Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                     ----------->RAV1(1)                                                  --------->ANAC46                                                  --------->ANAC58                         ============================================================MADS_MADS                         --------------->AGL15    --------->ANAC58                         <---------------AGL15    ===================================MYC_MYB                   <---------AHL20(2)             --------->O2                   --------->AHL20(2)             <---------O2              <---------MYB46(3)                   <---------ICU4       <---------AHL20(1)             <---------MYB52(1) -------------AtSPL8    <-----------------AGL2<-----------HVH21      <---------------AGL15 ------------>AtSPL8  <-----------GT1   --------->AHL20(1)          <-----------------AG ---->YAB1        <---------ATHB12     --------->AHL20(2) --------->At4g35610<-------GAMYB ----YAB1         --------->ICU4  <<<<<<<<<<WRKY26--------->TGA1a   <-----------------AGL2 ->YAB1         --------->WOX13(1)<<<<<<<<<<WRKY43<---------TGA1a <-----------GT1                  <- -->GT1    <---------WOX13(1)     <<<<<<<<<<WRKY38<---------bZIP60(1)--------------->AGL15      <----   atagtacaaactaattggcaattaatactgtttttggtcaaatatatatgtcacgacagtagatgaaaataccgtttttggttgaatcgttttatttttt  28700300                                                                          --------->CCA1(2)                                                                       <---------ZAT6                                                                    ------>ZmHOX2a(1)                                                               --------->GLK1(1)                                                               <---------GLK1(1)                                                               <------ZmHOX2a(2)                                                              --------->ARR14(3)                                                              <---------ARR14(2)                   --                                                              <---------AGP1                       <-                                                              <---------ARR11(3)                   <-                                                              --------->ARR14(2)                   --         ------->TEIL                         --------->WOX13(1)------>ZmHOX2a(2) ---------->DOF2 ---        <---------CCA1(2)                   <---------ATHB12  --------->AGP1   ------->TEIL    ------ ---------DOF2                        <-------GAMYB           --------->ARR11(3) --------->YAB1------ -------GT1                     <---------MYB52(1)       --------->MYB52(1) <---------YAB1<---------YAB1   actttgtcttgaatcttgtctactcttcaataccgtttttcgttgaatcattcaaaaaaaaacagatctcctagtgatatgaatcaaagtttatcaataa  28700400 --------->TOE2(3) ------->GLK1(2) ----------ARR10                                                                                  <-- --------ARR11(3)                 --------->ICU4                                        --------->AHL20(2) ------->ARR11(3)               <---------ICU4                  <------MYB46(1)         --------->AHL20(1) ------>RVE1(1)      --------->TOE1(3)                          <------MYB83            <---------AHL20(2) --->YAB1            --------->YAB1  <---------YAB1           <--------P  ---------->DOF2   --------- --->AHL20(2)        --------->TOE2(3)        --------->TOE2(3)<---------DEAR3(1)      --------->AHL20(2)   aaatcttagtatacatttgcaaaccataacttcataattttgaataaacgataatgtaagacaggttggctcattagaaagcatatcaaattaattgtaa  28700500                 ---------->DOF2                <---------ICU4                <---------AHL20(2)             <--------HAHB4                --------->YAB1             --------->YAB1                <---------ICU4                      --------->SPL7            <---------YAB1              --------->YAB1                         ------->TEIL            <---------AHL20(2)          <---------ICU4                      <---------ANAC58       --------->ARR11(3)              <---------ATHB12   --------->TOE2(1)--------------->AtSPL3       <---------ARR11(3)            --------->WOX13(1)   --------->TOE1(1)<---------------AtSPL3      --------->RVE1(1)           ------->TEIL<---------ICU4    <------------CBF --------->TOE2(3) ----ZmHOX2a(1)<---------YAB1  <---------YAB1<---------YAB1   <---------YAB1<---------ANAC58 >YAB1--------->CCA1(1)   <----------DOF2 <---------YAB1 ------>ZmHOX2a(1) --------------->AtSPL8   -   ggacacaaatatctataattaatgcaggcttttatgaatcaatcatcatcattcacatcctcgtataattgtctaatttcgtacctcaaaaaaaaaacaa  28700600                                          --------->YAB1                                   --------->MYB59    *TSS--------->YAB1                           --------->ANAC58  --------->AHL20(2)         --------->TOE1(3) <---------ANAC55(2)   --------->AHL20(2)         --------->TOE2(3) --------->ANAC58 --------->AHL20(2)    <-----------GT1   <----------ID1  - ---------->GT1       <---------------AtSPL8<---------AHL20(2) <---------ZAT6       ----------->GT1--   caacgtgaaaacctaaaattagatgagttacgaaaattaggcaaaaataaataaactaaatcatagtattacaaaacaaaatgaaaacgaaaaaatgaag  28700700                                                                                      --------->DEAR3(1)                                                                                      <---------ALFIN1                                                                                      --------->AtMYB61                                                                                     --------->MYB46(3)                                                                                 <---------ALFIN1                                                                                 --------->AtMYB61                                                                                --------->O2                                                                                --------->TGA1a                                                                                --------->bZIP60(2)                                                                                --------->ANAC46                                                                                <---------At4g35610                                                                                --------->At4g35610                                                                              --------->DEAR3(1)                                                                              <---------ALFIN1                                                                           --------->ANAC46                                                                           --------->bZIP60(1)                                                                           <---------ANAC55(2)           --------->PCF5                                                  --------->ANAC58      --------->ZAT2                                                       --------->ANAC55(2)      <---------ZAT2   --------->TOE1(2)                                   --------->ANAC55(1)      <---------At4g35610                                                  --------->ANAC58 --------->ANAC58  ------->GAMYB                                           <---------bZIP60(1) --------->ANAC58 --------->MYB46(3)                                     <-----------GT1 -------->DAG2  --------->MYB52(1)                                     <-----------HVH21 -------->DOF2  ----------->RAV1(1)    ------>ZmHOX2a(1)      ------>ZmHOX2a(1)------>NtERF2     ----   aaaaagcaagctggtccccaacagacatgcgagttcgtctcctataaaactttgttaatctctccttcacacttatcacgccacctcaccacctctctcc  28700800                                                          <---------ATERF1(1)                                                        XXXXXXXXXXXXXXXXXXXXX>MIR402                                                       --------->ATERF1(1)                                                       <------NtERF2                                                     <---------DEAR3(1)                                                   <-----------HVH21                                               ------>ZmHOX2a(2)                                               ========================HOX2a_HOX2a                  -                                              <---------GLK1(1)                   --------->MYB46(3)<                                              --------->GLK1(1)                  ------>MYB46(1)    <                                             --------->ARR11(3)       --------->MYB52(1)            <                                             <---------ARR11(3)      --------->AtMYB61              -                              <---------ICU4 --------->ARR14(2)     <---------MYB55(2)              -                          --------->KAN4(1)  ------->TEIL<---------ATERF1(1)xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                 --------->LBD16             <---------AGP1         --------->MYB46(3)  --------->MYB46(3)    ------>ZmHOX2a(1)    <---------KAN4(2)   <---------ARR14(2) ------>ZmHOX2a(1)------>MYB83  ------ -->ZmHOX2a(1) ----------->RAV1(2)        <---------ATHB12--------->ATERF1(1)   --------->ANAC46   <-   tctctcctctctctcccccctggagagattattcattccctccaatggatctccgtcggaggcctcctaaaccaccggttaccaacaacaacaactccaa  28700900                                                 --------->DEAR3(1)         <---------MYB52(1)                     --------->ATERF1(1)       <---------ANAC58                         <---------LBD16       <---------ANAC58                         <------NtERF2                       ------->GAMYB   <----------DOF2                             <---------RAP2.3(1)                  ----------->HVH21  ------>ZmHOX2a(2)                            ------>NtERF2                        --------->ANAC46  --------->HSFB2a(1)                         --------->DEAR3(1)                   --------->DEAR3(2)  <---------HSFB2a(1)                         <---------DEAR3(1)                   --------->MYB46(3) <------ZmHOX2a(2)                          <-----------HVH21                     --------->At4g35610 -------->ARR11(3)                     =====================================HOX2a_HOX2a ---------ARR11(3)                     <------ZmHOX2a(2)                      --------->ANAC58 ---------ARR14(2)               ----------->HVH21                            --------->ANAC58 -----------ARR10              --------->At4g35610--------->LBD16      <---------ALFIN1 ------>TEIL                   <---------At4g35610------>NtERF2       --------->MYB46(3) -------->ARR14(2)      <---------ALFIN1--------->YAB1               ------>ZmHOX2a(1)  ------>NtERF2 --->MYB52(1)         --------->ANAC58<---------ARR11(3) ----------->RAV1(1)---------->DOF2 --------ARR14(1)     --------->ANAC58--------->ARR11(3)--------->REM1(1)--------->ANAC46       -----   cggatctttccgttcttatcagcctcgcacttccgatgacgatcatcgtcgccgggctacaacaattgctcctccaccgaaagcatccgacgcgcttcct  