Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               --------                                                                                             --------                                                                                             --------                                                <---------ZAT6                         ------>NtERF2                                        <-------MYC3                                  --------->LBD16                                        ------->MYC3                                  <---------ETT(1)        <---------ALFIN1             ------->GAMYB                                    ----------->HVH21   <---------KAN4(1)                 <---------ALFIN1                    <----------DOF2     --------   --------->KAN4(1) <------MYB83  -------->P ----------->GT1      <-------TEIL  <---------At4g35610  <---------KAN4(2)  <------MYB46(1)--------->MYB46(3)            --------->CCA1(2)   --------->ANAC46 --------->YAB1  --------->ZAT2   <-----------GT1            ---------->DOF2     --------->ZAT2   --- ------>YAB1     <---------ZAT2   --------->WOX13(1)     <---------AtLEC2<---------DAG2----------->RAV1(1)   gaagaataatccacccctaagctaggttttgaaaatcaaccacatgggtagtgaaattggcatgaaagattcaaactttttcaagctcccgacacaagta  28352000                                                                                             --------           --------->ANAC58                  --------->GLK1(2)                            <---------LBD16 ->ANAC55(1)             --------->MYB52(1)--------->MYB46(3)                         <-----------GT1 ->ANAC46  --------->ANAC46             --------->YAB1                             ------>MYB46(1) ->ANAC58  --------->ANAC58          --------->WOX13(1)                  --------->AHL20(2)<---------LBD16 ->ANAC58--------->ZAT6---------->DOF2 <---------ATHB12   --------->At4g35610      ------>MYB83 -------->GT1    --------->AHL20(2)<---------ATHB12       <---------At4g35610    <---------MYB59-----   atgtaatttcaacactcaatttcataaaaacggactaatcaatcaacaatctagggtttgagctaaaactcaaaatttaagaaccaaattacctcggggg  28352100                                                           <---------LBD16                                                           --------->LBD16                                                       --------->ARR14(2)                                             <---------ANAC46                                           <-----------HVH21                                          =====================================bZIP_DOF  --------->At4g35610                                          <---------O2 <---------ARR14(2)             <---------At4g35610                 <------ZmHOX2a(2)        --------->TGA1a <---------TOE1(1)           --------->At4g35610         --------->LBD16                  --------->O2 --------->GLK1(2)              <---------HSFC1(2) <---------ARR14(2)                    ----------------->AGL1                         <---------ZAT2 --------->GLK1(2)                <---------ICU4<---------------------WRI1            --------->ZAT2 <-----------ARR10           <---------KAN4(2) <------NtERF2    --------->ANAC58      --------->HSFB2a(1) --------->ARR14(2)      --------->HSFB2a(2) <---------LBD16    --------->ANAC58      --------->HSFC1(2) ->LBD16<---------ANAC46 <---------HSFB2a(2) --------->ETT(1) <------ZmHOX2a(1)<----------ID1 ------>GT1    <------ZmHOX2a(1)--------->GLK1(2)  <------ZmHOX2a(1)---------->DOF2  ------->TEIL   gagaatcgtcccgtagaggatcaacttcgcgaacaatctttgccatgtcgggaggagaatccgaggaagcaaaagaagaagacgacgaagctgctatctt  28352200                                                                              <-----------ARR10                                                                              <---------ARR14(3)                                                                              <---------ARR11(3)                                                                              <---------ARR14(2)              --------->REM1(1)      ------->GAMYB                            --------->ARR14(2)           <---------ETT(2)        -------->P                                 --------->ARR14(3)           --------->ETT(2)       --------->WOX13(1)                          --------->ARR11(3)          ---------->ARF1        --------->MYB46(3)  <----------DOF2         --------->RVE1(1)      <---------ANAC58  <---------ZAT18------>MYB46(1)                      ------->TEIL      <---------ANAC58 <------ZmHOX2a(1)       --------->WOX13(1)     --------->ICU4 <---------ANAC58     --------->ANAC46 ------>MYB83  <---------DAG2   --------->GLK1(2)  <---------MYB52(1) <---------ANAC58  --------->MYB52(1)--------->AtMYB61   <-----------GT1 <---------YAB1<---------ICU4   gtgccatgccttgtctacaactacaggacacttcatcaaccaaatcgatctatcacttttctctatatcgagattatgaatatcttccatcgttactctc  28352300                                         <-----------GT1         ------>ZmHOX2a(2)                             ---------->ID1                    <---------ARR11(3)               *TSS                    <----------DOF2    <----------DOF2         --------->ARR11(3)          --------->TOE1(2)             --------->WOX13(1)  <---------TOE1(2)   <---------At4g35610   <---------ANAC58--------->TOE2(2)       ---------->DOF2     <-----------RAV1(1)       --------->At4g35610   <---------ANAC58--------->TOE2(3)   tctcttctccaaagtcaatcttctttctcttgtcgcagtttctttacttctcttgagctctgtctgatcttccgatttcgttttgacttaaaacctaagt  