Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                             --------->ANAC58                                                           --------->ANAC58                                                           --------->ANAC46                                                           <---------ALFIN1                                                     <---------ANAC58                                                     <---------ANAC46                                                 <---------ANAC46                                                 <---------ANAC58                                                 <---------ANAC58       ------>ZmHOX2a(2)                                              ----------------------->TaNAC69(2)                                            <------ZmHOX2a(2)          <---------GLK1(1)                                           --------->ARR11(3)          <------ZmHOX2a(2)                                           --------->ARR14(2)          --------->GLK1(1)            ----------->RAV1(1)            --------->ARR14(3)         --------->ARR14(2)         <---          --------->ZAT14                  <---------ARR14(3)         <---------ARR11(3)         <---          <---------ZAT14                  <---------ARR14(2)    --------->STY1(1)            <------        --------->ANAC46                   <---------ARR11(3)    <---------STY1(1)          ---------       =================RAV                --------->AGP1<---------ALFIN1                   --------- ---->TOE1(1)                           xxxxxxxxxxxxxxxx>smallRNA(s)  <---------ARR14(2)    --------- ---->TOE2(1)                      --------->MYB46(3)<---------ANAC58 --------->ARR11(3)    --------- --GT1 ----------->RAV1(2)  <-----------HVH21------>ZmHOX2a(2)--------->AtMYB61           <---------ALFIN1   gtaagtctcccctgcaccatttagaagcgctgtctcatccatcgagatcttgcttgcgtccacaccactagggatctcgtcttcgtcgaacaccacgtta  28559300                                                                                            ------>ZmHOX2a(1)                                                                                           --------->TOE2(3)                                                                                          ------>ZmHOX2a(2)                                                                                         <------ZmHOX2a(2)                                                                                        --------->ARR14(2)                                                                                        <---------ARR14(2)                                                                               --------->DEAR3(1)                                                                              --------->HSFC1(2)                                                                              --------->MYB46(3)                                                                              <---------HSFC1(2)                                           --------->MYB46(3)                 <---------HSFB2a(1)                                       <---------MYB52(1)                     --------->DEAR3(2)                                      <----------DOF2                         <------------AtMYB77                             ------>ZmHOX2a(2)                    ---------->DOF2     <---------DEAR3(2)  <---------PCF2            <------ZmHOX2a(2)                   --------->ANAC58   <-----------HVH21 --------RAV1(1)           <---------ARR14(2)            <---------At4g35610<---------ARR14(2) ------ANAC46              --------->ARR14(2)    <---------MYB52(1) --------->ANAC58 <---------TOE1(2) ---MYB52(1)               <-----------ARR10--------->DEAR3(1)  --------->ANAC58<-----------HVH21  -- >ANAC58                   --------->ARR14(3)   --------->At5g28300 --------->ANAC58<------NtERF2 --- >ANAC58                   <---------ARR11(3)   --------->LBD16--------->SPL7 --------->HSFB2a(1) <-- >bZIP60(2)                <---------ARR14(3) <------NtERF2  <---------SPL7 --------->ARR14(2)------- >ANAC46   <-------GAMYB   --------->ARR11(3)------>NtERF2 <---------------AtSPL3 <---------DEAR3(1)   tgtgggaaccctgcgttgttcttgaacacgatcttctctcctttagccaccgtgaattcagatggtacgaaagcaagggaaccgtcgtcggatcctaaaa  28559400                                            <-------GAMYB                                            <---------At4g35610                                         --------->At4g35610                                         <---------At4g35610                                      --------->HSFC1(2)                                      <---------At4g35610                                      <---------ZAT2                                                <                                      --------->At4g35610                                           -                                      --------->ZAT2                   ------>ZmHOX2a(1)     <-------                                      --------->HSFB2a(1)         --------->GLK1(1)          -------- ----->TEIL                      <------ZmHOX2a(2)                <---------GLK1(1)          -------- ------>ARR14(2)       <---------At4g35610 <-----------RAV1(1)--------->ANAC58        ---------->DOF2 -------GLK1(2)        --------->At4g35610 <---------MYB46(3) --------->ANAC58  <------ZmHOX2a(1)<--- --->DOF2        --------->GLK1(1)    <---------HSFC1(2) ----------->HVH21---------->DOF2    <-------   gaacctccatggccatcgcatttccagctaaaacgatcgaagctgctgttgccactgcgatgacaccgaaatccttcaaagaggacttcaaagcgagctt  28559500              <---------ANAC58              <---------ANAC46           <---------DEAR3(1)           --------->ALFIN1     --------->ATERF1(1)     <------NtERF2    ------>NtERF2    --------->ZAT18   --------->DEAR3(1)   <---------PCF2                                               <------NtERF2   <---------ANAC58                                            <---------RAP2.3(1)   <---------RAP2.6(2)                                         ------>NtERF2   <---------ANAC58                                           <---------RAP2.3(3)  <------NtERF2                                               <---------ATERF1(2)  --------->ATERF1(1)                                         <---------DEAR3(1)  --------->RAP2.3(1)                                         --------->ATERF1(2) <---------RAP2.3(1)     ------>ZmHOX2a(2)                   --------->SPL7 <---------DEAR4(2)    --------->ARR11(3)                   --------->MYB52(1) <---------ATERF1(1)   <---------ARR11(3)                  ----------->TGA1                  <------MYB83 <---------ORA47(2)    --------->ARR14(2)                  ----------->HVH21                 <------MYB46(1) ---------DEAR3(1)  --------->ALFIN1            <---------TOE2(2)                           <-------- -------->ALFIN1<------NtERF2       <---------MYB46(3)   --------->ZAT2           ---------->DOF2 --At4g35610 <---------LBD16       <---------ANAC46      <---------ZAT2         ----------->HVH21   - ->ZAT2  --------->ZAT2<---------AGP1           <---------TOE2(3)             --------->At4g35610   < ->At4g35610 <------NtERF2       <---------MYB46(3)      <---------At4g35610 <---------DEAR3(1)------ ------AtMYB61<---------ANAC58  <---------AtMYB61        --------->At4g35610<---------ORA47(1) ------ --ZAT2  <---------ZAT2<---------ARR14(2)       <---------TOE1(2)     <----------DOF2       ---------   aggtggcgccctggtggcggaagtggatctactgatggtggataatgtcttaggttttgagctgacggcgagctttaggccggtgaaagaagggatggtg  28559600      xxxxxxxxxxxxxxxx>smallRNA(s)   <---------ZAT2   --------->At4g35610                 <---------ANAC58   <---------At4g35610       <-----------GT1 <--------P     <---------ANAC58       <---------ANAC58 -AtMYB61       <---------ANAC58--------------->AGL15 -------->At5g28300        <----------DOF2 ---------MYB52(1)------>NtERF2 <----------DOF2                                                ------ ----->HVH21    <---------ANAC46<---------DAG2                                              --------- ----->TGA1     <---------RAP2.6(2)    <---------ANAC46       *TSS                      --------->YAB1 >ALFIN1       <---------LBD16  <---------------AGL15       ---------->DOF2            <---------YAB1   acggtagctgatgtaattgcggccattttctttactttttggggtgttttgttgatcacttgtaaagaaatgaaaacattatgggatttttgataagatt  28559700                                                                <---------ANAC55(2)                                                                <---------ANAC46                                                                <---------bZIP60(2)                                                                --------->TGA1a                                                                ==============================bZIP_DOF                                                                --------->O2                                                                --------->bZIP60(1)                                                                >>>>>>>>>>HY5                                                                <---------bZIP60(1)                                                                <---------TGA1a                                                                --------->ANAC55(2)                                                                <---------ANAC58                                                                <---------ANAC55(1)                                                                <---------O2                                                                <---------ANAC58                                                               ----------->bZIP910(1)                                     <------MYB46(1)           ----------->STF1                                     <------MYB83              ----------->bZIP911(1)                                     <---------MYB46(3)        <-----------------------TaNAC69(2)                                   <---------WOX13(1)         <---------TGA2(2)                                  <------------CBF           ----------->HVH21                                 --------->ATHB12            ----------->TGA1                                <---------YAB1             <---------bZIP60(2)                               ------->MYC3                <---------At4g35610          --------->DAG2       <-------MYC3                --------->At4g35610  ----------->GT1           <---------AtLEC2               <---------O2                    <---------TOE1(3) --->CCA1(2)            --------->At4g35610           <---------ANAC46                     <---------TOE2(3) -->ARR10---------->DOF2<---------At4g35610     <---------ARR11(3)                 <----------DOF2   tgaagagaaaataaagcgagagagttatctgcatgtgattggttaccctagatgttttgtgaggtgacgtggcattgtttgatagctttgtctaacgttg  28559800                                                                                         ------->TEIL                                                                                      --------->MYB46(3)                                                                                      <---------ATHB12                                                                                     ------>MYB83                                                                                     ------>MYB46(1)                                                                                    --------->MYB52(1)                                                                                   --------->TOE1(2)                                                                                   ------->GAMYB                                                                                   --------->TOE2(2)                                                                                  --------->MYB46(3)                                    --------->TOE2(3)                             <---------MYB52(2)                       --------->KAN4(2)                                      <---------MYB52(2)                      --------->HSFB2a(1)     <---------ANAC58              <-----------GT1                      <---------KAN4(1)       <---------ANAC58 <---------AHL20(2) <---------MYB55(2)           <------ZmHOX2a(1)      <---------YAB1               --------->AHL20(2)-------->P     -----   cataagtagataaggagactttgaacattccaagttttcattagtatttcttgttcttgtggtatttatattacttagttactaaccaacgaatcgaatg  28559900                                     ----------->RAV1(1)                                  --------->ANAC58                                  --------->ANAC58                             <-----------GT1                              ---------->DOF2               --------->TOE1(3)  --------->AtLEC2                    --------->ANAC46               <---------MYB59<-----------GT1                  --------->DAG2         --------->YAB1 <----------DOF2 --------->TOE2(3)    ---------->DOF2           --------->TOE2(3) ------>GT1    --------->TOE2(3)  --------->ANAC46          <------ZmHOX2a(1) <------ZmHOX2a(1)   ctaaattgctaatataacctaaacctcttttttaacatgcaacataaacctcttgtttaacaggaaaggtttacgaaaaaggattaatacattagaacat  28560000                ---------->DOF2            --------->AHL20(2)                                      --------->ANAC58           --------->AHL20(2)                                       --------->ANAC58               --           <---------AHL20(2)                                   --------->ANAC58           ----------     --------->TOE2(3)   <-----------------AGL1                 --------->ANAC58   --------->YAB1 ---   ctaaaattcttaaataaataaagactcttcaagtttggcaagtctagcctctcactgagcctagttaagcaagcatggacaactacaataagctagaaaa  28560100                                                                                                    -                          ---------->DOF2                                                           -                      --------->TOE2(3)                                                      <-------                      --------->YAB1                                                       <---------ANAC46              <---------ANAC58                                                             <---------ANAC58              <---------ANAC46                    --------->MYB52(1)                       <---------ANAC58    --------->MYB52(1)--------->TOE1(3)      ----------->RAV1(1)                      <---------ANAC58   --------->ARR11(1)<---------ATHB12       --------->REM1(1)                --------->TOE2(3)      - -------->DOF2<---------ANAC58             -------->P             <-----------GT1     <---------ANAC58 ->GT1  <---------------------WRI1         ------>MYB46(1)   <---------RAP2.6(3) ---------->DOF2    < ------>AHL20(2)<------NtERF2              ------>MYB83    ---------->ID1   <---------ANAC55(2) <----   taaaagaaacggcgaggcgtccaatcttaaaagagagaaacgacctacaacaaaacgacttgccgttttaactaaatcacctaaaaagccttgccgtttg  28560200  Previous    Next  AGI:  At1g76100.1    Description:  plastocyanin. Identical to Plastocyanin minor isoform, chloroplast precursor (PETE) [Arabidopsis Thaliana] (GB:P11490;GB:P93656;GB:Q52K91;GB:Q9SGS3); similar to DRT112 (DNA-damage-repair/toleration protein 112), copper ion binding / electron carrier [Arabidopsis thaliana] (TAIR:AT1G20340.1); similar to Plastocyanin, chloroplast precursor (GB:P17340); similar to Plastocyanin A, chloroplast precursor (GB:P00299); contains InterPro domain Blue (type 1) copper domain; (InterPro:IPR000923); contains InterPro domain Blue (type 1) copper subtype; (InterPro:IPR011572); contains InterPro domain Cupredoxin (InterPro:IPR008972); contains InterPro domain Range:  from: 28558881    to: 28559662    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g76110.1    Description:  high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein. similar to high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G04880.1); similar to unknown [Populus trichocarpa] (GB:ABK95398.1); contains InterPro domain High mobility group box, HMG1/HMG2; (InterPro:IPR000910); contains InterPro domain AT-rich interaction region; (InterPro:IPR001606); contains InterPro domain High mobility group box, HMG (InterPro:IPR009071) Range:  from: 28559936    to: 28562480    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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