Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                           --------->YAB1                                                          --------->CCA1(2)    <---------AHL20(2)                                 --------->AHL20(2)      <---------ARR11(3) --------->ATHB51                              --------->YAB1         ---------->DOF2     --------->TOE2(3)                             <---------YAB1    --------->DAG2           <---------YAB1          ----- ------>ZmHOX2a(2) --------->MYB46(3)         ---------->DOF2     <---------YAB1      <---------GLK1(1) --YAB1         <---------WRKY38(1)    ----------->GT1   --------->ARR11(3) --------->AHL20(2) ------   tgatcgtttattatgtagtcaacaaatagttttcataaaatgagaaaaaaaagcagaaagatatagttttcattaccataatttatagaattctgtaacc  28316700                                        ----------->RAV1(1)                                       --------->ANAC58                                       --------->ANAC58                                  <------MYB46(1)        <---------ZAT6     --------->LBD16                                               <------MYB83     <---------HSFB2a(2)   --------->HSFB2a(2)                                  <---------ANAC58     --------->HSFB2a(2)   <---------HSFB2a(2)                    <----------DOF2       --------->MYB46(2) ---->TOE2(3)              ------>ZmHOX2a(1)           <---------AHL20(2)       <---------ANAC58 --->MYB46(3)   <-------TEIL      --------->MYB59   ----------->GT1     <----------DOF2 --------->MYB59   aaaatttctagacttaagtccataacttcctcgaattaggcacaacacaagaacaagttaatttagttctttttctttccatgcttgagtttggtatttt  28316800                                                                                                    <                                                                                                    -               <-------GAMYB                                        <---------AHL20(2)          -----               --------->At4g35610                    <---------MYB46(3)                    ---------             <---------ANAC46                <---------TOE2(3)      --------->AHL20(2)    --------->AHL20(2)             --------->ETT(1)              <---------AHL20(2)    <---------ARR11(3)    --------->ARR11(3)           <-----------HVH21           --------->AHL20(2)   --------------->AGL15      <---------GLK1(2)          <-----------RAV1(1)          <---------AHL20(2)<-----------GT1 <---------ICU4<---------ARR11(3)      <----------DOF2            --------->TOE1(3)  <-------GAMYB--------->AHL20(1)  ----------->ARR10   <---------ARR11(3)            --------->TOE2(3) <-----------RAV1(1)  <---------ATHB12<---------RVE1(1)   --------->ARR11(3)  --------->MYB52(1) <---------AHL20(2)<---------MYB59     <---------YAB1  <----   tcgactatctttctgtcggatgaactatcgaaaaaccttatttttttaatgttctgttgttaccgaatatataaatcattttgtgataagatttttatat  28316900                             <--------HAHB4                             <---------ICU4                            <---------YAB1                         <-------TEIL                    <--------P                  --------->MYB52(2)                  <------MYB83                  --------->MYB55(2)                 <---------AtMYB61                 --------->MYB111(1)                 <---------MYB46(3)                <--------P--------->YAB1              --------->MYB55(2)           --------->MYB52(2)--------->ATHB51                      <---------ARR11(3)         <--------P <---------WOX13(1)                             --------->AHL20(1) --------->AHL20(2)<-------GAMYB                                   --------->ARR11(3) <---------AHL20(2)<---------ANAC58                                <---------AHL20(1)        -------- --------->AHL20(1)<---------ANAC58                          --------->ANAC58             <---------LBD16 ---------AHL20(2)<------MYB46(1)                            --------->ANAC58             =========== -------->AHL20(2)<---------MYB46(3)                  --------->YAB1                  <-----------GT1 ---->AHL20(2)--------->ATHB12                        ----------->GT1    ---------->DOF2  ----------- >AHL20(2)<---------AtMYB61 --------->ICU4      --------->YAB1 --------->ANAC46     --------->YAB1  < -----AHL20(2)<---------MYB46(3)         --------->RAP2.6(2) --------->ANAC46   <---------YAB1<------   aaataatttgggttagtggttggttgattcataattagttaagccgaaaatgaaaatggtaacacacaaaatattgaaagttacaattatacccctggac  28317000                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                                                                 ----                                                                                 <----------ID1  ----                                                                        --------->ARR11(3)       ----                                                                        <---------ARR14(2)       <---                                                                        --------->ARR14(2)       <---        <---------At4g35610                                             <---------ARR11(3)       ----        --------->At4g35610                                            <---------CCA1(2)        -----       ----------->RAV1(1)                                       <-----------HVH21              <----    --------->ANAC58                                         --------->MYB52(1)--------->DAG2   <----    --------->ANAC58                                      --------->ANAC58    =======================    --------->ANAC46                                      --------->ANAC58    ---------->DOF2   -----   <---------LBD16                     <<<<<<<GRF7  ---------->DOF2<---------MYB46(3)           ----- --->HVH21                    --------->At4g35610 --------->ANAC58 <---------ANAC46             ----- ==================RAV        <---------At4g35610 --------->ANAC58 <---------ANAC58             ===== >RAV1(2)                ------>ZmHOX2a(1)        --------->ANAC46 <---------ANAC58          <------- -----------HVH21--------->ANAC58    ----------->HVH21    --------->ANAC46------>ZmHOX2a(2)  -------- ---WRKY18(1)    --------->ANAC58  ----------->RAV1(2) --------->TOE1(2)<---------AGP1       <-------   