Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     XX                     <------------CBF                      <---------AHL20(2)             -----------                  --------------->AGL15    <---------AHL20(2)                            --------->ANAC46            <---------YAB1           --------->YAB1  <---------ANAC46              ------->GAMYB <XXX        <------------CBF  <---------At4g35610 <------------CBF --------->ANAC46 <-----------GT1------  <----------DOF2 <---------------AGL15  ----------->TBP <-----------TBP   <---------ANAC46    <-----   atttcttttctattgttattctctattgagctactaaaatcatataaaaattgtggagtatttataggcaaactattttgtgtaacgctccaaacaatta  28630400                                                                     <---------------AtSPL8                                                      <---------ARR14(2)                                                      --------->ARR14(2)                                                      --------->GLK1(2)                                                  --------->YAB1   --------->ARR11(3)           <----     <---------HSFB2a(1)                  --------->WOX13(1)       <---------ARR11(3)           -----   <---------GLK1(2)                    ------------>CBF    --------->REM1(2)      <---------ARR11(3) XXXXXXXXXXXXXXXXXX>MIR1886.2       <------------CBF <---------GLK1(2)     <------------CBF     <---- ->CBF      <---------WOX13(1)--------->ANAC58   XXXXXXXXXXXXXXXXXXXX>MIR1888   ----------->RAV1(1) XXXXXXXXXXXXXXXXXMIR1886.3   --------->ANAC58<---------AHL20(2)   --------->ARR14(2)           ----- --->AHL20(2)                 <----------ID1 <---------AHL20(2)    <---------ARR14(2)          <----- ----AHL20(2)              --------->ANAC46  --------->AHL20(2)  ----------->ARR10--------->REM1(1)   atatggaatctttgattaatatggactacaagaagccaaattggcaattaaatcagaatctgtgaagaagatttgtacattgcaacatctgtttagagaa  28630500                                            --------->MYB52(2)       <-----------GT1             <---------ALFIN1                  <---------AHL20(2)     <-----------HVH21          <-----------GT1          --------->REM1(2) -------ARR10                   --------->YAB1           <---------ZAT14 ---->ARR14(2)                  <---------ICU4           --------->ZAT14                           <- -----ARR14(2)           ------->TEIL     <---------MYB52(1)   <------ZmHOX2a(1)               <----- ---->GLK1(2)<---------DAG2    <---------ATHB12 <-----------HVH21  <----------DOF2     <---------CCA1(2) ----GLK1(2) <----------DOF2   --------->MYB46(3)       --------->ALFIN1  <-----------GT1  <---------   tctgagttgtcacaacttttttttttgaatctaatcaccactcggctagttgtcacaagtgtagaggagctttaatttacaaacagttcttatcttttta  28630600          --------->At4g35610                                                    --------->ANAC46        <---------WRKY12                                                       --------->ANAC58        <---------WRKY38(1)                                               --------->DAG2       <<<<<<<<<<WRKY6                                                    <---------------AtSPL8       <<<<<<<<<<WRKY11     <---------CCA1(2)       ----------->GT1     ---------->DOF2      -------- --------AHL20(2)  <-----------ARR10      <---------AHL20(2)       <-----------------AGL1  <---------MYB52(2) ----AHL20(2)      <---------ARR11(3)  --------->YAB1          ----------->GT1 --------->ANAC46     - -DOF2<-----------HVH21<---------CCA1(2)  --------->AHL20(2) ---------->DOF2   --------->ANAC58   <--   tttttttgggtcaactaaacaaatcttatcttatcttatactaataaaacttaagagtaaaaacaaagtaacaaaaaaggcacacaacattcaactaatg  28630700                                                                                                 ----          --------->MYB52(1)--------->TOE2(3)                <---------DOF5.7(2)                 <---     --------->AHL20(2)   <---------ARR11(3)               --------->DOF5.7(2)*TSS ---------->DOF2    <---------ATHB12      --------->GLK1(2)         --------->ALFIN1   ----------->GT1  <---------DAG2 ->MYB52(1)         <------ZmHOX2a(2)              <---------ZAT14     --------->At4g35610       ---- ----------->CBF   --------->ARR14(2)             --------->ALFIN1    --------->GLK1(2) <----------DOF2 -------PCF2       <---------ARR14(2)    <-------TEIL     <----------DOF2   <------------CBF  <------   ggcccaataaactaatgggccgatccaaaatctaaataagaagtccataagagtgtggagctttaacgagagaagctaaattgttcaaagctttttggct  28630800                <------MYB46(1)                                         ----------->HVH21    --------                <------MYB83                                          --------->LBD16      <---------SPL7                --------->HSFB2a(1)                               --------->GLK1(2)        <---------          --------->DAG2                                          --------->ARR14(2)     --------->HSFB2a(1)         --------->DAG2                                           <---------ARR14(2)    --------->ARR14(2)        ---------->DOF2   <---------TOE1(3)                      --------->GLK1(1)      <---------ARR14(2)     <----------ID1       <---------TOE2(3)                      <---------GLK1(1)      ------->TEIL  ---------->DOF2  <-------TEIL <---------ANAC46                 <---------ARR14(2)  --------->ANAC46 ------->GT1    <---------HSFC1(2)                               --------->ARR14(2)  --------->ANAC58 ------At4g35610--------->HSFC1(2)                           <---------LBD16--------->HSFC1(2)      < ----->At4g35610<---------HSFB2a(1)   --------->DEAR3(2)  --------->ALFIN1  <---------HSFC1(2)  <---- ---At4g35610   ----------->GT1 ----------->GT1        <------NtERF2<---------LBD16  --------->ANAC58   gctaaaaaggaaaagggaaggttcaattagggtttagtgaatcgacgaagatgagtcggagtttggggattccggtgaagcttcttcacgaatcgtccgg  28630900                                                       <---------ZAT6          <---------ZAT14                              --------->ALFIN1       <---------ZAT2   <---------ANAC46                                =================HOX2a_HOX2a   <---------HSFB2a(2)   <---------ANAC58                             --------->ATHB12--------->ATHB12  --------->HSFB2a(2)   <---------ANAC58                      <------ZmHOX2a(1)     <---------YAB1 --------->At4g35610 ->SPL7   --------->REM1(2)              =================HOX2a_HOX2a     <-----------HVH21 --HVH21  --------->ZAT14       <----------DOF2<---------YAB1<------ZmHOX2a(1)<---------At4g35610 ---------CCA1(2)             --------->At4g35610  ------>ZmHOX2a(2)    <------------AtMYB77   ------ -------HVH21           <---------DEAR3(1)   --------->YAB1 ----------->GT1   --------->ZAT2   <-----   tcatatcgtgagtgtagagatgaagagcggtgagctttacagaggaagcatgatcgagtgtgaggataattggaactgtcagctcgagaacatcacctat  28631000                                                              <-----------------------TaNAC69(2)                                                             <---------At4g35610                                                             --------->ZAT2                                                  <---------ANAC46                              <----                                       <---------ANAC58      <---------ZAT2                     <----                                       <---------ANAC58      --------->At4g35610             <-------                                    <---------MYB52(1)     <------ZmHOX2a(1)       <---------TOE1(2)                                  <---------ANAC58----------------->AGL1    <---------At4g35610 <---- --->ARR14(2)                     <---------ANAC58<---------ANAC58<---------ZAT14  <---------TOE2(2) ----ARR14(2)               <---------TOE2(3)     <---------ANAC58--------->ZAT14  <---------TOE2(3)   acggccaaggtaatgtcttactaagttactagggtttcgtttcttggccattgcctatgtaggagctgtgaacagtttagcttcttaggttgtctctttc  28631100                                                                                       <---------ANAC46                                          <---------ANAC58                          <---------WOX13(1)   --------->ICU4                         <---------ANAC58                        --------->ATHB12 -----ANAC46                           --------->GLK1(2)<---------WRKY18(1)      <---------YAB1 -----ANAC58                           --------->ARR14(2)   --------->TOE1(3)    --------->ICU4 ---DOF2                               <---------ARR14(2)   --------->TOE2(3)    <---------ZAT6 -----ANAC58                <------ZmHOX2a(1)      --------->GLK1(2)       ------>ZmHOX2a(1)      ---   ttgtgatgttgagagtagttcaattttggaggagaattgagaatccttgtgaaattcttgacccttaaattgtgttcctagtagtgattgggtttagttc  28631200                                                   <-----------GT1                                         <---------ANAC58                                         <---------ANAC58                                   --------->ARR11(3) --------->ARR14(2)           <-----------GT1   ----------->GT1 <---------ARR14(2)          <---------YAB1  <-----------RAV1(1)<---------ICU4            <---------- --->ZmHOX2a(1)         ----------->GT1  <---------ANAC46       --------->YAB1   --------->AHL20(2)   ctgtatatgctagtagtagagaagaaatgttattacaggtcttgcttatgttgttactatgtagaatcatgacatgtttgcgattaaacaaattacaaga  28631300  Previous    Next  AGI:  At1g76290.1    Description:  AMP-dependent synthetase and ligase family protein. similar to AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana] (TAIR:AT1G20560.1); similar to Putative AMP-binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAN05508.1); similar to Os03g0133500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048876.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) Range:  from: 28628337    to: 28630302    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g76300.1    Description:  SMD3 (SNRNP CORE PROTEIN SMD3). similar to small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative [Arabidopsis thaliana] (TAIR:AT1G20580.1); similar to unknown [Picea sitchensis] (GB:ABK21888.1); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649); contains InterPro domain Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920) Range:  from: 28630778    to: 28632261    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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