Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   --------->YAB1                              --------->WOX13(1)                          --------->YAB1                       --------->ARR14(2)                   --------->At4g35610                                                <---------ZAT2                  ----------->RAV1(1)                                                 <---------At4g35610        <---------YAB1 <---------ARR14(2)   --------->GLK1(1)                         --------->At4g35610     <---------YAB1<---------At4g35610 <----------ID1                      --------->YAB1   ------>ZmHOX2a(1) ---->YAB1---------->DOF2<-------TEIL  ----------->GT1                  --------->WOX13(1) <---------ANAC58 ----ATHB12      <-----------RAV1(2) --------->DAG2     --------->AHL20(2)<---------ATHB12 <---------ANAC58 ->WOX13(1)    ----------->RAV1(1) ---------->DOF2 <-------TEIL--------->TOE2(3)      --------->ZAT2   agataatatgatcaaagcaccagcagattcataaatcaaaagggagaaatcgattcatatatataccttgaaggcaatcacagttctcagcttccttacg  28456900                                                                      <---------At4g35610                                                                      <---------LBD16                                                                      <------NtERF2                                                                     ------>NtERF2                                                                    <---------ALFIN1                                                                  ------>NtERF2                                                                  --------->LBD16                                                                 --------->ANAC46                                                                 <---------ETT(1)                                                                 --------->HSFB2a(2)                                                                 <---------ATERF1(2)                                                           --------->AHL20(2)                                                           <---------AHL20(2)                                                           <---------ICU4                                                           <--------HAHB4                                                           -------->ATHB1    <---------WRKY18(1)                                                          <---------ATHB12  --------->WRKY38(1)                                            <-----------GT1--------->ATHB51<---------WOX13(1)       -                                         --------->YAB1   <---------ATHB51--------->ARR14(2)        -                                       --------->ZAT14    --------->ICU4--------->LBD16           ===                                       <---------ZAT14 ------------>ATHB5 <---------ARR14(2)      ===      --------->HSFB2a(2)    <---------ALFIN1   <----------DOF2  <---------HSFB2a(2)           ------      <---------HSFB2a(2)   <---------At4g35610<---------DAG2   <---------LBD16  ---------->DOF2  <--   aacaacatcgagaacagcatcaataagttcagcaccttcagtataatgacctttcgcccaattatttccggcaccggattgaccaaagacgaagttatca  28457000                           ------>ZmHOX2a(2)                          <------ZmHOX2a(2)              <---------SPL7      --------->ARR11(3) --------->ARR11(3)      <---------ARR14(2) --------->AGP1                                                  ----------->RAV1(1)      <-----------ARR10  <---------ARR11(3)                                             --------->AtMYB61      --------->GLK1(2)  <---------AGP1                                             --------->MYB46(3)      <---------ARR11(3) --------->ARR14(2)               <-------TEIL            --------->MYB52(1)      --------->ARR14(2) <---------ARR14(2)              ==========================HOX2a_HOX2a ----------->GT1        <---------CCA1(2)                <------ZmHOX2a(2)     --------->ANAC55(2) -------->ANAC58       ----------->ARR10                --------->ARR14(2)     <---------ANAC55(2)  - -------->ANAC58--------->SPL7                          <---------ARR14(2)     --------->ANAC58 <---- ================================HOX2a_HOX2a            --------->ARR11(3)     --------->ANAC58 ----- =================================HOX2a_HOX2a           <---------ARR11(3)  <------ZmHOX2a(1) <------ --->YAB1----------->HVH21--------->CCA1(2)   <-----------RAV1(2)        ------->PIF5  --------->MYB46(3) ----ZmHOX2a(1)<---------STY1(1)      --------->TOE2(3) --------->AGP1   <-------PIF5------->GAMYB <-   ggacggaaaatctgaccgtagggaccagatctgatactatccatagtaccaggctcgagatccatgagaacagcacgaggaacgtaacgaccaccagaag  28457100                                            --------->MYB46(3)                                          --------->ARR14(2)                                      --------->At4g35610            <---------WRKY38(1)                                    <---------DEAR3(1)               <---------WRKY12                                    ------>ZmHOX2a(2)          --------->ALFIN1                                   <------ZmHOX2a(2)        --------->MYB55(2)                                  <---------ARR11(3)       <---------LBD16                                  --------->ARR11(3)       --------->SPL7    --------->ALFIN1                                  --------->ARR14(2)     <---------SPL7  ------->GAMYB            ---     <---------YAB1        <---------ZAT2 <---------ARR14(2)<---------MYB46(3)    <-----------HVH21 -------->ATHB12           --------->At4g35610   <-------GAMYB<---------MYB52(1) --------->MYB52(2)-- -----HSFC1(2)             --------->ZAT2<------NtERF2   <-----------HVH21 <---------ANAC46       --- ---->HSFC1(2)             <---------At4g35610<---------At5g28300   <------ZmHOX2a(2)   <---------At4g35610 ---GLK1(2)          --------->TOE1(2)<---------LBD16   <---------ANAC58--------->ANAC46--------->At4g35610 ------TEIL        <-------TEIL   <---------ARR14(2)    <---------ANAC58--------->DEAR3(1)        <--   cttcattgtaataaacattgatacgttcgagctgaagatcggcggaatcaccgttgtaacgtccggtgggatcaacgccgtgttcgtcgcagataacttc  28457200                                                                                          ===========                                                                                          ===========                                                                  --------->YAB1          ===========                                                                 --------->ICU4          ============                                                               --------->YAB1            ============                                                              <---------YAB1             <------ZmHOX2a(2)                                           --------->ALFIN1   --------->ICU4            <---------ARR14(2)                                          ------->PIF5      <---------ICU4              --------->ARR14(2)             <---------ARR14(2)           <-------PIF5      --------->YAB1      --------->ARR11(3)             --------->ARR14(2)   <------NtERF2  <---------ARR14(2)             <---------ARR11(3)         <-----------------AGL1  ------>NtERF2  ===============================HOX2a_HOX2a------>ZmHOX2a(2)  --------->GLK1(2)              <------NtERF2  <------ZmHOX2a(1)<---------YAB1 --------->ARR14(3) <---------GLK1(2)               <---------RAP2.6(3)       --------->ICU4       <---------ARR14(2) ------------>AGL15             --------->RAP2.6(2)        <---------YAB1       <---------ARR14(3) ------->LBD16       <---------At5g28300 <---------ANAC46--------->YAB1         <---------GLK1(2)   < ------>HSFB2a(2)<------MYB46(1)--------->DEAR3(1)--------->GLK1(1)     ------>ZmHOX2a(2)============ -------HSFB2a(2)<------MYB83  <---------RAP2.6(2)<---------GLK1(1) <---------YAB1      --------->ARR11(3)   ccagaatttggaaccgatttggttaccgcattggccgccttggacgtggaggatttctctcatgatgatgatgatcgatgaagattttgggatctggaga  28457300                ----------->GT1              <------ZmHOX2a(1)            ------------------------>ANAC81 *TSS<------ZmHOX2a(1) =======================HOX2a_HOX2a               <------NtERF2 ====================HOX2a_HOX2a                 --------->LBD16 ===========HOX2a_HOX2a                         <---------ANAC58                           --------->ALFIN1 ====================HOX2a_HOX2a                --------->ALFIN1                         <---------ANAC46 ===========HOX2a_HOX2a--------->YAB1           <---------ANAC58                   ----------->HVH21 ---------REM1(1)<------ZmHOX2a(1)              <---------ANAC46         <---------ZAT6  <---------ANAC58 =======================HOX2a_HOX2a            <---------LBD16         ----------->GT1   <---------ANAC58   