Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               --------                                                                                        <---------AHL20(2)                                                                                        --------->AHL20(2)                                                                                       --------->AHL20(2)                                                                                       <---------AHL20(2)                                                                                       --------->YAB1                                                                                    --------->YAB1                          <---------At4g35610                                       --------->ATHB51                       ---------->DOF2                                              <---------ICU4                    <------ZmHOX2a(2)                                               <--------HAHB4                   --------->AGP1                                                   <--------ATHB1                   <---------ARR14(2)                                               -------->HAHB4             <---------GLK1(2)                      <---------ZAT14                --------->ICU4  --------->ANAC58 --------->ARR14(2)     --------->AHL20(1)                       --------->AHL20(2)  --------->ANAC58<---------At4g35610     --------->ARR11(3)                       <---------YAB1 --------->DOF2<-------TEIL       <---------At4g35610   ----------->HVH21          <---------ATHB51 -----ZmHOX2a(1)  --------->At4g35610     <---------ARR11(3)      <----------DOF2--------->YAB1 ->YAB1      <---------ARR14(2)   --------->At4g35610   ----------->TGA1        <---------AHL20(2) >ICU4       --------->ARR14(2) <-----------RAV1(2) --------->ZAT14            --------->AHL20(2) ---   aggaaaggaactacagattcagatccaaagctgatcagatgatatatattcaactacagtgacgaatgcttttgcttcatatataataattaaaataaac  28545400                                                                                  <---------ANAC55(2)                                                                                  <---------ANAC46                                                                           <---------YAB1                                                                     --------->ICU4          <-------                                                                   <---------ICU4 <---------ANAC58                                                                   <---------AHL20(2)      --------->YAB1         --------->ANAC58                                         --------->AHL20(2)      <---------YAB1         --------->ANAC58            <---------TOE2(2)          --------->YAB1    --------->ANAC55(2) --------->YAB1                      <---------TOE1(2)         <---------AHL20(2) <---------ANAC58--- ->AHL20(2)              <---------AHL20(2) <-----------GT1--------->AHL20(2) <------------CBF  ----- ------>YAB1       --------->YAB1   ------>ZmHOX2a(1)  ----------->GT1  <---------YAB1 --------->ICU4   taataataaacacgaatgcaatgagaattaatgcattcctatgttttttcccttgagatgtataaataataaatatgatgaattgcgtaagtatgatgaa  28545500                                                     --------->ANAC58                                                     --------->ANAC46                                                     --------->ANAC58                                                    <---------LBD16                                               <---------ICU4                                               -------->HAHB4                                               <---------AHL20(2)                                              <---------ATHB51      --------->AHL20(1)                   --------->AHL20(2)      --------->AHL20(2)                   <---------AHL20(2)      <---------AHL20(2)                   <---------YAB1 --------->AHL20(2)                  --------->ARR11(3)                                <----------DOF2 --YAB1                              <---------ARR11(3)                          ---------->DOF2 ------>YAB1                <---------AHL20(2)<---------YAB1            --------->AHL20(2) -->TEIL     ------->TEIL   --------->AHL20(2)--------->ICU4            <---------AHL20(2)         <-   tcaaaaaataaaatgaaacttatggcccatttaaaatgagatgttttaattattcacgcgaacttatggcccatttaaaatgaaaaagccttttaaggcc  28545600                                           --------->ANAC58                                           --------->ANAC46                                           --------->ANAC58                                      <---                                         <-----------GT1                                        <----           <-------TEIL             <---------AHL20(2)                                          -----    --------->YAB1                 <---------AHL20(2)     --------->DAG2                    <--------   <---------YAB1                  --------->AHL20(2)  ---------->DOF2                   <----------DOF2 --------->YAB1           <----------DOF2--------->MYB52(1)                       <---------HSFB2a(2) ----------TBP <---------GLK1(2)<---------AHL20(2) ---------->DOF2           <---------AHL20(2)<-----   catttataataggttcagaaacttgaagctttgtttatttattaaacggcatcaaaagaaagagtggcaaaccctctattttatctagaggcttttgatt  28545700                                                                                               <-----                                                                                              <------                                                                                          ------>NtERF2                                                                                         --------->RAP2.6(2)                                                                                         --------->ANAC46                                                                                         ------->GAMYB                                                                    --------->At4g35610  --------->DREB2C(2)                                                                    ------>NtERF2        --------->DEAR3(1)           --------->ANAC58                                       --------->ATERF1(1)   --------->MYB46(3)           --------->ANAC58                                      <---------At4g35610  ------->GAMYB <---------AHL20(2)    <---------GLK1(2)                         --------->At4g35610  --------->AtMYB61 ------AHL20(2)        --------->ARR11(3)                        <---------ZAT2    <---------DOF5.7(2) -----AHL20(2)         <---------ARR11(3)    <---------------------WRI1------>NtERF2  <---------ALFIN1 ---->AHL20(2)       ----------->ARR10  ----------->TGA1         ----------->RAV1(2) <---------MYB55(2) -YAB1   ---------->DOF2         --------->WRKY12                --------->ZAT2  --------->DOF5.7(2) ----WOX13(1)        <---------TOE2(3)  ----------->HVH21        <---------ATERF1(1) --------->MYB46(3)   tattttttcagagaagccaaactaagattttgaagttgacgagtgacgacgatgctctcaatctcgcagctgccgagtttctcgttaaccaccgccaaat  28545800                                                                                             <-------                                                                                             --------                                                                                            <--------                                                                                            ---------                                                                                         --------->GLK1(1)                                                                                         <---------ARR14(2)                                                                                         --------->ARR14(2)                                                                                         <---------GLK1(1)                                                                                     <---------ANAC55(2)                                                                                     --------->ANAC55(2)                                                                                     --------->HSFB2a(2)                                                                                     <---------ANAC46                                                                       <-----------HVH21--------->ARR14(2)                                                                       <-----------TGA1 <---------GLK1(2)                                                                      <---------ANAC58  <---------ARR14(2)          ------>ZmHOX2a(1)                              <---------TOE2(3)           <---------HSFB2a(2)       <---------YAB1             <---------CCA1(2)      <---------TOE1(3)          <---------LBD16--    <---------MYB52(1)    <---------CCA1(2)          --------->HSFB2a(2)          --------->ARR14(2)< ------ARR10           ---------->ID1                <---------HSFB2a(2)          <---------ARR14(2)< ---CCA1(2)        ------>ZmHOX2a(1)           ------>ZmHOX2a(1)      <---------ANAC58--------->LBD16   ctcttcgttatccttcttctccttcgtcgtctctctctatcttcttctccttcttccctaaggtttctaatttcgtcagagcaagttccggaatccccaa  28545900                                                                                     ----------->GT1        --------->ZAT14                                                             --------->DAG2     ======================RAV                                                 ------>NtERF2     ----------->RAV1(2)                                                       <------NtERF2     <---------ANAC46                                                          --------->LBD16     <------NtERF2                                                            --------->DEAR3(1)   <---------DEAR3(1)                                                        <------NtERF2 --------AGL15                      ----------->GT1                          --------->ATERF1(1) ->LBD16<---------ZAT14    --------->YAB1                 --------->GLK1(2) <---------ATERF1(1) ---------AGL1            <---------YAB1         <---------SPL7             <---------RAP2.3(1) -------->AGL1        <---------GLK1(2)         --------->DEAR3(1)          ------>NtERF2 ------->MYB59----------->HVH21     <---------ZAT6       <---------GLK1(2) --------->ANAC46 ------MYB46(1)----------->RAV1(1)--------->LBD16--------->LBD16           <---------DEAR3(1)<-------TEIL ------MYB83  <---------ETT(1)  <---------LBD16<---------LBD16  <------ZmHOX2a(1) ---------->DOF2  <-   tttggtcgcctgtagtccgacagagattatcatccccagagttaataacgccggactcagaatcgaggagatagtagacgccgcgaaaggcaaaattcgt  28546000                                               <---------ZAT14                                               --------->ZAT14                               <-------GAMYB           ------>ZmHOX2a(2)      <---------At4g35610                                       <--------          --------->GLK1(1)       --------->At4g35610                                  <---------ANAC58          <---------GLK1(1)    <---------MYB52(1)        <---------ZAT14               <---------ANAC58         ------->TEIL          --------->DOF5.7(2)       <---------ARR14(2)     <---------WRKY12         <---------AGP1      <---------ANAC46--------->REM1(2)              <-----------------AGL1         <---------ARR11(3)  <---------ANAC58--------->ZAT14 --------->ATHB12 <-----------HVH21     <         --------->ARR11(3)  <---------ANAC58<---------ZAT14<---------YAB1 <---------At5g28300      <   <-------TEIL     <---------CCA1(2)  --------->ZAT2    --------->ARR14(2)<---------DOF5.7(2)      - --------YAB1    --------->HSFB2a(2)   <---------ZAT2 <---------ANAC46   --------->DOF5.7(2)<--------   cttgattcatggatctcttctcgtatcaatggcgttagccgagctcgtgtacagtcgagtatacgattgggactcgttaccgtcaatggtcgtgtcgttg  28546100       <-----------GT1                                                                           ---- ----------->GT1                                                                            <-------- -MYB46(3)                                                                            --------->ANAC58 ---------TOE2(3)                                                                     --------->ANAC58 ---------TOE1(3)               --------->DAG2    --------->YAB1                      --------->ANAC46 -------->DAG2                 ---------->DOF2   <---------ATHB12             <---------TOE1(2)  <--- -ANAC46             <---------GLK1(2)         --------->WOX13(1)             --------->LBD16    ----   ataaggttttaacttcaaaattcgattcttcaaaaaagtttcaattttgcaatcaagtttcaatctctctcactctcttccaggtttcacacaatgtcaa  28546200                                                              <-----------GT1                                                            --------->CCA1(2)                       <---------GLK1(1)                   --------->ARR14(2)                  <-----------GT1                          <---------ARR14(2)             --------->MYB52(2)                     --------->At4g35610        <---------TOE2(3)                           <---------At4g35610 ----->ARR14(2)<---------------AtSPL8         <---------At4g35610       --------->CCA1(2) ---HVH21----------->GT1                      --------->At4g35610      --------->ARR11(3) ------ARR14(2)--------------->AtSPL8      ---------->DOF2 --------->ARR11(3) ----->GLK1(2) <---------------AtSPL3 --------->TOE2(3)    <---------ARR11(3)          --------->CCA1(2)   atctggtgatgaggttaattgtacgatatcagagcttcaacctttgaaagctgaagctgaagatataccattagatatagtttatgaagataaacatgtt  28546300  Previous    Next  AGI:  At1g76040.1    Description:  CPK29 (calcium-dependent protein kinase 29); calmodulin-dependent protein kinase/ kinase. similar to CPK15 (calcium-dependent protein kinase 15), calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G21940.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61964.1); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) Range:  from: 28543724    to: 28545531    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g76050.1    Description:  pseudouridine synthase family protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO61965.1); contains InterPro domain Pseudouridine synthase, conserved site; (InterPro:IPR006224); contains InterPro domain RNA-binding S4; (InterPro:IPR002942); contains InterPro domain Pseudouridine synthase; (InterPro:IPR006145) Range:  from: 28545752    to: 28548121    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version