Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                          <---------GLK1(1)                                                        --------->GLK1(1)                                                        --------->HSFB2a(1)                                                 <-----------RAV1(1)                                               <----------DOF2                                           <---------ANAC58                                           <---------ANAC58                                           <---------RAP2.6(2)                                           <---------ANAC46                                      <-----------RAV1(1)     --------->LBD16  --------------------->WRI1        <---------ANAC58   <---------GLK1(2)  <----------DOF2                   <---------ANAC58   <---------ARR14(2) ---->ARR14(2)                   --------->ARR14(2)    --------->ARR14(2) -->LBD16                   <---------ANAC46 <------NtERF2   <---------LBD16            <---------GLK1(2) ->LBD16         ------>NtERF2   <---------ARR14(2) --------->ETT(1)                  --------->ICU4 -LBD16     <------ZmHOX2a(2)    <---------GLK1(2) ---------->ID1        <------ZmHOX2a(1)      <----   ttcactttgatgagatcgacggccatttcttcgtggattcttgtggcgtctttgtcggattttccagggacatgaggagagaaatggaaagattgtcccc  28556300                                              <-----------HVH21                                       <---------ETT(2)                                       --------->ETT(2)       <---------At4g35610                                     --------->REM1(2)        --------->At4g35610                                     <-----------HVH21     <---------LBD16                       ----            --------->CCA1(2)       --------->ALFIN1   <----------DOF2                 --------->LBD16           --------->ARR11(3)      ------->MYC3  --------------->AtSPL3               <---------HSFB2a(2)           <---------ARR11(3)      <-------MYC3  --------->MYB59                      --------->HSFB2a(2)         <---------TOE1(2)         <-------MYC2  --------------->AtSPL8               <---------ANAC46         <---------TOE2(2)        <---------ANAC58   <-------TEIL                    <---------LBD16  <---------ALFIN1----------->HVH21------->MYC2 <-----------RAV1(2)         <----------DOF2      <--- -----ALFIN1<---------GLK1(1)     <---------ANAC58 <---------MYB52(1)    ------>ZmHOX2a(2)  ---------   atccccactcgtagatatcagtgacaagattgtagaacgtgtcgacgaagtcaggtactttctcggctgattcgatctcttttggtttgcggaagaaaga  28556400                                               --------->DEAR3(1)                                              --------->RAP2.3(1)                                              <---------LBD16                                              --------->ATERF1(1)                                             ------>NtERF2                                             <---------ATERF1(1)                                            --------->ATERF1(2)                                            <---------ATERF1(2)                                            --------->RAP2.3(3)                                            --------->RAP2.3(2)                                            --------->DEAR3(1)                                           --------->ERF1                                      ------                                           --------->RAP2.3(1)                    <---------ZAT2                                           --------->DEAR3(2)                     --------->ZAT2                                           --------->ATERF1(1)                    ----------->RAV1(2)                                           --------->MYB46(3)                     <---------At4g35610                                <---------ANAC46 <------NtERF2                    --------->At4g35610                               <---------LBD16<------NtERF2                      <-----------RAV1(1)                               --------->At4g35610     <------ZmHOX2a(2)    <---------ANAC58   ------     <---------MYB46(3)        <---------At4g35610   <---------GLK1(1)  <----------DOF2    --------->TOE1(1) ------------->AGL2     <---------DAG2    --------->At4g35610          <----------DOF2   --------->TOE1(2) --------------AG <----------DOF2--------->LBD16--------->LBD16        <---------DAG2  ------->TEIL ->DOF2   <---------YAB1<----------DOF2   <---------At4g35610  <-------TEIL <---------ANAC58 <------ZmHOX2a(1)   ccagtattggttatagttgtctttgactttttctgcggagattgagccgccggagagatcagaggctcgtttgccttttcgttctgctggacctaggacg  28556500                     <------NtERF2                    --------->ANAC58                    ------>NtERF2                    --------->LBD16                    --------->ANAC58                   --------->RRTF1(2)                   --------->RAP2.3(2)                   <---------DEAR3(1)                   --------->DREB2C(2)                   --------->DEAR3(1)                   <---------ATERF1(2)                   --------->RAP2.3(3)                   --------->ATERF1(2)                   --------->RRTF1(3)                  --------->RRTF1(1)                  --------->RAP2.3(1)                  --------->ATERF1(1)                  <---------LBD16                  --------->DEAR4(2)                  --------->ERF1                  --------->ORA47(2)                  <------NtERF2                 <---------ERF1                 <---------RAP2.3(1)                 <---------RAP2.6(1)                 --------->ABI4(2)                 <---------DEAR4(2)                 <---------ATERF1(1)                 <---------RRTF1(1)                 ------>NtERF2                <---------RAP2.3(2)                <---------DEAR3(1)               --------->RAP2.3(1)               <------NtERF2               --------->ATERF1(1)               <---------ABI4(2)              <---------DEAR4(2)              <---------ORA47(2)                   ------>NtERF2              <---------RRTF1(1)                 <---------ABI4(2)              <---------RAP2.3(1)                --------->MYB46(3)              <---------ATERF1(1)     <---------ZAT18             <---------DEAR3(1)       --------->ZAT14             <---------RAP2.3(3)      <---------ZAT14          --------->ZAT14            --------->ALFIN1          <---------ZAT14 --------->YAB1<---------ANAC46    ------->TEIL--------->DEAR3(1)<---------DEAR3(1) --------->DEAR3(1)                  --------->At4g35610 --->ANAC58  <---------RAP2.3(2) --------->At4g35610<------NtERF2                     --------->At4g35610 --->ANAC58  --------->ANAC46   --------->MYB52(1)--------->DEAR3(1)        ---------->DOF2 <------ZmHOX2a(1)   catatgaaccagtagacggcgccggcaatgagaccagcggtgcagtagagagccaccgagtccattttttcacagggagaaagagagaagcagaggaata  28556600                                                                                                  <--                                                                                       --------->GLK1(2)                --------->ANAC46                                           *TSS        --------->ARR11(3)                --------->ANAC58                                         --------->KAN4(1)       <---                --------->ANAC58                <---------AHL20(2)       <---------KAN4(1)       ----             --------->ZAT18       <------ZmHOX2a(1)               <---------ANAC46   <---------GLK1(2)       <---------MYB52(1)        <---------TOE1(3)     ---------->DOF2  <---------KAN4(2)   ---------   gagagagacgttaagttcacgactctgtatttgtgaaggattaatggtttttatttacaaaggtgtattgtgggaataatccagtttagaatcttgcaat  28556700                                                                                  <---------AHL20(2)                                                                              --------->AHL20(2)                                                                             <---------AHL20(2)                                                                         --------->AHL20(2)              <------ZmHOX2a(1)                                          <---------AHL20(2)       <----------DOF2                      --------->ZAT6           <---------YAB1       ------>ZmHOX2a(1)          <---------AHL20(2)                <---------AHL20(1)    --------->TOE2(3)      <---------------AGL15 --------->At5g28300                     --------->AHL20(1)    -----------      --------------->AGL15----------->GT1  --------->ANAC46        --------->AHL20(2)    <----------      =============================================================================================== <---------AHL20(2)       --------->ZAT6 <---------ZAT18            <---------AHL20(2)   <----------- -------AHL20(2)        <-----------GT1  <---------WRKY38(1)       --------->YAB1 --------->AHL20(2) ------AHL20(2)         --------->MYB52(1)<---------ALFIN1         <---------AHL20(2)    <---------ANAC55(2) ----->AHL20(2) ----------->GT1  --------->AHL20(2)                --------->AHL20(2)    ------------ --->CBF    <---------TOE2(3)    <---------AHL20(2)        ---------->DOF2   --------->AHL20(2)    <-   taaataatcctttttaggaagtaaattaacagtaattttatggtccacactactgcctatagaaagaaattatattaaaataaataaaatcacctaaaat  28556800                                      <----------DOF2                                     ------>ZmHOX2a(2)                                    <------ZmHOX2a(2)      <---------WOX13(1)            <---------RVE1(1)    --------->ATHB12               <---------ARR11(3)   <---------YAB1                  --------->ARR11(3)                  <---------AHL20(2) ---->AGL15                        --------->ARR14(2)                 <---------AHL20(2) -----AGL15                        <---------AGP1                     --------->AHL20(2) =====MADS_MADS                    <---------ARR14(2)            <----------DOF2            <-------- ------AGL3                       <---------CCA1(2)        --------->YAB1                 <--------HAHB4 ----->AGL2                --------->TOE2(3)              <---------ATHB12               <---------YAB1 --------ANAC46            <----------DOF2              --------->WOX13(1)       <---------AHL20(2)   ggtttgtgattgaaatattgttttaaaaactttagtagatcttttgactcttgttattcaatcaaaactttattaatttctgttaaaatgtattattagt  28556900                                                                           --------->AHL20(2)                                                                           <---------AHL20(1)                                                                           <---------AHL20(2)                                                                           --------->AHL20(1)                                                                          --------->AHL20(2)                                                              <---------AHL20(2)                -----                                                              --------->AHL20(2)                <----                                                             <---------AHL20(2)--------->AHL20(1)                                                             --------->AHL20(1)--------->AHL20(2)              ---------->DOF2                                --------->AHL20(2)<---------AHL20(2)            --------->AHL20(2)                         --------->YAB1     <---------ATHB12  ---------     ----------->GT1            --------->YAB1   --------->YAB1     ----------->GT1         <-------- --------->ATHB12   <----------DOF2          --------->AHL20(2)    --------->DAG2       ----------->GT1 -YAB1      <---------AHL20(2) <---------YAB1<---------AHL20(2)   ---------->DOF2    <-----------RAV1(1)   ttttgatttgtaaattaaaagtcttttaaaattttcataaatctgattttattagaatcaaaatttaataaagtcaataaattttttgtgttgtttaatt  28557000            <---------WOX13(1)                                                             --------->YAB1           >>>>>>>>>ARR1                                                          ----------->GT1         <---------YAB1                                <-----------GT1            <---------YAB1 --------->AHL20(2) --------->AHL20(2)              <---------AHL20(2)          <---------ICU4 ---->AHL20(2)    <---------TOE2(3)                --------->AHL20(2)           --------->YAB1 -----AHL20(2) <---------YAB1                  <---------AHL20(2)          <---------AHL20(2) >AHL20(2) >>>>>>>>>ARR2--------->AHL20(2)     <---------YAB1 <-----------GT1 --------->ARR11(3) -AHL20(2)--------->ATHB12        <---------ZAT6   <---------AHL20(2)      --------->AHL20(2)   aaaaaaaatgtatgattgttaatgaattaaactattgtgttattagtttataattttatacatttttcttcacaaaataaaatcatgaaaaaatcatcaa  28557100                                                                                          <----------DOF2                                                                                       <---------AHL20(2)                                                                                       <-----------GT1                                                                                   --------->AHL20(2)                                                                                   <---------AHL20(2)   --------->ARR11(3)                                  --------->YAB1             <---------AHL20(2)   <---------AHL20(1)                                 <---------YAB1              --------->AHL20(2)   --------->AHL20(1)                              <---------YAB1                 <---------AHL20(1)  --------->CCA1(2)                               <---------ARR11(3)              --------->AHL20(1) <---------ARR11(3)                         --------->YAB1                    <---------YAB1     ---- --------->ARR11(3) --------->ZAT14         <-----------GT1    <----------DOF2<---------AHL20(2)<----   atagatatattgtttgagaaacttcactaaattatagaataactaataacaagattataaaaactctttagcacttgtttataatttatttactttctat  28557200  Previous    Next  AGI:  At1g76090.1    Description:  SMT3 (S-adenosyl-methionine-sterol-C-methyltransferase 3); S-adenosylmethionine-dependent methyltransferase. Identical to 24-methylenesterol C-methyltransferase 3 (SMT3) [Arabidopsis Thaliana] (GB:Q94JS4;GB:O23655); similar to SMT2 (STEROL METHYLTRANSFERASE 2) [Arabidopsis thaliana] (TAIR:AT1G20330.1); similar to 24-sterol C-methyltransferase [Gossypium hirsutum] (GB:ABY49843.1); similar to unknown [Populus trichocarpa] (GB:ABK94689.1); similar to unknown [Populus trichocarpa] (GB:ABK93107.1); contains InterPro domain Sterol methyltransferase C-terminal (InterPro:IPR013705); contains InterPro domain Methyltransferase type 11; (InterPro:IPR01 Range:  from: 28555303    to: 28556675    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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