Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                             --------->TOE1(2)                                                          <---------ANAC58                                                          ------>ZmHOX2a(2)                                                          <---------ANAC58                                                         <------ZmHOX2a(2)                                                        <---------ARR14(2)                                                        --------->ARR14(2)                                                    <---------ZAT14       =============================RAV             --------->ZAT14                          <-------       ----------->RAV1(2)             <----------DOF2  --------->ARR11(3)            --------------- --------->DAG2                        <---------DAG2   <---------ARR11(3)           <--------------- --------->DOF2             --------->ZAT18        --------->AtLEC2                  <--------------- ----->YAB1                ------->GAMYB         <---------ANAC58                    ---------------- ----->TOE2(3)            --------->MYB46(3)     <---------ANAC58                <---------ANAC58   - --WRKY12               ----------->RAV1(1)   <-----------HVH21                  <---------ANAC58 <--   gataaagcgacctgaaactacttgtccaacagcactaactcctttatctgtccgtgcagatcgtgcgaaatcgtatagttttggcttgcctctaatggac  28565000                                                                  <----------DOF2      --------->At4g35610                                      --------->GLK1(2)      <---------At4g35610                                     <---------GLK1(2)      <---------ZAT2                                          --------->ARR14(2)      --------->ZAT2                                          <---------ARR14(2)   --------->SPL7                                           <------NtERF2   ---------->DOF2                                         --------->LBD16   <-------TEIL      ---------->DOF2                       ------>NtERF2                  --------->ANAC46 --ZAT18   --------->LBD16                                <---------ANAC46              --------->ANAC46 >AGL15    ------>NtERF2<---------HSFC1(2)               <---------LBD16                <---------ALFIN1 --AGL1  <---------LBD16--------->HSFC1(2)               <------NtERF2                  --------->REM1(1) --AGL2<---------ARR14(2)            --------->ANAC58   ------>NtERF2                 ------>ZmHOX2a(1) ->AGL1--------->ARR14(2)            --------->ANAC58  --------->ANAC46       <---------TOE1(2) ----- -------->LBD16--------->ANAC58   --------->ZAT2     <---------ANAC58       <---------ANAC58  ------- -------LBD16  --------->ANAC58   <---------ZAT2     <---------ANAC58       <---------ANAC58 --------   tccggtacagctccggcatgaaacaaagcttcttcgagctcgccttcaatggttttcgcgccgggattcttttgcattccttggtatcctacaccacaaa  28565100                                       --------->ANAC46                   <-------GAMYB                             --------->LBD16                             <---------MYB46(3)                             <-----------HVH21                           --------->MYB111(2)                            <---------ANAC55(2)                          --------->MYB55(2)                            <---------ANAC58                             --------->MYB52(2)                            --------->ANAC55(2)                          --------->MYB111(1)                            <---------ANAC58                            <--------P                            <---------ANAC46                          --------->MYB55(2)      <---------YAB1       <------NtERF2<-----------HVH21             <---------MYB46(3)   --------->ICU4        <---------ARR14(2)                          <---------AtMYB61 ----->DOF2              --------->ARR14(2)  <---------TOE1(2)       --------->ALFIN1 --->DOF2       <---------DAG2----------->HVH21<------ZmHOX2a(1)  <---------DEAR3(1) ->ANAC46       <----------DOF2  <---------ALFIN1             ------>ZmHOX2a(1)           <---------At4g35610   acgcgaagattatagcaactttttgaggctccgtgacacctccgtcgcaggacaagtctatttcctcatcggtggtagttgtcaacatattgagctactt  28565200                  <---------ARR14(2)                  --------->ARR14(2)                 <------ZmHOX2a(1)              --------->YAB1             <---------ATHB12           --------->WOX13(1)--------->LBD16         <---------------AGL15     --------->GLK1(1)                   --------->YAB1        <-----------------AGL1--------->LBD16                          ----------->GT1     <---------GLK1(2)       <---------LBD16                        --------->YAB1  ------>ZmHOX2a(2)         <---------LBD16                        <---------YAB1  ======================HOX2a_HOX2a<---------GLK1(1)     ------>ZmHOX2a(1) <---------At4g35610   --------->TOE1(1)               ----------->RAV1(2)         <-------TEIL     <   ctgatctgattctcaatcaggaacctcgaaccgggggaaatctctcggttttcaaactcctgagcctccattatagtaacaagagttcatcgaactctct  28565300                                    <---------ZAT18                                              <---                                    --------->LBD16                                      <----------DOF2                          <---------DOF5.7(2)                                           <---------ANAC46            ------>ZmHOX2a(1)    -------->P                                            <------NtERF2       <----------DOF2 --------->TOE1(3)                                              ------>NtERF2     <---------At4g35610--------->DOF5.7(2)                        *TSS           --------->ANAC46     --------->ZAT2    --------->TOE2(3) ---------->DOF2           <---------TOE2(3) <---------DEAR3(1) -----------GT1  ----------->RAV1(1)--------->ZAT18     --------->REM1(2)         ----------->HVH21   attttccagctttcctctgcaacaacgttaatggctaccgcacaaaagtcgaaacccttgaagacgactgaggtatgcttctctacgacggcgtttttga  28565400                                     ----------->TBP      --------->ANAC58          <----------DOF2          <-----------TBP        --------->ANAC58   <---------YAB1       --- ------GLK1(1)           --------->YAB1          <---------YAB1            --------->YAB1        ----   tatcagaccgctctttaactgggcctataattttgttttatatatgggcttattagtctcaagcccaaatgtttctcttataattcaagtcaaatttgaa  28565500                     --------->ANAC58                     --------->ANAC58                                     ---------->DOF2                    --------->ZAT18                             ----------->GT1                    <---------ZAT18                     ---------->DOF2  --------->YAB1  <---------WRKY12<---------ZAT18                  --------->ZAT18      <---------YAB1        ------- ------>DAG2      --------->At4g35610              <---------ZAT18----------->GT1   <---------YAB1 ------>DOF2      <---------At4g35610          >>>>>>>ZML2  ---------->DOF2     <---------RAP2.6(3)   aaagtcaactatatccattgagcacacatctttggaaatacagtctgttctagtgggcaaaagaaagagagaaaattatagccgttctaattgtatcaaa  28565600                                                                                <---------ARR11(3)                                                                          <---------ZAT14                                                                        --------->ZAT18                                                                        <---------ZAT18                                                                   ---------->DOF2                                                              <---------TOE1(2) <-----------ARR10                                                            <---------SPL7--------->ZAT18                                                           <---------ANAC46    <---------CCA1(2)                                                      --------->ANAC46 <---------ANAC58                                                      --------->ANAC58<---------------AtSPL8            <-----------ARR10                         --------->ANAC58--------------->AtSPL8            --------->ARR14(2)         <---------ANAC58   <------NtERF2<---------ANAC58   ------->TEIL      <---------TOE2(3) <---------ANAC58  <-----------HVH21--------->SPL7       <----- --->DOF2  <---------CCA1(2)     <---------MYB46(3) <---------ALFIN1--------->DAG2--------->TOE2(3)   gtatgaaactttcaaatctccttgaggtataggcgttgttgtcttgctgatggtacacgcgtcgtatgaaaaagcgtacacaaatcttatttcaattgaa  28565700                                  --------->ARR11(3)                         <---------ANAC58                         <---------ANAC58                         >>>>>>>>CAMTA3                         --------->ANAC55(2)                    <---------WRKY45                    <---------WRKY38(1)                   --------->WRKY18(1)                  <-----------HVH21                 ------->GAMYB    <---------ARR11(3)     ----------->GT1              <---------YAB1      <---------DAG2<---------WRKY12       <-----------RAV1(2)                     <---------ATHB51      <----------DOF2    <---------ANAC55(2)   --------->ALFIN1                    --------->ICU4   - ----TOE2(3)    --------->ZAT6    <---------GLK1(2)     >>>>>>>>>TBF1     <----------DOF2------->TEIL   gttatcgactttattctaacagtcaacgcgtgtctagatttttcttcaggtggacgaagaagaaaaaaaaaaactactttggcaaattatgaatcttcgt  28565800                                                                                                   <-                                                                                                   <-                                                                                                   --                                                                                                   <-                                                                                                   ==                                                                                                -----                                                                                                <----                                                                                            <--------                                  ----------->GT1                                         <---------At4g35610                              ---------->DOF2                             <---------At4g35610   =====                  --------->TOE2(3)       ---------->DOF2                 --------->At4g35610   <----  --------->ATHB12--------->TOE1(3) ----------->GT1  <----------DOF2--------->GLK1(2)     --------->At4g35610 -------->HSFB2a(2)      ------------------------>ANAC81           <---------GLK1(2)  <-----------GT1   ttctcgattgagttttaaaaccctaaaaattcaaaagagagaaaaaaagacatagcttttaatctctgagattctctgctcaagttgtttacagctttct  28565900  Previous    Next  AGI:  At1g76120.1    Description:  tRNA pseudouridine synthase family protein. similar to tRNA pseudouridine synthase family protein [Arabidopsis thaliana] (TAIR:AT1G20370.1); similar to hypothetical protein OsI_008242 [Oryza sativa (indica cultivar-group)] (GB:EAY87009.1); contains InterPro domain tRNA pseudouridine synthase; (InterPro:IPR001406) Range:  from: 28563564    to: 28565367    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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