Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                             <---------ANAC58                                                          ------>ZmHOX2a(2)                                                         <---------YAB1                                                        <---------ARR11(3)         <---------ANAC58                               <---------ICU4           --------->ARR11(3)         <---------ANAC58       <------ZmHOX2a(2)      <---------YAB1          <---------YAB1               <---------ANAC46      <---------ARR11(3)     --------->ARR11(3)     --------->YAB1             ------>ZmHOX2a(2)      <---------AGP1        --------->YAB1         --------->ICU4            <---------ARR11(3)     <      --------->ARR11(3)   ----------->GT1         <---------YAB1            --------->ARR11(3)   <-- --------->YAB1        --------->ARR11(3)        --------->YAB1          --------->YAB1          <--- ---------YAB1     ---------->DOF2              <---------YAB1          <---------YAB1     <--------- ------YAB1   <----------DOF2<---------ARR11(3) --------->ICU4          --------->ICU4     <---------MYB46(3) --->ID1------>ZmHOX2a(2)---------->DOF2     --------->ICU4<---------ANAC58<---------YAB1  <---------REM1(1)   ttattatagatctcgtctttgtaaagataaagataattgctcttgtcttgatgatgatgatccttgtctacttgatgatgatcttgcttgttgttgttgc  28356800                                                                                 ---------->DOF2                                                                              --------------->AGL15                                                                              <---------------AGL15                                                                             ----------------->AGL2                                                                           --------->ANAC58                                                                           --------->ANAC46                                                                           --------->ANAC58                                                                          ------->GAMYB                                                                       ------>MYB83                                                                       ------>MYB46(1)                                                                       ----------->RAV1(1)                                                                     --------->MYB46(3)                                                                     <---------MYB55(2)                                                                    --------->ANAC58                                ------>NtERF2                       --------->ANAC46                - ---------MYB46(3)  --------->CCA1(2)            <---------ZAT6     --------->ANAC58               -- -----GAMYB     ------>ZmHOX2a(1)       <----------DOF2           <---------ALFIN1               ---- --------RAV1(1)--------->HSFB2a(2)    <---------ANAC58    <---------ICU4<---------ALFIN1   --------- --RAV1(1)      <---------HSFB2a(2)    <---------ANAC58 --------->YAB1--------->ANAC46  --------->GLK1(1)   tgttgttgtctctccctcctagatagaagaaccctgccatttctttccccagtggtaatcaacatcacacacccaacacaccacaaagagaaatcaaaga  28356900                                                                                    <------NtERF2                                                                                   <---------RAP2.6(3)                                                                                   ------>NtERF2                                                                                  --------->RAP2.3(3)                                                                                  --------->RRTF1(2)                                                                                  --------->RRTF1(3)                                                                                  --------->ANAC46                                                                                  --------->DEAR3(1)                                                                                  --------->RAP2.3(2)                                                                                  --------->RAP2.6(2)                                                                                  --------->DREB2C(2)                                                <--------P                       --------->RAP2.3(1)      --------->ARR11(3)                       --------->At5g28300               --------->ERF1      <---------ARR11(3)                 <---------WOX13(1)                    --------->ANAC46  --------->At5g28300                  --------->ATHB12                        ------->GAMYB ----------->GT1                      --------->ICU4                           --------->ANAC58 ---------->GT1        <----------DOF2<---------YAB1          <---------At4g35610--------->RRTF1(1) ------->DAG2     <---------GLK1(1) --------->YAB1<---------At4g35610          --------->ANAC58 ------>DOF2      --------->GLK1(1) ---------->DOF2        <------ZmHOX2a(1)  --------->MYB46(3) ->DOF2    --------->ATHB12 <----------DOF2--------->MYB52(1) --------->At4g35610--------->ORA47(2)   aaagggtaaatcttgatttgatttccttttctttgctataaagattgacggtagatgatgaggaagcttaagaaactgcaaacgccgccatggaattagt  28357000                                             --------->HSFC1(2)                                             <---------HSFC1(2)                                        --------->ALFIN1                                    ---------->DOF2                                  ----------->HVH21              <---------MYB46(3)         ---------             <---------TOE2(3) ------>ZmHOX2a(2)         <-----------GT1                   ----------             <---------YAB1   <---------GLK1(1)       --------->ARR14(2)             ----------->GT1         <---------ANAC55(2) --------->ARR11(3)  --------->At4g35610               ----------->GT1   ctttcttcatcacttaagataactcaagtttgatctctgaaagtggaagtttgctggatttactcggtggattaagagagagagagagagaaaaaaagtt  28357100                                        --------->ANAC58                                        --------->ANAC58                                        --------->bZIP60(2)                                     <---------ZAT18                                <----------DOF2                               <---------ANAC58                               <---------ANAC58                          <----------DOF2                         ------>ZmHOX2a(2)                        <------ZmHOX2a(2)                        <---------RVE1(1)                       --------->ARR11(3)               *TSS                       --------->ARR14(3)          <---------MYB52(1)        <-----------HVH21                       <---------AGP1--------->ZAT18 --------->ARR11(3)     --------->ANAC46                       <---------ARR14(3)      --------->ZAT14         --------->ARR14(2)                       <---------ARR11(3)      <---------ZAT14         <---------ARR14(2)  --------->WOX13(1) >DAG2                 <---------ARR14(2) <---------ZAT14         <---------ANAC46     <---------ICU4 >DOF2                 --------->ARR14(2) --------->ZAT14  --------------->AGL15 <---------ANAC55(2)<   tttaagacatagagagtcccatgaagatcttttgctttgggcacttcactacagttatcttccagtttgagtgaatccccatcacataaatatcactcaa  28357200                                              <------MYB46(1)                            ------------                                              --------->ANAC55(2)               --------->YAB1               ----------->GT1                ----------->GT1 <---------AHL20(2)<---------ICU4             ---------->DOF2                  <------MYB83  --------->ANAC55(2)<---------YAB1 <---------YAB1<----------ID1    ----------->GT1----------->HVH21              <---------ATHB12 ------------CBF       ---------->DOF2        <---------ANAC55(2)              --------->ICU4 -------   actattgttgaaaaaaaaagaaaaaaaaaggaatatggataaatagataggtgacattttttaagtaattttgttagagtaatcattccattccattaat  28357300                                                                                       <---------AHL20(2)                                                                             ----------->GT1                                                              --------->AHL20(2)      <---------AHL20(2)   --------->ARR14(2)                 --------->YAB1          <---------AHL20(2)      --------->AHL20(2)   <---------ARR14(2)                <---------YAB1--------->YAB1           <---------YAB1----------- ------->TEIL                <---------TOE2(2)     <-----------GT1        <---------At4g35610 ----->AGL3--------->KAN4(2) <---------TOE1(2)  <---------ICU4<---------ICU4----------->GT1  <------- -->AHL20(2)             <---------YAB1  <---------ICU4      --------->AHL20(2)   --------->ICU4   atgtatatatgcttattctctacatttttcataggtattttcataatcccttattacaatctaattaatacatgtaagatgataaaaattaaatgacgcg  28357400                                               <---------AHL20(2)                                         <-------TEIL                                      <---------At4g35610                                 --------->ETT(2)   <---------ARR11(3)                              -     <----------DOF2             --------->ZAT18   <---------CCA1(2)   <------ZmHOX2a(1)       ------ >HVH21                   <---------AHL20(2)   --------->AHL20(2)    <---------TOE2(3)        <------ZmHOX2a(1) --ANAC46        <------ZmHOX2a(1)    --------->At4g35610      <---------MYB46(3)      <---------AtLEC2   ttgttttctttactatgtaggaagtcatttttttgtccacagatgcaaattatatatctaatcgatggttttaggattcaaaacaatatgcatgaaggag  28357500                     ------>MYB83                     ------>MYB46(1)                    --------->MYB52(1)                   --------->TOE1(2)                   --------->TOE2(2)                  --------->DEAR3(2)                  <---------MYB52(2)                  --------->MYB46(3)               <---------SPL7              --------->DEAR3(1)     -------->HAHB4     --------->AHL20(1)              <---------ICU4     <---------AHL20(1)             --------->ICU4     <---------AHL20(2)           --------->YAB1                                               ------     --------->AHL20(2)          <---------AHL20(2)                                            ------     --------->ARR11(3)          --------->AHL20(2)                                      ---------->DOF2     <---------ARR11(3)         --------->AHL20(2)                                     --------->AHL20(2)    --------->AHL20(2)   ------->TEIL--------->YAB1                     --------->AHL20(2)     <----- -------->AHL20(2)<---------MYB55(2)<---------ATHB51         --------->ARR11(3)        <---------AHL20(2) ----->GT1   --------->ANAC46   <---------AHL20(2)           <---------ARR11(3) ----------->GT1<-----   tataaaatatattacgccgaaccaacgtatcgaatttaataatgactcgttttcgttttagtagattttaaaaatttaagatgtgttaattaaaagaaat  28357600 --->HSFB2a(1)                                         <----------DOF2       <---------ICU4     <---- --->HSFC1(2)                                          <---------DAG2 <---------ZAT6   --------->YAB1 ----HSFC1(2)                            ----------->GT1      <---------At4g35610 <---------YAB1<---- ----HSFB2a(1)     <----------DOF2----------->GT1  <---------ZAT18    ----------->GT1  ----------->GT1   ttcttagcgaaaatgttgtttcttttaaaactaaactagaaaatagaaaatagctcgctttttaagctcatagtgttaatttttatcaatggtgaataga  28357700  Previous    Next  AGI:  At1g75520.1    Description:  SRS5 (SHI-RELATED SEQUENCE 5). similar to SRS7 (SHI-RELATED SEQUENCE 7) [Arabidopsis thaliana] (TAIR:AT1G19790.1); similar to SRS7 (SHI-RELATED SEQUENCE 7) [Arabidopsis thaliana] (TAIR:AT1G19790.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO61060.1); contains InterPro domain Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511); contains InterPro domain Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510); contains InterPro domain Protein of unknown function DUF702 (InterPro:IPR007818) Range:  from: 28355223    to: 28357156    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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