Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                      <---------ALFIN1                                  --------->LBD16                                  ------>NtERF2                                        <-----------RAV1(2)                                 --------->ANAC58                                   ------>ZmHOX2a(2)                                 --------->ANAC58                                 --------->ARR14(3)                                 --------->ANAC46                                 <---------ARR14(3)                                <---------LBD16                                   <---------AGP1                           <------NtERF2                                          --------->ARR11(3)                           --------->ATERF1(1)                                    <---------ARR11(3)       <---------GLK1(2)   --------->At4g35610                                    <---------ARR14(2)     --------->ANAC46      <---------At4g35610                                    --------->ARR14(2)     --------->ANAC58     <---------ATERF1(1)                                    <---------CCA1(2)     --------->ANAC58     <---------RAP2.3(1)                                   <-------TEIL -------->ZAT14           ------>NtERF2                                         ----------->ARR10 ---------ZAT18          <---------RAP2.3(2)                                   <--------P ---------ZAT14          <---------RAP2.3(3)                                <---------TOE2(3)   <---- ->ANAC58                <---------DEAR3(1)       ------>NtERF2             --------->MYB59  -------- ->ANAC58                <---------RAP2.6(2)     --------->ANAC46        <----------DOF2    <-------TEIL ->ANAC46        <---------MYB52(1) --------->DEAR3(1)            <---------TOE2(3)<------ZmHOX2a(2)   agttcacaagaaactctccgttcttaggcggcttcccgccatcccaagtcgacgcgatgaataaaactagggtttctttaggtagatcttcaggttcgta  28227000                                                                                                    <                                                                                                    -                                                                                                    -                                                                                                    <                                                                          --------------->AtSPL8    <                                                                         <---------At4g35610        <                                                                     <----------DOF2                <                                          <---------CCA1(2)      <---------TOE2(3)        --------->At4g35610                                      <---------ANAC46       --------->At4g35610--------------->AGL15        ------>ZmHOX2a(2)            <-------TEIL            <---------At4g35610<---------------AGL15      <---------ARR14(2)          --------->At4g35610     --------->WRKY12--------------->AtSPL3    -      --------->ARR14(2)          <---------At4g35610     --------->WRKY38(1)  <-----------------AGL1 <---------ANAC46                --------->MYB52(2)      <----------CDC5 --------->At4g35610      --- -----TOE1(2)                    ----------->ARR10       <---------MYB52(1)    ----------------->AGL1 ->MYB52(2)                    <---------MYB52(1) ---------->DOF2<---------TOE1(3)        <---------At4g35610   gctatgtggatcgacgatatcaaatgctatgtcgttagatgcgcatagctcgtgaagccgttgagctaaggctttagctgtaccagtttgggagatgaag  28227100                <---------ANAC58           --------->At4g35610           <---------ZAT2           --------->ZAT2           <---------At4g35610          <-----------RAV1(1)        ------>ZmHOX2a(1)        <---------At4g35610   <----------DOF2  =============HOX2a_HOX2a  ------>ZmHOX2a(2) ==============HOX2a_HOX2a <------ZmHOX2a(2) ---------ARR14(3)                                                                                 -- -------->ARR14(3)                                                                    --------->At5g28300 -------->ARR11(3)                                                      <---------RVE1(1)         <-- ---------AGP1------>NtERF2                                            --------->ARR11(3)  --------->DAG2 ---------ARR11(3)                                                     <---------ARR11(3) ---------->DOF2 -----------ARR10<----------DOF2                                --------->ANAC46     ----------->GT1 ---------ARR14(2)                                              --------->ANAC58   <-------TEIL  <--- -------->ARR14(2)          <---------ZAT6                      --------->ANAC58 <---------ARR14(2)<- -------->ARR10 <---------ANAC58       <-----------GT1 <---------At4g35610    <---------TOE2(3) <----   aagatctttcctctgctggctttcaatgtagagctagggtttaacgagaggtttttcagatgtttcaagcgacgatatttatggatacagtaaaaagtcg  28227200                                                                                               <-----                                                                                              ------>NtERF2                                                                                             <-------                                                                                            ---------                                                                                            <------NtERF2                                                                                           ------>NtERF2                                                                                           <---------DEAR4(2)                                                                                           <---------ORA47(2)                                                                                           <---------ATERF1(1)                                                                                           <---------RAP2.3(1)                                                                                           <---------ERF1                                                                                           <---------DEAR3(2)                 ---------->DOF2                                                           <---------RRTF1(1)               --------->ANAC58                                                            <---------RAP2.6(1)               <---------MYB52(2)                                                         --------->DEAR3(1)               --------->ANAC58                                                           <---------RRTF1(2)          --------->ANAC46                                                                <---------RAP2.3(3)          --------->ANAC55(2)                 <---------ANAC46                            <---------RRTF1(3)          --------->ANAC58               <------ZmHOX2a(1)                                <---------RAP2.3(2)          <---------ANAC55(2)       --------->ANAC46                                      <---------DEAR3(1)        --------->MYB52(1)          --------->ANAC58                                     <---------ABI4(1) ------->At4g35610 --------->ANAC58 --------->ANAC58     <---------ANAC55(2)             --------->ATERF1(1) -------DEAR3(1)------->GAMYB   --------->ANAC58        --------->RAP2.6(3)             <---------RAP2.3(1) ---NtERF2--------->ANAC58      --------->ANAC58       --------->MYB52(1)             --------->SPL7 --------At4g35610 --------->ANAC58<---------LBD16    ----------->TGA1               --------->MYB52(1) -------HVH21--------->MYB52(1) --------->ANAC46      ----------->HVH21       --------->WRKY18(1)   <   tcgctgagagtaacgcaacgaaagctagtcgaacacgcacggaggaagtcgtagacatgacggaagacttgaactagatagtcaagcttacggcggcgcg  28227300        --------->ANAC58        --------->ANAC46                                                         <---------HSFB2a(2)      --------->ANAC46                                                 --------->ALFIN1 -NtERF2--------->ANAC58                                              *TSS       --------->HSFB2a(2) --ANAC46                             --------->CCA1(2)             --------->DAG2 >ATERF1(1)                 --------->CCA1(2)                      ---------->DOF2                <-- ---------ZAT6        <-----------HVH21                           <---------ATHB12          <--------   tagtgtttacgcgaaactatgaactgtgagagatggagagaaatggggaagaagacgggaagagagcaataaagtgtgaggttttagaactgggctttat  28227400                                                                            --------->ZAT18                                                               ------------>CBF                                                              --------->ANAC58                                                              --------->ANAC58                                                              --------->ANAC55(1)                                                              --------->ANAC46       <----------DOF2                                                        --------->MYB46(3)  <---------ZAT18                            <------------CBF       --------->ANAC46         <---------ZAT14    ======                         <<<<<<<<<<<<<<<<<LFY      ------->GAMYB            --------->ZAT14    <-----                     ---------->DOF2     --------->ANAC58   ------->GAMYB --------------->AtSPL8-----                ----------->GT1          --------->ANAC58  --------->MYB46(3)      ---------->ID1<---               <---------TOE2(3)       ---------->DOF2--------->RAP2.6(2)<---------ANAC46   <-------- ---------GT1  <---------TOE1(3)----------->GT1   --------->MYB46(3) <----------DOF2 ================ --DOF2        --------->MYB59  <---------ANAC46 <---------At5g28300 ================================   tttcgacccatttagtttaggttaaaagcccattgggtttaaaaagccattaacagccacaaccacgcaatctttttgtgtactcgtctttattctgatt  28227500         --------->ALFIN1        <-------MYC3        ------->MYC3        ------->PIF5        <-------PIF5        ------->MYC2        <-------MYC2       <---------ANAC58       <---------ANAC58       <---------ANAC55(2)       <---------O2       <---------bZIP60(2)       <---------ANAC46       --------->O2       --------->ANAC55(2)    ------>ZmHOX2a(2)       =========================bZIP_DOF       --------->TGA1a        *TSS    ----------->HVH21        --------->GLK1(1)                                    ----------->GT1   <-----------HVH21 <----------DOF2 <<<<<<<<<TBF1                             ---------->DOF2 ================bZIP_DOF    <------ZmHOX2a(2) --------->ANAC58           ------>NtERF2 -----DOF2        <---------------AGL15        <---------ALFIN1          --------->DEAR3(1) ---->AHL20(2)    --------------->AGL15    <---------At4g35610         --------->LBD16 ------AHL20(2)  <-----------------AGL3    --------->At4g35610         ------>NtERF2----------->GT1-- -YAB1 <---------TGA1a       <---------GLK1(1) --------->ANAC58        <---------At4g35610       ---- ================bZIP_DOF   --------->ARR11(3) --------->DEAR3(1)  <---------ARR14(2)           ----- ================bZIP_DOF   <---------ARR11(3)>>>>>>>>>MYB2        --------->ARR14(2)          ------   taatgtgtcacgtggcactacttcttttgggatctcttcttcttcagcaacgcctcgtttccctccctagttccgccgagagaaaggagaaaaaaaaaaa  28227600                                      --------->ARR14(2)                                      <---------ARR14(2)                                     --------->GLK1(1)                                     <---------GLK1(1)                                    <---------ARR14(2)                                    ---------->TaMYB80                                <------NtERF2                               <---------ATERF1(1)                               ------>NtERF2                               --------->LBD16                              <---------ATERF1(2)                              --------->ATERF1(2)                              <---------DEAR3(1)                              --------->DEAR3(1)                             --------->ATERF1(1)                             <---------LBD16                        --------->KAN4(2)                        <---------ARR14(2)                        --------->ARR14(2)                       --------->HSFB2a(1)                       <---------HSFC1(2)                       <----------TaMYB80                       <---------KAN4(1)   --------->At5g28300                       --------->KAN4(1)   <---------MYB52(1)                            <------NtERF2                       <---------HSFB2a(1)--------->LBD16             <------ZmHOX2a(1) ------>NtERF2 ------->AHL20(2)     ---------->TaMYB80 <---------HSFB2a(2)    --------->ZAT6         --------->ANAC46 ------->GT1          <---------KAN4(2)  --------->HSFB2a(2)   <---------YAB1  <---------DAG2 ---->DAG2            ----------->ARR10 <---------LBD16  ----------->GT1       <----------DOF2 ---->DOF2         ----------->GT1  --------->ARR14(2)   <---------MYB46(3) ------>ZmHOX2a(1)   agtaaatgcaattgaaacggagggaatattcgccggcgaatttccggtaaatgtctgagtggtttatcagtaggaatcctactttttcgacggcattccc  28227700                                                                                             <-------                                                                                             --------                                                                                            ---------                                                                                          --------->ANAC46                                                                 --------->TOE2(3)        ------->GAMYB                                                           --------->ZAT14                --------->AtMYB61                             <---------AHL20(2)            --------->ARR14(2)            <---------MYB55(2)                             --------->AHL20(2)            <---------ARR14(2)            --------->MYB46(3)                   <---------GLK1(1)  <----------DOF2   <---------ANAC46      <---------AHL20(2)    <               ----------->GT1    <-----------GT1      <-------TEIL          --------->AHL20(2)     <         <-----------GT1    --------->AHL20(2)  --------->ARR14(2)------>ZmHOX2a(1)    <-----------GT1   aagtagttgtattacagttgtaaatcccaattttattctcctttcttcagaattcgattcgtatactcctcaatgcctatttaatagtttaaccaccacc  28227800                                                                                                 ----                                                                                                -----                                                                                                -----                                                                                                <----                                                                                                <----               --------->DEAR3(1)                                                  <---------HSFB2a(2)            --------->ANAC46                                                       --------->HSFB2a(2)  <---------CCA1(2)                                                                ------>ZmHOX2a(1) --ALFIN1<---------REM1(2)                                                 <--------HAHB4  --------->ARR11(3) ->AtMYB61  --------->ANAC58                                               <---------ICU4 --------->RVE1(1) >MYB46(3)  --------->ANAC58            <---------At4g35610 --------->TOE1(1)      --------->LBD16 ---------ANAC58               <----------DOF2             ------>ZmHOX2a(1)      <---------LBD16<--- ---------ANAC58------>NtERF2------>ZmHOX2a(1)    <----------DOF2         <---------ATHB12--------->CCA1(1)   atgcgtctctctaaacgccaactctcgcttcctctttctctctgcttctctactttctctcctcgttcccgtttccatcattttcctggaaaatatccag  28227900  Previous    Next  AGI:  At1g75200.1    Description:  flavodoxin family protein / radical SAM domain-containing protein. Identical to tRNA wybutosine-synthesizing protein 1 homolog (TYW1) [Arabidopsis Thaliana] (GB:Q8RXN5;GB:Q9FRL1); similar to ATR2 (ARABIDOPSIS P450 REDUCTASE 2) [Arabidopsis thaliana] (TAIR:AT4G30210.1); similar to ATR2 (ARABIDOPSIS P450 REDUCTASE 2) [Arabidopsis thaliana] (TAIR:AT4G30210.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO61161.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ60202.1); similar to tRNA wybutosine-synthesizing protein 1 homolog (GB:Q8H8N3); contains InterPro domain Radical SAM; (InterPro:IPR007197); contai Range:  from: 28224287    to: 28227370    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g75210.1    Description:  5' nucleotidase family protein. similar to 5' nucleotidase family protein [Arabidopsis thaliana] (TAIR:AT5G48960.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61156.1); similar to hypothetical protein OsI_013244 [Oryza sativa (indica cultivar-group)] (GB:EAY92011.1); similar to hypothetical protein OsJ_012225 [Oryza sativa (japonica cultivar-group)] (GB:EAZ28742.1); contains InterPro domain Purine 5' (InterPro:IPR016695); contains InterPro domain HAD-superfamily hydrolase, subfamily IG, 5' (InterPro:IPR008380) Range:  from: 28227530    to: 28232636    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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