Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                    <---------AHL20(2)                                                                 <---------AHL20(2)                                                           ----------->GT1                                                           <------MYB46(1)                                                          --------->MYB46(2)                                              --------->ZAT6     --------->AHL20(2)      ---------->DOF2                       <-----------GT1<------MYB83                --------->AHL20(2) --->ARR14(2)                     ------>ZmHOX2a(1)   <---------TOE2(3)            ----------->GT1 --->ARR11(3)     --------->ARR14(2)  ------>ZmHOX2a(1)   --------->MYB59 --------->ANAC58         -- ----ARR14(2)     <---------ARR14(2) --------->TOE2(3)<---------YAB1      --------->ANAC58         ==   ctggatgagaaagttgagagtaatcgctggtctctccttcctaaattaacacaattaagtttggtaattaaataactagcaactagagaaaaaatagggt  28343500                 ----------->GT1        --------->ANAC58               <---------ANAC46         --------->ANAC46               ----------->GT1          --------->ANAC58             <---------ZAT14      <----------DOF2             --------->ZAT14      <---------------AGL15     ---------->DOF2              --------------->AGL15    --------->AHL20(2)            <---------DAG2                   --------->ANAC58  <---------YAB1 --------------->AGL3       ----------->GT1                        --------->ANAC58<-----------GT1 =================================================MADS_MADS <------ZmHOX2a(1)--------->ICU4   tttcaaataaagaagtgaagtgaaaatagaaggttacttttcaaggaagtaagcgaagggaaggagaagaagcaaggcgatgatgttacgataaacaggg  28343600                                                     --------->LBD16                                                   <---------LBD16                                            <-------PIF5                                            ------->PIF5                 --------->TGA2(2)                                            ------->MYC2                --------->TOE2(3)                                            <-------MYC2                <-----------TGA1                                            ------->MYC4                <-----------HVH21                                            ------->MYC3               --------->ANAC58                                           <---------TGA1a             --------->bZIP60(2)                                           --------->TGA1a             <---------O2                                           --------->PIF3(3)           --------->TGA1a                                           <---------ANAC46  ====================MYC_MYB                                           ==========================MYC_MYB                                           <---------PIF3(3) <---------MYB59                                           <---------O2      ------->GAMYB                              <---------ZAT2<-------MYC3  --------->ARR14(2)                              --------->ZAT2<-------MYC4  <---------ARR14(2)                  <---------TOE2(2)        --------->O2   --------->MYB52(1)--------->At4g35610  ----                  <---------TOE1(2)      <---------ALFIN1----------->HVH21  <---------At4g35610  <---        --------->At4g35610   <---------At4g35610--------->ARR14(2)    --------->ANAC58    <---------At4g35610        <---------At4g35610   --------->At4g35610<---------ARR14(2)    --------->O2        --------->At4g35610   aagacgagtttgctgattcccatgttaagagcagctcgagacaccacgtggaatccggcgtaaccgaattgcaacgtcagcatcgctatgtgaagctgaa  28343700                      --------->GLK1(1)                      <---------GLK1(1)                      <------ZmHOX2a(2)                     --------->ARR14(2)             --------->LBD16        --------->GLK1(1)        <---------GLK1(1)       <-----------ARR10       <---------ARR14(2)       --------->ARR14(2)                   <<<<<<<<<<<<<<<<<LFY     --------->LBD16 --------->ARR11(3)     ------>NtERF2    <---------HSFB2a(2)     <---------GLK1(2)         ------>ZmHOX2a(2)    --------->HSFB2a(2)------>ZmHOX2a(2)    --------->LBD16                         --------->DAG2    --------->ANAC46 <---------ARR11(3)    --------->ANAC46            <---------WRKY38(1)   <---------LBD16   --------->ARR14(3)    --------->ANAC58            <---------WRKY12   <---------ANAC46 ----->HSFC1(2)      <---------ARR14(2)    --------->ANAC58           <------ZmHOX2a(2)   --------->ALFIN1 ------HSFC1(2)     <------ZmHOX2a(1)     <---------LBD16      --------->MYB46(3) ---------->DOF2   gcttctccggaactccccataaggatctccgattatcggtgttatccgccattggatcgagcttaacaatcgatcaacgaaggaaaaaggctgtgtgtgt  28343800                                                                                                 <---                                                                                                 ----                                             --------->AHL20(2)                             ---------                     <------ZmHOX2a(1)     --------->CCA1(2)                                <--------                   <---------TOE2(3)      --------->ARR11(3)                              --------->PCF2                <---------WOX13(1)        <---------ARR11(3)                             <---------PCF2              --------->ATHB12       <---------ANAC58                                 <---------ANAC46             <---------YAB1          <---------ANAC46                              <----------DOF2           <-------GAMYB             <---------ANAC58                             <---------ANAC58      <---------ANAC58              <---------LBD16     <-------TEIL              <---------ANAC58      <---------ANAC58        <---------ZAT14<---------AHL20(2)--------->WOX13(1) <---------ANAC46      <---------ANAC46 ---------->DOF2--------->LBD16  <--------P             <----------DOF2   -----   gtgtgtttgtgtgtgttgattgaggaaaagagtgaagttgcggagatataaatataggtagatagcaatctcattcccctctttgcttgtgggaaccacc  28343900                                                                          <-----------TBP                                                                          --------->AHL20(2)                                                                          <---------AHL20(2)                                                                        <-----------TBP                                                                        <---------AHL20(2)                                                                        --------->AHL20(2)                                                                      <-----------TBP                                                                      <---------AHL20(2)                                                                      --------->AHL20(2)                                                                    --------->AHL20(2)                                                                    <---------AHL20(2)                                                                  --------->AHL20(2)                                                                  <---------AHL20(2)                                       ------------>CBF           <-----------TBP                                      <-----------GT1           <---------AHL20(2)                                      --------->YAB1            <-----------TBP                                     <---------YAB1             --------->AHL20(2)                                   --------->YAB1             <-----------TBP                                   <---------ICU4             <---------AHL20(2)        <-----------------AGL1    --------->ICU4              --------->AHL20(2)  *TSS--------->GLK1(1)           <---------YAB1            --------->AHL20(2) ------ZAT14                    ------>MYB46(1)             ----------->TBP <---------AHL20(2) ----->ZAT14                  <---------MYB59              <---------AHL20(1) >MYB46(3)                    --------->TOE2(3)            --------->AHL20(1)          --------->MYB59 -MYB55(2)                 <-----------GT1 ----------->GT1--------->AHL20(2)----------->TBP   <------ ---->AtMYB61   ----------->GT1 ------>MYB83       <------------CBF <-----------TBP    <---------TOE2(3)   atactgagatttctaatatggtatctattaaacctaattataacaatgtgaaatattgaaatatatatatatatatatatatatggatttaggtatatta  28344000                                          ----------->GT1                                     ------>MYB83                                  --------->ANAC58                                  --------->ANAC58                                --------->ANAC58                                --------->ANAC58                             --------->ZAT14                   --------->YAB1 ===================================================================                   --------->ATHB12  ------>MYB46(1)                             <---------YAB1                  <---------ATHB12----------------->AGL3                       <---------ICU4                  <---------YAB1--------->ANAC46                               --------->YAB1        ---------->ID1   <---------------AtSPL8                <------NtERF2  --------->ICU4      <-----------RAV1(1)--------------->AtSPL8 <----------DOF2<---------At4g35610 ---AHL20(2)    ------>ZmHOX2a(1) --------->ANAC46             --------->At4g35610  <---------YAB1   atgagtttttgttgtttcctatcatttgatgtacacaccaaatattgttactttggtctactggcagcattcactccttgattatgatttttgaattggg  28344100                 --------->AHL20(2)                 <---------YAB1                 <---------AHL20(2)                                                           <------             --------->AHL20(2)                                                               <------             <---------AHL20(2)                                                           <-------TEIL            <---------AHL20(2)                                                         <---------ANAC58        <---------AHL20(2)                                                             <---------ANAC46       --------->AHL20(2)  <---------------AGL15       <---------AHL20(2)              <---------ANAC58       <---------AHL20(2)  --------------->AGL15       --------->YAB1                <-----------GT1  <---------AHL20(2)      <-----------------AGL2       --------->AHL20(2)         <---------ICU4 <---------AHL20(1)       <-----------------AG     <---------YAB1                 <--------HAHB4 --------->AHL20(1)       <-----------------AGL1<---------YAB1              <-----------GT1  -------- <---------AHL20(2)     <-----------GT1       --------->YAB1<---------TOE2(3) <---------YAB1 <------- --------->AHL20(2) <---------YAB1----------->GT1--------->YAB1    <---------DAG2<---------YAB1   <-- ==========================================MADS_MADS--------->YAB1 <----------DOF2--------->YAB1<----   aaataaaattttaatttatattattatttctctattgggttatatcaagtatgataataatataggttactttttgttttactattattacgttcattat  28344200                               --------->AHL20(1)                               <---------AHL20(1)                               --------->AHL20(2)                               <---------ARR11(3)                      ----------->RAV1(1)                     --------->ANAC46                                                   --------->TOE2(2)                   --------->ANAC58    --------->LBD16                                  <---------MYB59 ---ICU4           --------->ANAC58   <---------LBD16                                   --------->TOE2(3) --HAHB4      --------->ZAT18  --------->ARR11(3)                                    <-----------GT1 ->ICU4       <---------ZAT18  <---------AHL20(2)           ----------->GT1  --------->YAB1 --YAB1  ---------->DOF2 --------->TOE2(3)                ---------->DOF2   <---------YAB1 -------AHL20(2)   --------->ANAC46  <---------LBD16  <----------ID1       <---------TOE2(2)      <-- -----YAB1--------->ANAC46    --------->AHL20(2)   ---------->DOF2    --------->MYB52(1)--------->TOE1(2)   tattttgtttacaaagcacacacacaacataaatatatttcagggaaaatcgcaaaaggagaaagaaaaactcaacgtatgatagttttacctaagaaat  28344300                                             <---------ANAC46                                             <---------ANAC58                 <---------AHL20(2)          <---------ANAC58                 --------->AHL20(2)      --------->GLK1(1)             <---------RVE1(1)          <---------ARR14(2)            <---------ARR11(3)          <---------GLK1(2)                                          --     <----------DOF2                    --------->ARR14(2)                     --------->YAB1     --- -------YAB1--------->ARR11(3)      <---------LBD16    ---------->DOF2        <---------YAB1     <---   atgatttcttttgagatattaaaataaacgattgtgttttcggattttcttggaaaaaaaagactcttgaattgaaaactatcatacactattctactta  28344400  Previous    Next  AGI:  At1g75500.1    Description:  nodulin MtN21 family protein. similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT3G53210.1); similar to unknown [Populus trichocarpa] (GB:ABK93351.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) Range:  from: 28341446    to: 28343902    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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