tggtgaaggagaagaaggaggagaataagaagggagagggagagagagaggcgggagagttttttttgggaagtagtgacaaaatttgacagcgtgggga  28457400                     <------------MYB.PH3(1)                    <---------At5g28300                   <-----------GT1                <----------DOF2              --------->At4g35610              <---------ZAT2             ------>NtERF2       <----------DOF2      ------>ZmHOX2a(2)               <-----------GT1     <------ZmHOX2a(2)               <-----------GT1     --------->ZAT14    --------->ARR14(2)          <---------MYB52(1)       <---------ZAT14                          <--    --------->ARR11(3)    --------->MYB52(2)         <-----------GT1     <---------AHL20(2)       <--    <---------ARR14(2)    <---------MYB46(3)  <---------MYB52(1)         --------->AHL20(2)    <-----    <---------ARR11(3)  <---------MYB52(1)------>ZmHOX2a(1)      <----------DOF2       <-----------GT1   agatgggatctttgccagctttaaccgtttgttcgttttttatcctctgttttttttactatactctctttttaaaaaaatgtttttttttaccatttga  28457500                                                                          <---------TOE2(3)                                                                       <---------YAB1              <-                                                                     --------->YAB1               ---                                                                     --------->ATHB12             ---    --------->At4g35610                  <-----------HVH21          --------->ICU4    --------->AHL20(1)    <---------At4g35610                 --------->DREB2C(2)        <---------WOX13(1) <---------AHL20(1) -------DAG2           <---------ANAC55(2)               <---------HSFB2a(2)          <---------ARR11(3) --------DOF2          --------->ANAC55(2)               --------->HSFB2a(2)          --------->ARR11(3) ------GT1         <-----------HVH21    --------->DEAR3(1)  ---------->DOF2         <---------TOE2(3)   cttttttgctgcaaacaaaaatgtcacatattgttgttagcaccgtcaaattgaaatttctacaaagtgaatgattaatgttatttaagatattgttgaa  28457600           --------->AHL20(2)                                           ------>ZmHOX2a(2)  <---------YAB1 --------AHL20(2)        <---------YAB1      <------ZmHOX2a(2)  --------->ARR11(3)       <-----------GT1 ------>AHL20(2)   <---------AHL20(2)        <---------ATHB12   <---------ARR14(2)    <----------DOF2 ------>YAB1<-----------GT1     <----------DOF2                <---------CCA1(2)   ------->TEIL   ttatatcgtccatttaactatttaagtgtgatagctttcaagtatcgatcattcattctagtttcaaatcttgatccatttgatgaatcttttactattc  28457700                        ------>MYB46(1)                        ------>MYB83                      --------->AtMYB61                      ------->GAMYB                                                <---------ANAC58                      <---------ALFIN1                                      <--------ATHB1                     <---------MYB55(2)                                     --------->YAB1                  --------->REM1(1)                                        <---------ATHB51                  --------->MYB46(3)            <---------HSFB2a(2)        <---------ATHB12              <---------STY1(2)                 --------->HSFB2a(2)    --------->AHL20(2)         <--              --------->STY1(2) --------->AHL20(2)        <---------HSFB2a(2)      <---------ANAC58      <---------ICU4 --------->MYB46(3)  <---------YAB1   --------->HSFB2a(2)      <---------ANAC46   gaatttcatcacgactagctacaaccacccttgattatatgttatgacttctgaaaacatcgagaaacaaaaattcaataatagtgcgtagaagaagacg  28457800  Previous    Next  AGI:  At1g75780.1    Description:  TUB1 (tubulin beta-1 chain); structural molecule. Identical to Tubulin beta-1 chain (TUBB1) [Arabidopsis Thaliana] (GB:P12411;GB:Q9SYQ7); similar to TUB2 (Tubulin beta-2), structural molecule [Arabidopsis thaliana] (TAIR:AT5G62690.1); similar to TUB5 (tubulin beta-5 chain) [Arabidopsis thaliana] (TAIR:AT1G20010.1); similar to TUB3 (TUBULIN BETA-3), structural molecule [Arabidopsis thaliana] (TAIR:AT5G62700.1); similar to beta tubulin [Capsicum annuum] (GB:ABP65322.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO60982.1); similar to beta-tubulin [Nicotiana attenuata] (GB:AAR37366.1); contains InterPro domain Beta tubulin, autor Range:  from: 28454802    to: 28457301    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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