cgtttcacgcagcaaaatccagcaatcctggctgcttccctgacacaaatacacgaaagtacgaaacggtcgtggatctaaaaagcacaaaacagtacac  28317100       <---------ICU4       ------>ZmHOX2a(2)     <---------ARR11(3)     --------->ARR11(3) <---------ANAC46 <---------ANAC58 <---------ANAC58 ----PIF5 --->PIF5 ----MYC4 --->MYC2 ---->ABF1 --->MYC3 ----MYC3 ----MYC2                                                   <-----------ARR10 --->MYC4                                                   <---------AGP1 ---->ANAC55(2)                                             --------->ARR11(3) -----O2                                                    <---------ARR11(3) -----TGA1a                                          <--------HAHB4 =====bZIP_DOF                                       <---------ICU4 ---->TGA1a                          --------->YAB1 <---------YAB1                     --------->GLK1(2) ---->ANAC46                    ------------>CBF*TSS--------->ICU4                     <---------ARR14(2) ---->O2                       ------>MYB46(1) --------->At4g35610                ----------->RAV1(1) ==================bZIP_DOF  --------->AtMYB61 ----------->RAV1(2)        ---------->DOF2 --ZAT14   <---------At5g28300 ------>MYB83    <---------At4g35610  --------->WOX13(1) --------->ARR14(2) ->ZAT14  <-----------GT1 <---------ALFIN1 <---------ARR11(3) ------>ZmHOX2a(2)--------->PCF2------->TEIL --ZAT18<----------DOF2<-----------GT1     --------->ARR11(3)<------ZmHOX2a(2) <---------TCP15(1)   gtggcatgatctttaccgtccctagataccaccttccaatctgaatatcatctgatcattaagatctcatcaatctgaaaggtcccacaaatctgaaccc  28317200                                                            <---------WOX13(1)                                                           >>>>>>>>>ARR2                     --------->HSFC1(2)                   --------->ATHB12                     <---------HSFC1(2)                  <---------YAB1                     <---------HSFB2a(1)             --------->ARR14(2)                ------>ZmHOX2a(1)                    --------->ARR11(3)                             <          --------->HSFC1(2)                         <---------ARR14(2)                    <---------          --------->HSFB2a(1)               <---------HSFB2a(2)                         <---------ARR14(2)        <---------GLK1(2)              <<<<<<<<<TBF1<------ZmHOX2a(1)             <-----------HVH21 -    <-----------GT1  --------->HSFB2a(1)    --------->HSFB2a(2)     <----------DOF2     --------->ARR14(2)   ttcgattttcgattcttcctcgagccttccttccttccttcttcttctccaagaggattttgattgtctcctttactctctccatgtcaagttctggtgc  28317300         <---------HSFC1(2)         <---------HSFB2a(1)         --------->HSFB2a(1)         --------->HSFC1(2)    --------->ANAC55(2)    --------->ANAC58    --------->ANAC55(1)    --------->ANAC46    --------->ANAC58                      <----------DOF2 -----------HVH21                      <-----------GT1            <-----------GT1 --RAV1(1)<---------GLK1(2)           <---------AHL20(2)  <---------TOE2(3)                  ------->TEIL ----->ZmHOX2a(1)                 <---------AHL20(2)      <---------TOE1(3)           <---------ANAC46   tccttcacgcaaggttctctctctcacttgctctgtttatttaactttggttttggaattagggtttttgactatattttgggaaactgtgtgtgtatgt  28317400                                                                 ------>MYB46(1)                                                                 ------>MYB83                                                                 -------->P                                                                 --------->MYB52(1)                                                                --------->MYB55(1)                                                               <---------MYB111(2)                                                               <---------MYB55(2)                                                               <---------MYB111(1)                                                               <---------MYB46(2)                                                               --------->MYB46(3)                                                          <<<<<<<<<GATA-1                                                          <<<<<<<<<GATA-3                                                    <---------At4g35610                                                    --------->At4g35610                                      <---------ANAC58    <<<<<<<<<GATA-2                                      <---------ANAC58    <<<<<<<<<GATA-4             ------>ZmHOX2a(2)      <---------ARR11(3)   ------->TEIL            <------ZmHOX2a(2)       <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <---------ARR11(3)       --------->ARR11(3)   --------->ARR14(2)              --------->YAB1           --------->ARR11(3)   ---------->DOF2   <-----------RAV1(2)           ---------->DOF2    --   agactctgagtaagatcgcgactaatcgtcttcagaaagagcttgtggaatggcagatgaatccacctactggtttcaaacacaaagtcactgataatct  28317500                             <---------YAB1                  <------MYB83                  <------MYB46(1)                                   <---------bZIP60(1)           <---------YAB1<---------DAG2             --------->CCA1(2)                           -----        --------->ICU4   <----------DOF2           --------->ARR11(3)                       ---------  ----------->GT1<---------TOE2(3)         --------->YAB1           ----------->GT1      --------->At4g35610 -------->DOF2   --------->MYB59         --------->GLK1(2)          --------->bZIP60(1)  <---------At4g35610   ccaaaggtaaattatgaattaggtttactttattcttgttgagaatcatataagatttagaaattttgtgatgtcaaattcaatggtttgcagatggata  28317600  Previous    Next  AGI:  At1g75440.1    Description:  UBC16 (UBIQUITIN-CONJUGATING ENZYME 16); ubiquitin-protein ligase. similar to UBC18 (UBIQUITIN-CONJUGATING ENZYME 18), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G42990.1); similar to ubiquitin conjugating enzyme [Gossypium hirsutum] (GB:ABR14728.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608); contains InterPro domain Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135) Range:  from: 28317148    to: 28318783    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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