Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                --------->DAG2      <-----------GT1             --------->DAG2   <---------AHL20(2)            ---------->DOF2  <---------AHL20(2)      --------------->AtSPL3        --------->ANAC58     --------->AHL20(2)      --------->ZAT6        --------->ANAC58 <---------YAB1             <---------At5g28300      ---------->DOF2    <---------AHL20(2)        <-----------GT1                        <---------ETT(2)   --------->AtLEC2    --------->YAB1         <---------AHL20(2)    --------->ICU4  <xxxxxxxxxxxxxxxx   agttcatgcaaagcaaaaggggaatttataattttataacaaaattgttttatttacagtactattagtcactatgagacatatggataatgtagacaaa  28411400                                                                                                    -                                                                          <---------AHL20(2)        <                                                                          --------->AHL20(2)       --                                                                      <---------CCA1(1)            --                                                                      <---------RVE1(1)            --                                                                     <---------ARR11(3)   --------->ATHB51                                                                     --------->ARR11(3)   <---------ICU4                                 <-----------GT1                    <------ZmHOX2a(1)    <---------YAB1             ----------->GT1   --------->YAB1                      ----------->GT1       --------->ICU4    <---------YAB1            <---------YAB1    ---------->DOF2 ---------->DOF2        --------->YAB1 xxxxxxxsmallRNA(si3)---------->DOF2--------->ZAT6        --------->AHL20(2)        --------->YAB1<--   tagattataagaaaaatgtataacaaagacttattataccactaatctcacaaagaaagattaaacaaaaggatattttaatccaagaatcataatttct  28411500          <---------PCF5 <------NtERF2 -------->LBD16               --------->DAG2                                         <----------DOF2 ---------RAP2.6(3)          ---------->DOF2                           <---------ANAC46 ------->LBD16   --------->ANAC58                                      <---------ANAC58 ------->HSFB2a(2) <---------ARR11(3)                                  <---------ANAC58        ------ ------->RAP2.6(2) --------->ARR11(3)        ----------->GT1         ------>ZmHOX2a(1)        <------ -------LBD16    --------->ANAC58   ---------->DOF2   <---------------AtSPL8    <----------DOF2<-----   gccggaatagatggaccacaagaactagacataaagccgaaagagactagtttaatcaagtacaacaagtccttcgtgttctcttttctttgattcaaat  28411600                                                                   xxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                 <---------ARR14(2)                                                                 --------->ARR14(2)                                                                 <---------ARR11(3)                                                                 <---------GLK1(2)                                                                <------ZmHOX2a(1)                                                               xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                              xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                              xxxxxxxxxxxxxxxx>smallRNA(fl3)                                                              xxxxxxxxxxxxxxx>smallRNA(si3)                                                              xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                              xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                              xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                              xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                             xxxxxxxxxxxxxxxx>smallRNA(s)                                                             xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                             xxxxxxxxxxxxxxxxx>smallRNA(se3)                                                             xxxxxxxxxxxxxxx>smallRNA(le3)                                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                             <-----------RAV1(2)                                                             xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                            xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                            xxxxxxxxxxxxxxxx>smallRNA(s)                                                       <---------ZAT2                                                       <---------At4g35610                                                       --------->ZAT2                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                   xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                  xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                  xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                  xxxxxxxxxxxxxxxx>smallRNA(s)                                                xxxxxxxxxxxxxxxx>smallRNA(i)                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                               xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                              xxxxxxxxxxxxxxxx>smallRNA(s)                                              xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                              xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                             xxxxxxxxxxxxxxx>smallRNA(fl3)                                             xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                             xxxxxxxxxxxxxxxx>smallRNA(s)                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                             xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                             xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                             xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                             xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                             xxxxxxxxxxxxxxxxx>smallRNA(si3)                                             xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                             xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                             xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                             *TSS xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                             xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                             xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                             xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                             xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                             xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                             xxxxxxxxxxxxxxxx>smallRNA(fl3)                                             xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                             xxxxxxxxxxxxxxxx>smallRNA(i)<-----------ARR10                                             xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                             xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                             xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                             xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                             xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                             xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                             xxxxxxxxxxxxxxx>smallRNA(si3)                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                             xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                             xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                             xxxxxxxxxxxxxxx>smallRNA(le3)                                             xxxxxxxxxxxxxxxxx>smallRNA(se3)                                             xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                             xxxxxxxxxxxxxxxxxxx>smallRNA(si3)              xxxxxxxxx                                             xxxxxxxxxxxxxxxx>smallRNA(se3)                --------->LBD16                                             xxxxxxxxxxxxxxxxxx>smallRNA(se3)        xxxxxxxxxxxxxxxx                     <---------At4g35610     xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(s)       <-----------HVH21                     xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxx>smallRNA(si3)    <---------ANAC55(1)                     xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   --------->LBD16    <---------ANAC55(2)                 <---------ARR14(2) xxxxxxxxxxxxxxxx>smallRNA(s)  <---------LBD16    --------->ANAC55(2)                --------->GLK1(1) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --->ARR11(3)        --------->At4g35610--------->ARR14(2)xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxx ---CCA1(2)  <---------AHL20(2)        <---------GLK1(1)xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxx>smallRNA(s) ----ARR14(2)--------->AHL20(2)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  ----------->HVH21 xxxxxxx   cttgttaagtgtcatataatttgagctaagaaatcgaacacaaatccgttgtagtctagctggtcaggatactcggctctcacccgagagacccgggttc  28411700               --------->GLK1(2)             --------->HSFC1(2)             --------->HSFB2a(1)          ------->GAMYB       --------->MYB52(1)     <------NtERF2    ------>NtERF2    --------->LBD16    --------->ANAC46   <---------ETT(1)   <---------LBD16   --------->LBD16        --------->AHL20(2)  <---------LBD16 <----------DOF2 <---------YAB1 xxxxxxx>smallRNA(fl3)    <---------AHL20(2) >smallRNA(s)<---------HSFC1(2)<---------AHL20(2)            <---------CCA1(2) xxxxxxx>smallRNA(fl3)    <---------AHL20(1)         ---------->DOF2 xxxxxxxxx>smallRNA(s)<---------AHL20(2)         <---------ETT(1)                              ------   gagtcccggcaacggagtttctttttattttattttttgataaatgggcttccgacaaagcccatattttggtttgtcttaagcccgattactgtttcat  28411800                                                                        <------NtERF2                                                                       <---------DEAR3(2)                                                                      <---------DEAR3(1)                                                                     --------->ATERF1(1)                                                                     <------NtERF2                                                                    <---------SPL7                                                                    <---------ATERF1(1)                                                                   <---------ATERF1(2)                                                                   --------->RAP2.3(3)                                                                   --------->DEAR3(1)                                                                   --------->ATERF1(2)                                                                  --------->ERF1                                                                  --------->RRTF1(1)                                                                  --------->RAP2.3(1)                                                                --------->DEAR3(1)                                                                --------->ANAC46                                                                ------->GAMYB                                                      ----------->HVH21------>NtERF2<------MYB83                                                    <---------ANAC58<-----------HVH21      <---------                                                    <---------ANAC58------>NtERF2   <------MYB46(1)                          ----------->GT1     --------->ZAT18  --------->DEAR3(2)   <---------MYB46(3)           <---------ANAC58            <---------ATHB12   --------->TOE1(3)  <---------ALFIN1    <---           <---------ANAC58            --------->AHL20(2) --------->TOE2(3) --------->MYB46(3)   <---         <-----------GT1  <----------ID1      <---------ZAT18  <------------AtMYB77<---------AtMYB61        *TSS           <---------MYB52(1)     --------->ZAT14  --------->MYB46(3) <---------MYB52(1) --->TOE2(3)<----------DOF2<------ZmHOX2a(1)  <---------ZAT14 <---------At5g28300<-------GAMYB<------   taatccgatttttgctttctcatccattaggaaaaaacccaataaatgtgcacttcgtgaccttaaccgccgtcggcaaacaccgttggttttttacttt  28411900                          --------->ARR11(3)                         <---------CCA1(2)                     --------->CCA1(2)                    <---------ARR11(3)                 <------NtERF2                                             <------MYB83                --------->LBD16                                 <-----------GT1       --------->ARR14(2)              <---------LBD16                                 <----------DOF2  <---------HSFB2a(2)              <------NtERF2                               <---------MYB52(1)   <------NtERF2              --------->ATERF1(1)                      --------->DEAR3(2)  <------MYB46(1)            <---------DEAR3(1)                        ------->TEIL       <--------P <---------HSFC1(2)            --------->ETT(2)                        <---------ZAT14     <-------GAMYB <---------ARR14(2)     <----------DOF2--------->ARR11(3)              <---------SPL7     <---------MYB46(3) ---------->ID1--------->DEAR3(1)                   --------->ZAT18    --------->MYB55(2) --GT1    <-----------HVH21                        --------->ALFIN1    --------->ATHB12             < ------ANAC58<---------RAP2.3(1)                 <---------ANAC46     <---------AtMYB61     <-------- ------ANAC58------>NtERF2<---------ARR11(3)     <---------ANAC58    <---------MYB52(1)   ------>ZmHOX2a(1) ----DOF2<-----------RAV1(1)                     <---------ANAC58<---------At5g28300--------->HSFC1(2)   cttgttcctttgtgtcgccggagatatatatcttcgacatcggtgaagaatgggtgtaccgtcgttttaccgatggttggccgagaagtatcctctttta  28412000                                                                               -------->P    <-----------ARR10                                                         ------->GAMYB   <-------GAMYB                                                        --------->TOE2(3)   <------NtERF2                                                        --------->TOE1(3)  <---------MYB46(3)                                                   --------->ZAT6         ------- <---------ANAC58                                      --------->ARR14(2)    <---------MYB111(2) <--- <---------RAP2.6(2)                                   <---------ARR14(2)    --------->MYB46(3) <---- <---------ANAC58                                 ------>ZmHOX2a(1)  ------>MYB46(1)     <---------YAB1 <---------ANAC46                             --------->GLK1(2)      ------>MYB83--------->TOE2(3) ---------LBD16         <-------GAMYB        <---------GLK1(2)     <---------MYB59    <---------ARR14(2) --DOF2        <------ZmHOX2a(1)           <---------YAB1          --------->AtMYB61  --------->ARR14(2)   gtggcggatgttatcgaggaagagcctgttgaaatcgaaggcatcaagattcctgtggatactagtaaacctaaccctaacaacctcgaatacgataatc  28412100                                              --------->CCA1(2)                                             --------->ARR14(2)                                             <---------ARR14(2)    <----------DOF2                                 <-----------HVH21    <---------ANAC58                                <----------DOF2       <---------ANAC46                               <---------ANAC58       <---------ANAC58         ----------->HVH21     <---------ANAC58    <--------P   <-----------------AGL2 -->GLK1(2)         <-----------GT1      --------->LBD16     <----------DOF2 -------DOF2      <---------KAN4(2)     --------->LBD16  --------->ARR14(2)       <---------At5g28300 -----ICU4  ------->TEIL   XXXXXXXXXXXXXXXXXXXX>MIR774B* <---------ARR14(2) <-------TEIL       <-----   tttatctcgacatgaacgggattatccatccttgctttcaccccgaagatagggtagcgtttcctttcgatttttggattcattcactgttgaatgtttt  28412200                                                                                          --------->REM1(2)                                                                                         --------->ALFIN1                                                                                        ------->MYC2                                                                                        <-------MYC2                                                                                        ------->PIF4                                                                                        ------->MYC3                                                                                        ------->PIF5                                                                                        <-------PIF4                                                                                        <-------MYC3                                                                                        ------->MYC4                                                                                     <------------OsbHLH66                                 ------>ZmHOX2a(1)                         <---------ANAC58                        <------MYB83                                       <---------ANAC58                        <------MYB46(1)                               ------>ZmHOX2a(2) <-------MYC4                       --------->MYB59--------->AHL20(2)            <---------ARR11(3)  <-------PIF5          <---------TOE2(3)     --------->TOE2(3)            --------->ICU4<---------ANAC46          <---------TOE1(3)<-------TEIL            <----------DOF2  --------->ARR11(3)------------>OsbHLH66 ----AHL20(2)   ----------------->AGL3<---------AHL20(2)----------->GT1<----------DOF2------->TEIL   atttgagacattagggttttcaaatttggttcatccttatttaaaaattggttctttgttgtaaaaatttgatctttgtgtgagtatgcacgtgtagaat  28412300  Previous    Next  AGI:  At1g75650.1    Description:  pre-tRNA. tRNA-Glu (anticodon: CTC) Range:  from: 28411645    to: 28411717    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g75660.1    Description:  XRN3 (5'-3' exoribonuclease 3); 5'-3' exoribonuclease. similar to XRN2 (EXORIBONUCLEASE 2), 5'-3' exonuclease/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT5G42540.1); similar to hypothetical protein OsJ_004151 [Oryza sativa (japonica cultivar-group)] (GB:EAZ14326.1); similar to putative 5-3 exoribonuclease [Oryza sativa (japonica cultivar-group)] (GB:BAB86550.1); similar to hypothetical protein OsI_004507 [Oryza sativa (indica cultivar-group)] (GB:EAY76660.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain Putative 5-3 exonuclease; (InterPro:IPR004859); contains InterPro domain Exonucle Range:  from: 28411808    to: 28418778    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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