --                         <---------ARR11(3)                                                      <---                --------->ANAC55(2)            <---------ATHB12                                <-----                <---------ANAC55(2)        <---------ANAC58                                    ------             <---------GLK1(2)             <---------ANAC58                                    ------             --------->ARR14(2)        <----------DOF2                                    <------ZmHOX2a(1)             <---------ARR14(2)       --------->TOE2(3)                                  ----------->GT1 -->DOF2    <---------At4g35610  <----------DOF2  ------->TEIL                          --------->LBD16   agagcaacttcttcagatacttaacaagatcaaggctttacctttgcctatgaatcttacctcgaagttgaacaatatcggaattttagccaggaaaaat  28740500                       <---------------AGL15                       --------------->AGL15       ------->GAMYB   ------>ZmHOX2a(1)                                   <---------At4g35610     -------->P       --------->TOE2(3)                                    --------->At4g35610     -- ------->LBD16     ------->TEIL                                         <---------At4g35610        <- ------LBD16       --------->ARR14(2)                                <---------ANAC58           <---- ----ARR14(2)      <---------ARR14(2)                                <---------ANAC58       <-------- --->GLK1(2)--------->LBD16                                          <---------ANAC46    <----------DOF2 --->ARR14(2)--------->LBD16      <---------YAB1                ------->TEIL        <------NtERF2  --   ccggagcaaccctccccgatgaatcctcaaaatagtatgaatggggcttcttctccatctacgatggacttgcttgctgctctctcggcatctttaggtt  28740600                                                                                                -----                                                           --------->YAB1                     <------      <---------HSFB2a(2)                                  --------->ATHB12                 ------>NtERF2      --------->HSFB2a(2)                            --------->ANAC58                       ---------      <-----------RAV1(2)                          ---------->DOF2                         --------->ANAC46  --------->At4g35610                          ---------->DOF2  <------ZmHOX2a(1)         --------->At4g35610 ------->At4g35610                       <------MYB83--------->ANAC58                   ---------->CDC5 --------At4g35610                       ----------->GT1   <--------ATHB1             --------->AtMYB61 ---TEIL                                 <------MYB46(1)  --------->ICU4          ----------->HVH21 -TOE2(3)          <----------DOF2      --------->MYB59   <---------YAB1        <---------At4g35610 --------->RAV1(2) <---------DAG2       --------->MYB46(2)<---------ATHB12      --------->At4g35610   catctgctccagaggccatagcttttttatctcaaggagggtttggtaacaaagaaagcaatgataggactaagttaacttcttctgaccacagcgccac  28740700  Previous    Next  AGI:  At1g76580.1    Description:  transcription factor. Identical to Squamosa promoter-binding-like protein 16 (SPL16) [Arabidopsis Thaliana] (GB:Q700C2;GB:Q8W4C0;GB:Q9C9K0;GB:Q9SMW9); similar to SPL14 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 14), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G20980.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66308.1); contains InterPro domain Ankyrin (InterPro:IPR002110) Range:  from: 28740222    to: 28743811    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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