28352400                                                                            <---------O2                                                                            ===============MYC_MYB                                                                            <---------TGA1a                                                                           ------>MYB83                                                        <---------MYB52(1) ------>MYB46(1)                                                      ----------->GT1    <---------MYB59                                                      --------->ANAC46   --------->DREB2C(2)                  ----------->GT1                ----------->HVH21      --------->DEAR3(2)                ----------->GT1                  <---------ETT(1)    --------->WRKY38(1)               <---------DEAR3(1)           ----------->HVH21        --------->WRKY12               <---------AtMYB61          <---------At4g35610     <---------ANAC58           <---------At4g35610 --------->GLK1(1)--------->DEAR3(2)<---------ANAC46 ----------->GT1        ---------->DOF2       <---------GLK1(1) --------->MYB46(3)<---------ANAC58 <-------GAMYB<----     <----------DOF2     ---------->DOF2  --------->At4g35610    <-------TEIL     ----------->GT1   cttcttactttgaagcggaggtgaaaaaaaaggaatcccatctcatatgacccgacccgttactatatacgtggaccgacttgggcgttaaaacaaatag  28352500                                 <---------AHL20(2)                               --------->TOE2(3)                               <----------DOF2                               ==============================================================MADS_MADS                     --------->GLK1(2)                                       ----------->RAV1(1)             <---------YAB1    --------------->AGL15                         <---------------AGL15          <---------AHL20(2)   <---------------AGL15--------->ANAC46         --------------->AGL15 --------->ANAC58    --------->ARR14(2)      <---------MYB46(3)        <-----------RAV1(1) --------->ANAC58    <---------ARR14(2)    <---------MYB52(1)        <---------ANAC58 ------ID1<---------YAB1   <---------GLK1(2) --------->MYB52(2)      <---------ANAC58        <-------   gccaaggcccatattattgtaagaatccagtttctttaatgggccgtttgttattcgcaaaaacatatatttcttgttgccacattttgaattgttttat  28352600                    <---------WOX13(1)                    <---------YAB1                                                    ------->TEIL                  --------->ATHB12                                              <------ZmHOX2a(2)                 <---------YAB1                                          >>>>>>>>>>ABI3               --------->bZIP60(1)                                       <<<<<<<<<<FUS3         <----               <---------bZIP60(1)   ------->TEIL             <-------MYC3     --------->ARR11(3)  ---------->DOF2--------->ICU4--------->ARR14(2)             ------->MYC3<---------AtLEC2     <----- --AHL20(2) ----------->HVH21  <---------ARR14(2)   <-------TEIL         >>>>>>>>>>FUS3    <---------   tttctaaagtatagatgacatgattaataggggtatatgtatgtccatactgcatacataaacacatgtagagcatgcatggatcatggatgtatggtgc  28352700                         <------ZmHOX2a(2)                                  <---------ZAT14                 --------->AHL20(2)                                         ---------->DOF2                 <---------AHL20(2)                                  ---------->DOF2            <----            <---------AHL20(2)                                   <---------YAB1               <------ -----AtLEC2--------->AHL20(2)         <---------ANAC46        <---------At4g35610           <------- --TEIL     <---------AHL20(1)        --------->ATHB12  <---------YAB1   ----------->GT1     -------- --RAV1(1) --------->AHL20(2)  <-------TEIL   <----------DOF2  --------->At4g35610       <---------TOE2(3)   atgtataaatgtattaaatttaaatggatcacatacatattgtttggacttttggaccactattgtgctgataaagagtaaagagaacaccaaggttgtt  28352800      ---------->DOF2  <---------------AGL15                                          <---------AHL20(2) <-----------------AGL1                                          --------->AHL20(2) <-----------------AG                                        --------->AHL20(2) ----------------->AGL1                            <---------WRKY12 -----MYB46(3)                           <---------------------WRI1 -GAMYB  ----------->GT1              <---------WOX13(1)    <---------ATHB12   <---------ARR11(3) --MYB46(3)                          --------->ARR14(2)------->GAMYB           --------->ARR11(3) ->MYB111(2)              <------ZmHOX2a(1)      <------ZmHOX2a(1)         ---------->DOF2   gttgacaaaaaaggaaacaaaataccgaggatggaaatggattggcgattaggacaacgacaatgaattaattcttagaaagaacttaactaaatccatg  28352900  Previous    Next  AGI:  At1g75510.1    Description:  transcription initiation factor IIF beta subunit (TFIIF-beta) family protein. similar to ATP binding / RNA polymerase II transcription factor/ catalytic [Arabidopsis thaliana] (TAIR:AT3G52270.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61065.1); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain Transcription Factor IIF, Rap30/Rap74, interaction; (InterPro:IPR011039); contains InterPro domain Transcription initiation factor IIF, beta subunit; (InterPro:IPR003196); contains InterPro domain Transcription initiation factor IIF, beta subunit, subgroup (InterPro:IPR016640) Range:  from: 28350716    to: 28352396    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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