Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100    ------>MYB83  ------>MYB46(1)                        <-----------GT1 ---------MYB59                   ----------->RAV1(1) --------------->AGL1          --------->ANAC46         --------->ARR11(3) ----------------AGL3         ------>MYB46(1)           <---------ARR11(3) >MYB83                       ------>MYB83    <---------ANAC58             --------->TOE1(3)       -- >MYB46(1)                   ----------->RAV1(1)      <---------TOE2(3)    --------->TOE2(3)    ----- --MYB59                    --------->AtMYB61 <---------ANAC58            ----------------->AG  ----- ->TOE2(3)     <------ZmHOX2a(1) --------->ANAC46     <---------YAB1    <-----------GT1     ---------   taccaaatttgaaaccaggacttagagacaccaacacaacatataacttcgtgactaagatagtctcatagaaattaccttaagggtcttagtaacacga  28666200                                   ------->GAMYB                                  <------------MYB.PH3(2)                                  --------->MYB46(3)                                  <---------MYB52(2)                                ----------->RAV1(1)                               <----------ID1                             --------->ANAC58        --------->bZIP60(1)  --------->ANAC58        <---------bZIP60(1)  --------->ANAC46      <---------ZAT14       --------->DAG2 ------->WOX13(1)   ------>ZmHOX2a(2)                                               <---------ICU4 ---->ANAC58      <---------ARR14(2)             ---------->DOF2                    --------->ATHB12 ---->ANAC58      --------->ARR14(2)   <----------DOF2              ---------->DOF2--------->ICU4 >ZAT6--------->ZAT14      ---------->DOF2  <---------YAB1     ------->TEIL <---------HSFB2a(2)   gcaatctgtgaagtcacatcgatctgcaaaaaagcaacaaactttgatgaataaagcatgaaatgaagctaaaagactctcgaaaatgatttcaattcta  28666300                                <----------DOF2                       ----------->GT1                      <---------TOE1(3)               --------------->AGL15               <---------------AGL15              ----------------->AGL3           --------->GLK1(1) --------->ARR11(3)                                                   ---           <---------GLK1(1) <---------ARR11(3)        ---------->DOF2                            <--          <---------ICU4    <---------CCA1(2)      ----------->GT1   --------->MYB46(3)          <---       --------->YAB1 <---------TOE2(3)            <---------ZAT6<------ZmHOX2a(2)               ====      <---------YAB1---------->DOF2   <---------At4g35610       --------->AGP1                <------   acgagattataagaattccatataaaggttatatcttttgaactgatttcgaagtgttaaagcacagatcaacaaatgcaaattgtgggacttgattcag  28666400                                                                                                    -                                                                                                    <                                                                                                    <                                                                                                    -                                                                                                   --                                                                                                   --                                                                                                   <-                                                                                                  ---                                                                                                  ---                                                                                                  <--                                                                                                  <--                            <---------CCA1(1)                                                    ----                            <---------RVE1(1)                                                    <---                           <---------ARR11(3)                                                    <---        ------->TEIL       --------->ARR11(3)                                                    ----     <---------YAB1        <---------ARR14(2)                                                   <---- ------>ARR14(2)     <------ZmHOX2a(2)                                                          ----- -------ARR14(2)    <---------ARR14(2)                                                 ------>ZmHOX2a(2) ---ZmHOX2a(1)      --------->AGP1 --------->ALFIN1                   <----------DOF2 <------ZmHOX2a(2) ===========================HOX2a_HOX2a                        <---------SPL7        --------->ARR14(2) ---LBD16           --------->ARR14(2)                     --------->ANAC46          <---------ARR14(2)   gaacctcatgaatccaaaaccagatcgaagatattatgtggtgagagattgagagacttacacgacgttcgactttggataaaaccagatcggagaacgc  28666500  <------NtERF2  --------->ATERF1(1) <---------ATERF1(1) <-----------HVH21 ------>NtERF2 -------->O2 ---------DEAR3(1) ---------O2 -------->DEAR3(1) ------->RAP2.3(1) ------->ATERF1(1)                                    <---------WOX13(1) -----NtERF2                                         <---------ANAC58 ------>LBD16                                    --------->ANAC55(2) --->NtERF2                            --------->ARR14(2) -------RAP2.3(1)                      <---------ARR14(2)<---------ANAC58 -------ATERF1(1)       =======================HOX2a_HOX2a         <-----------HVH21 ----->ATERF1(2)        <------ZmHOX2a(1)        <---------ANAC55(2)         <---------LBD16 ------DEAR3(1)      <-----------RAV1(2)<------ZmHOX2a(2)<---------ANAC58   <-----------GT1 ------ATERF1(2)  ------>ZmHOX2a(2)    --------->AGP1<---------ANAC58   <---------GLK1(2) ----->DEAR3(1)   =============HOX2a_HOX2a   ------>NtERF2      <---------ANAC58 -----LBD16      ==============HOX2a_HOX2a  --------->ANAC46    <---------ANAC58                  <-- ---->ATERF1(1)  <------ZmHOX2a(2)--------->MYB52(1)--------->ATHB12    --------->ARR11(3)        <--   cggcgtcgcaagaagagcgatcgccaggagaagaagtaacagatcgacgacacttgattgcttcatccttgtcagatttttcggaccagtcttcgaacta  28666600                                                          ------>ZmHOX2a(2)                                                         <------ZmHOX2a(2)                                                        <---------ARR14(2)                                                        --------->ARR11(3)                                                        --------->ARR14(2)                                                        <---------AGP1                                                 --------->LBD16                                  <------------CBF      <-----------ARR10                                <---------ARR11(3)      --------->AGP1                                --------->AHL20(1)     <---------CCA1(2)          --------->ZAT18                                --------->ARR11(3)   --------->ETT(1)             <---------ZAT18                                <---------AHL20(1) <-----------HVH21         <------------CBF                       --------->TOE1(3)        --------->LBD16            <---------AHL20(1)    *TSS               --------->TOE2(3)       <---------LBD16             --------->AHL20(1) -------ANAC58       --------->ARR11(3)        --------->LBD16             --------->ARR11(3)      -- -------ANAC58       <---------ARR11(3)       <---------LBD16           <-----------TBP          <---   gcttactcactcagagaaccagagaccttaacaaaatattggctatttccccgggtcggatctagtcgaagcccatatatattgggccctaaacatgggc  28666700                                                   <---------ANAC46                                                  --------->ATHB12                                            <XXXXXXXXXXXXXXXXXXXXXMIR856                                        <------NtERF2                                        --------->At5g28300                                       <---------MYB46(3)                                      <---------ANAC46                                      <---------DEAR3(1)                                      <---------DREB2C(2)                                     <---------ABI4(1)                                     <------NtERF2<---------MYB46(3)                                   ----------->HVH21                                 <---------ZAT2   --------->MYB55(2)              <---------YAB1                                 --------->ZAT2<------------CBF              <---------At4g35610          <---------WOX13(1)     --------->At4g35610  <------MYB46(1)     --------->ZAT14         <---------GLK1(2)       ----------->RAV1(2)  <------MYB83        <---------ZAT14 ------->MYB52(1)            <------ZmHOX2a(1)--------->ATHB12      --------->TOE2(3)               - -------DOF2     <----------DOF2 <---------At4g35610<--------P    ------->TEIL  <------ZmHOX2a(1)  --   ttaagggactagattggctcttttactaataggacagctggcggtgagttattggttggattatggtgaaccttggtgcagaggatgatacagtagtcga  28666800                                                  <---------HSFB2a(2)                                            <---------ARR14(2)                  <------ZmHOX2a(1)                                            <---------ARR11(3)  --------->HSFB2a(2)                               --------->WRKY38(1)--------->HSFB2a(2)         <---------TOE2(3)                      <---------AtMYB61     --------->ARR14(2)  <---------HSFB2a(2) -------->ZAT18    <---------ARR14(2)       --------->ARR11(3)<---------HSFB2a(2)                   < ------->ALFIN1 <---------AtMYB61   *TSS   <------ZmHOX2a(1)  --------->HSFB2a(2)                  <-   agtgtgcaaaaactaggtgaggttttggttttgttgactcagtgaggattttctaggcgattttctcgagaaaatcgtttgaggaaaatggagacttcta  28666900                                                       <---------ZAT18                                                       --------->ZAT14                                                    --------->LBD16                                                   <---------ANAC46                                                --------->ARR14(2)                                                <---------ARR14(2)                                              --------->HSFB2a(1)        --------->ANAC58              ---------->DOF2  <---------ZAT14      --------->At4g35610        --------->ANAC46          --------->AtLEC2<---------LBD16           ----------->GT1        --------->ANAC58       <-------TEIL   <---------HSFB2a(1)           <---------At4g35610 ---------ANAC46           <---------YAB1     <---------HSFC1(2)          =========================== --------TOE2(3)         --------->YAB1       --------->HSFC1(2)          <-----------RAV1(2) <------   tgaggtataccagcaattccaagtctatgaagattcatgccaaagagaaggttccggtgaactcaaaaacccatttacaggtgaaaattttgttttttgt  28667000                                                        --------->HSFB2a(1)                                                        --------->HSFC1(2)                                          <---------AHL20(2) <----------DOF2      <---------ANAC46             --------->ZAT6       <---------HSFB2a(1)  <---------At4g35610          --------->DOF5.7(2)      <---------HSFC1(2)                        ---  --------->At4g35610      <------ZmHOX2a(1)    <---------ANAC58                                 ---- =====RAV       ---------->ID1<----------DOF2   <---------ANAC58                                 <--- -----RAV1(1) <-----------RAV1(1)<-----------GT1<---------ANAC46   <---------LBD16  ---------->DOF2   tgtctgcttcgtattcttgttgctatggaggactttaactctattcaatttcttgggaagtttctttactctggagtttaatgcccaaaagtctcttggg  28667100  Previous    Next  AGI:  At1g76400.1    Description:  ribophorin I family protein. similar to ribophorin I family protein [Arabidopsis thaliana] (TAIR:AT2G01720.1); similar to unknown [Populus trichocarpa] (GB:ABK93745.1); similar to Os05g0301500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055134.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66269.1); contains InterPro domain Ribophorin I; (InterPro:IPR007676) Range:  from: 28663448    to: 28666604    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g76405.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G20816.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66270.1) Range:  from: 28666836    to: 28668683    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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