28701000                                                                                   ------>ZmHOX2a(2)                                                                                  --------->ARR14(1)                                                                                  <------ZmHOX2a(2)                                                                                 <---------ARR11(3)                                                                                 <---------ARR14(2)                                                                                 --------->ARR11(3)                                                                                 --------->ARR14(2)                                                                          ----------->HVH21                                                                        --------->ANAC55(2)                                                                        <---------bZIP60(1)                                                                        <---------O2                                                                        <---------TGA1a                                                                        --------->TGA1a                                                                        <---------ANAC58                                                                        <---------ANAC58                                                                        <---------bZIP60(2)                                                                        --------->O2                                                                        <---------ANAC46                                                                        --------->bZIP60(1)                                                                        ----------->GT1                                                                        <---------ANAC55(1)                                                                        <---------ANAC55(2)                                                             =============================HOX2a_HOX2a                                                             ============================HOX2a_HOX2a                                                      <-----------GT1  <------NtERF2----------->GT1                                                 --------->ANAC55(2)   <-----------------------TaNAC69(2)                 --------->ANAC58                <---------ANAC58     ------>NtERF2<-------TEIL                 --------->ANAC58                <---------ANAC58    <---------DEAR3(1)       -------       <---------ARR11(3)      --------->ANAC46  <---------ANAC55(2) --------->ALFIN1         -------       --------->ARR11(3)      --------->ANAC58  <---------ANAC46   <---------MYB52(1)        -------      <---------CCA1(2)     <---------REM1(2) <---------MYB52(1)    <-----------HVH21 <---------MYB52(1)   <---------MYB52(1) <---------MYB52(1)     <-----------HVH21--------->MYB46(3) --------->AGP1  <-------GAMYB  --------->ANAC46           --------->ANAC46 ------>ZmHOX2a(1)XXXXXXXXXXXXXXXXXXXX>MIR4240 ->ZmHOX2a(1)    ------->GAMYB --------->ANAC58<---------ANAC46<---------ALFIN1----------->ARR10    <   cttccgttatatctcacaaacgccgttttcttcacgctcttcttctccgtcgcgtattacctcctccaccggtggcgtgacaagatccgttacaatacgc  28701100                                  --------->ATHB12                                  --------->ATHB51                                  -------->ATHB1                                 --------->ICU4                                 <---------YAB1                              <------NtERF2        <-----------TGA1      ------------>ATHB5       <---------bZIP60(1)   ----------->RAV1(1)       --------->bZIP60(1)   ------>NtERF2    ================================MYC_MYB    <---------O2            --------->DEAR3(1)    <---------TGA1a         --------->ANAC46    --------->TGA1a        --------->RAP2.3(1)    --------->O2           <------NtERF2    --------->ANAC46      <---------ATERF1(1)                     ------>ZmHOX2a(1) <---------REM1(2)       ---------->CDC5                          --------->STY1(1)   =============== -->ANAC58               <---------DEAR3(1)              <<<<<<<<<GATA-1         <XXXXXXXXXXXXXXXXXXX -->ANAC58          --------->ZAT14                     <-----------GT1 <----------DOF2    --------->ZAT14 -->ANAC46    <-----------HVH21  <---------ATHB51      <---------CCA1(2)============================= -----------HVH21 --------->ANAC46<---------ICU4   <---------ANAC46<---------TOE1(2)  <----------DOF2   ctcttcacgtcgtcactatcacagaactcggcgccattattgctctcatcgcttcgtttatctatctcctagggttttttggtattgactttgttcagtc  28701200  Previous    Next  AGI:  At1g76490.1    Description:  HMG1 (3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE). Identical to 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 (HMG1) [Arabidopsis Thaliana] (GB:P14891); similar to HMG2 (3-HYDROXY-3-METHYLGLUTARYL-COA REDUCTASE 2) [Arabidopsis thaliana] (TAIR:AT2G17370.1); similar to HMG-CoA reductase [Cucumis melo] (GB:BAA36291.1); similar to hydroxymethylglutaryl-CoA reductase (NADPH) [Raphanus sativus] (GB:CAA48611.1); similar to hydroxymethylglutaryl-CoA reductase (NADPH) [Raphanus sativus] (GB:CAA48610.1); contains InterPro domain Hydroxymethylglutaryl-CoA reductase, class I/II, substrate-binding; (InterPro:IPR009029); contains InterPro domain Hydroxy Range:  from: 28700654    to: 28703687    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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