Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                        --------->TOE2(3)                                                      --------->YAB1                                                    --------->ARR14(2)                                                    <---------ARR11(1)                                       <----------DOF2--------->TOE1(3)                               ------>ZmHOX2a(2)    <---------ARR14(2)                              <------ZmHOX2a(2)     --------->GLK1(2)                             --------->AGP1         ------->TEIL   ------>ZmHOX2a(2)                             <---------ARR11(3)    <---------ARR14(1)         --------->At4g35610                             --------->ARR11(3)    <---------CCA1(2)          <---------At4g35610 --------->ZAT14             <---------AGP1        <---------GLK1(2)     ------>ZmHOX2a(1) <---------ZAT14            <---------CCA1(2) <---------ARR14(2)   =============HOX2a_HOX2a ------DOF2            <---------MYB46(3)     --------->ARR14(2) --------->ARR11(3)   <-----------GT1   ttcttcactgttttgctgttcatagttgttagatcttatgtcttttcaaatccgaatcttaaactttgatctctcctctcatctgattaaacccatccag  28573300                                                                       <---------ANAC58                                                            --------->GLK1(2)                                                            <-----------ARR10                                              <----------DOF2          <---------ANAC46                                          <--------P     ------->GAMYB <---------ANAC58                                  ------>ZmHOX2a(2)   ----------->RAV1(1)                          <-        --------->AtMYB61       <---------ARR11(3)   --------->bZIP60(1)                     --------       --------->O2             --------->ARR11(3)   <---------bZIP60(1) <---------MYB52(1)  <-------     <---------ALFIN1  <---------MYB46(3)<---------MYB52(1)<---------GLK1(2)        <----------------   caaaatcccacctctcgagagacgattgttgttcgatcttctcggtagctttgtgacaacagaatctagggtttcgttttttgttttgtttttgtttaat  28573400      ---------->DOF2                                      <--------HAHB4    <---------YAB1                                         <---------ICU4 --------->AHL20(2)                                        --------->YAB1          <----------DOF2 <---------AHL20(2)                                        --------->ATHB12----------->RAV1(2) ---------DOF2                   <---------HSFB2a(2)      --------->ICU4   --------->ZAT2 ->AHL20(2)                      --------->HSFB2a(2)      <---------YAB1   <---------At4g35610 --AHL20(2)             <---------ICU4    --------->MYB46(3)               --------->At4g35610 --------ANAC81  <-------TEIL ------>ZmHOX2a(1)   --------->ANAC46   --------->GLK1(1)   tcttttattaaagtcttggttcataaatattcctgctagaaacaacaactgtacatcaccatcattaagagaaacccatctgcctctttctcaatctcat  28573500             --------->MYB52(2)                                                                     <           <---------MYB52(1)                                                                       <          <---------SPL7                                                                         ----       <---------At5g28300                  <---------ANAC58                ---------->DOF2   <------      <-----------GT1                       <---------ANAC58<---------CCA1(2)          <----------DOF2 <---------GLK1(2)      --------->At4g35610<---------At4g35610  <----------DOF2        <---------DAG2   aaatattctcaccgttcgcttctctcatctaaatgttctctctgtagcttctctctctctctctatctttttccatcttaaagaaaaccctttttgctcc  28573600                                                                  <----------DOF2                                                                 --------->TOE2(3)                                                                 <---------DAG2                                                              <-----------GT1      ------->TEIL                                        ------>ZmHOX2a(2)   <---------REM1(1)                                    --------->ARR11(3)   --------->ALFIN1                                     <---------ARR11(3)               ---------->DOF2  <---------------AtSPL3                                <---------AGP1         --------->LBD16 ---------TOE1(3)                          --------->ATHB12<----------DOF2    <---------ANAC58 ---------TOE2(3)                      --------->ATHB12 <---------ARR14(2)    <---------ANAC46 -->ZmHOX2a(1)                ---------->DOF2           --------->ARR14(2)    <---------ANAC58 ---------AGL15   <-----------GT1     --------->ICU4   <---------CCA1(2)     <---------LBD16 <-------   ttaaggtgtacctctcgatgttacattcgacagaaaggaaatgagtgatttgtttttggatctttaacctttttgatcatgcgggtttgacaaaagagtc  28573700               xxxxxxxxxxxxxxxxxxx>smallRNA(se3)               xxxxxxxxxxxxxxxxxxx>smallRNA(si3)               xxxxxxxxxxxxxxxx>smallRNA(i)               xxxxxxxxxxxxxxxxxxx>smallRNA(i2)               xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               xxxxxxxxxxxxxxxxxx>smallRNA(se3)               xxxxxxxxxxxxxxxxxxx>smallRNA(s2)               xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                           xxxxxxxxxx               XXXXXXXXXXXXXXXXXXX>MIR394A/B                                               xxxxxxxxxx               xxxxxxxxxxxxxxxx>smallRNA(s)                                                xxxxxxxxxx              xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                            xxxxxxxxxx              xxxxxxxxxxxxxxxx>smallRNA(s)                                    <---------ANAC58              xxxxxxxxxxxxxxxx>smallRNA(i)                     <-----------ARR10           xxxxxxxxxx              xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               <---------ARR11(1)          xxxxxxxxxx              xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               ------->TEIL   <---------ANAC46         =============================HOX2a_HOX2a              <---------ARR14(2)       --------->ZAT2         ------>ZmHOX2a(2)                                     --------->ARR14(2)      <---------AtMYB61        ==============================HOX2a_HOX2a           --------->ANAC55(2)       <------ZmHOX2a(1)        <------ZmHOX2a(2)                                   <---------ANAC55(2)       ===============       --------->AGP1   <---------ALFIN1                   ------->TEIL       --------->ANAC55(2)       <---------ARR11(3)      ------>ZmHOX2a(1)       <---------------AtSPL8 <---------ANAC58       --------->ARR11(3)  --------->AtMYB61           <---------------AtSPL3 <---------ANAC55(2)      --------->GLK1(1)<---------ETT(2)              <---------ICU4      --------->ALFIN1 --------->ALFIN1  *TSS<---------GLK1(1)<---------ZAT18              --------->ICU4     <---------ANAC46--------->ALFIN1 --GLK1(2)<----------DOF2  <---------ALFIN1  <---------ANAC46 <---------CCA1(2)       ===============   tcttacagagatctttggcattctgtccacctcctctctctatatttatgtgtaataagtgtacgtatctacggtgtgtttcgtaagaggaggtgggcat  28573800                  <---------TOE1(3)                  <---------TOE2(3)               <---------MYB52(1)            ------>ZmHOX2a(2)            xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)           <------ZmHOX2a(2)          <---------ARR11(3)          --------->ARR14(2)          --------->AGP1          --------->ARR11(3)          <---------ARR14(2)         <---------GLK1(1)                                                                     ------ xxxxxxxxx>smallRNA(si3)                                                                      <------ZmHOX2a(2) xxxxxxxxxx>smallRNA(se3)                                                                     ------- xxxxxxxxxx>smallRNA(si3)                             ---------->DOF2              --------->ZAT6 xxxxxxxxx>smallRNA(se3)                             <---------AHL20(2)<---------YAB1        -------- xxxxxxxxx>smallRNA(fl3)                  --------->ATHB12    <---------ZAT6 <---------ANAC46-------- xxxxxxxx>smallRNA(si3)  <----------DOF2 <---------YAB1   --------->ARR11(3) ----------->GT1 <------- ==================HOX2a_HOX2a           --------->ICU4 <---------YAB1--------->ARR11(3)     <------- =================HOX2a_HOX2a   <-----------GT1  <---------------AGL15<---------ARR11(3)     <-------   actgccaatagagatctgttagggtttctttgtaaaacccctcatgatttgatatataaagatagtgatcaatatcattcggtgaatactactaagatct  28573900                                                                                <---------ANAC55(2)                                                                                ----------->GT1                                     <----------DOF2                     <---------------AGL15                                    <---------DAG2                <---------ANAC46                                    --------->TOE2(3)             <---------ANAC58                                 <-----------GT1                  <---------ANAC55(2) >ZmHOX2a(2)                   --------->DOF5.7(2)                --------->ANAC55(2) -->CCA1(2)                   --------->TOE1(3)                   <---------ANAC55(1) ->ARR11(3)                   --------->TOE2(3)                   <---------ANAC58 ->AGP1                       <----------DOF2                    --------->MYB52(2)      --------->ATHB12 --AGP1                --------->HSFB2a(2)                     <---------MYB52(1)       <-------TEIL --ARR11(3)            <---------HSFB2a(2)                    <-------GAMYB--------->ATHB12 ----ARR10          --------->ARR11(3)             ----------->HVH21     --------------->AGL15      <   aagtttgaagaaaactaggtattatctcgaaactttaaccttttttgttatctgtgactgtgagcgttacttgttcttgattaagtaaaattcatttgaa  28574000                                                                 --------->ATHB12                                   ------>ZmHOX2a(2)             --------->YAB1          <---------AHL20(2)          <----------DOF2        --------->ARR11(3)             <-------TEIL             --------->AHL20(2) <---------At4g35610  <-----------HVH21                     <-------TEIL             <----------DOF2- -----------GT1 ------>ZmHOX2a(2)<---------ARR11(3)    <---------WOX13(1)<------ZmHOX2a(1)<---------AHL20(2)   ttttgctgtctcctttgatctatctgtcaaactttgatcttgatcaagactaatccgattgatacattcattgtaggaactcatcatctttttaaattgc  28574100                                                                        <---------AHL20(2)                                      <-------GAMYB                     <---------ICU4                                    <---------ANAC58                    --------->ATHB51                                   <------NtERF2                        --------->AHL20(2)                                 <---------DEAR3(1)                    --------->AHL20(2)     --------->WRKY38(1)       <---------MYB46(3)                      <---------AHL20(1)     --------->WRKY12         <---------ZAT6                     ----------->GT1     --------->WRKY45         <---------AtMYB61                 --------->DAG2     ----------->HVH21        --------->ALFIN1                ---------->DOF2   <-------GAMYB          <---------ZAT14      --------->DOF5.7(2)     <---------AHL20(2)  --------->PCF2  <---------DEAR3(1)      --------->ZAT14    <---------ANAC46<------ZmHOX2a(1)            <------ZmHOX2a(1)  <---------ANAC46 <---------GLK1(1)<---------ANAC58      --------->HSFB2a(2)       ---------->DOF2 ------>GAMYB      --------->GLK1(1)<---------ANAC46      <---------HSFB2a(2)   ---------->DOF2   aacggcgttgacaaatgtgagatttcagagtagtggtggcgtttgagacgtttacatcatctaggaaaggtaaattatttcataaagaaagaggacccat  28574200  Previous    Next  AGI:  At1g76135.1    Description:  MIR394B; miRNA Range:  from: 28573702    to: 28573822    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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