Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                               --------->CCA1(2)                                             --------->ARR14(1)                   --------->ARR14(2)                                            <---------ARR14(2)              <---------MYB52(1)                                  --------->YAB1                    --------->ARR14(2)                               --------->YAB1<---------GLK1(1)      <---------ARR11(3)                              <------ZmHOX2a(2)         <------MYB46(1)    <-------GAMYB                       ---------->DOF2      --------->ARR11(1)      <---------ARR14(2)                    --------->ANAC58        <---------ARR11(3)      <---------ARR11(1)                    --------->AtLEC2        --------->ARR14(2)     <---------CCA1(2)                    ------>MYB46(1)         --------->ARR11(3)<-----------GT1  <---------ANAC46                    --------->ANAC58      ----------->ARR10--------------->AtSPL8 <---------ARR14(2)                    ------>MYB83 <---------YAB1         <------MYB83<-----------ARR10       --------->ARR11(3)    <---------ARR11(3)        --------->MYB59    <---------ANAC58          -       <---------ARR11(3)    --------->ARR11(3)       <---------MYB55(1)  <---------MYB46(3)       -- -ARR11(3)          --------->ANAC46   <---------ZAT6<---------MYB52(1)   <---------ANAC58   --------   tatctagtagaccttctctaccaagcaaagagatcataatagtgtagatatgctcgttaggtttgcaccatatctgccgttgcatatacttgaagagacg  28125600                           --------->ZAT14                         --------->At4g35610                      --------->MYB46(3)                     ------>NtERF2                   ----------->HVH21                  --------->LBD16                  <------NtERF2                  ------>NtERF2                                   <---------ANAC58                 --                <---------LBD16                                   <---------ANAC58         <-------PIF5              ------->GAMYB<---------ZAT18                    ---------->DOF2              ------->PIF5     <----------DOF2------>NtERF2                           --------->ANAC46              --------->At4g35610 ---------->HVH21--------->ANAC46                        <---------WRKY38(1)              --------->ZAT2 ------->DEAR3(2)--------->DEAR3(1)                      <---------WRKY12                 ----------- ->CCA1(2)   --------->MYB46(3)               --------->ZAT18------->GAMYB               ------->TEIL   aagcgacctttgccaatcgccgcgaccagcgaactctttgaacacgagtgcgaaatcgttcaacgaaagcttgtttttgaatatgtctaagcacctggcg  28125700            <---------MYB46(3)           --------->ALFIN1           <---------ANAC46        --------->ALFIN1       ------->MYC3       <-------MYC3             --------->WOX13(1)                     <---------ALFIN1      --------->O2       <---------ZAT2               --------------->AtSPL3                ---------      <---------O2       <---------At4g35610          --------------->AtSPL8               --------->LBD16      <---------ANAC46   --------->ZAT2              <---------At4g35610 --------->ANAC46 --------->HSFB2a(2)     --------->LBD16--------->At4g35610              --------->At4g35610<---------LBD16   <---------HSFB2a(2)   <---------LBD16  <---------At4g35610        <-----------HVH21 <----------DOF2       --------->ARR14(2) ------->HSFC1(2)   <---------ZAT14           <---------O2  <----------DOF2           <---------GLK1(1) >RAV1(2)<---------MYB46(3) ----------->GT1   --------->O2------->TEIL<---------REM1(2)<---------ARR14(2)   atgctcccgcgtggtgggagactgctcagcttgttaatcagcgattcgacgtcgtagctgtactttcctttctccacggagacggaggggttcccgagaa  28125800                                                                                           --------->GLK1(1)                                                                                           <---------GLK1(1)                                                                                           <---------HSFB2a(1)                                                                                           --------->HSFB2a(1)                                                                                          <----------                                                                                          ------->TEIL                                                                                          --------->GLK1(2)                                                                                          --------->ARR14(2)                                                                                          ---------->TaMYB80                                                                                          <---------ARR14(2)                                                                                          <---------ARR11(1)                                                                                         <---------ARR14(1)                                                                                      <------NtERF2                <----------DOF2                                                      <---------DEAR3(2)                --------------------->WRI1                                           ------>NtERF2               <---------ANAC58                                                     <---------DEAR3(1)    <----------DOF2                                                               <-----------HVH21   ------>ZmHOX2a(2)                                                              ------>NtERF2  <------ZmHOX2a(2)                                                               <---------SPL7  <---------RVE1(1)                                               --------->MYB52(1)<---------At1g77200 --------->AGP1<---------ANAC58                                  <---------ARR14(2)--------->ATERF1(1) --------->ARR14(3)                                       ------>ZmHOX2a(1)       <---------ATERF1(1) --------->ARR14(2)                                     ----------->RAV1(2)      --------->ATERF1(2) <---------ARR14(2)                <------ZmHOX2a(1)   ------>ZmHOX2a(1)    <-------GAMYB<---------CCA1(2) <---------ARR14(3)         --------->LBD16       <---------GLK1(1)        <---------MYB46(3) <---------ARR11(3)      <---------At5g28300      --------->GLK1(1)     ------------>AtMYB77  <------ --------->ARR11(3)     <-----------GT1        <---------YAB1    --------->ARR14(2)<------NtERF2----- >LBD16    <----------DOF2<---------LBD16    <-----------GT1    <------ZmHOX2a(1)<---------ATERF1(2)   cgagatctttagtctttgctttgattttaccggagaaggagcatggtttacgatttcctcctgagaggaaacggagacggttgccgtcggcgaatctccg  28125900                                        <---------ANAC46                                     --------->ALFIN1                   <---------HSFB2a(2)  <---------ANAC58                   --------->HSFB2a(2)  <---------ANAC58            <-------TEIL   <---------At4g35610               <---------AtMYB61           <------MYB46(1)                 <---   --------->At4g35610         <------ZmHOX2a(1)                 <------MYB83           <---------ZAT14 -ARR10 ------->TEIL       <------ZmHOX2a(1) <-------GAMYB      <---------TOE1(2)       --------->ZAT18 ---LBD16         <---------LBD16 --------->ALFIN1 <---------ARR14(2)                   <---------ZAT18 ---->LBD16    <---------GLK1(1)  <---------AtMYB61--------->ARR14(2)                <---------ZAT6   gtttccgatgaagcttgaattctggatgaggaaggagaggtggtgtgagttgggatttggaattgctaggttcattttgggtaactagagttcacataag  28126000             --------->ANAC58        --------->LBD16                              --------->RAP2.6(3)             --------->ANAC58       <---------HSFB2a(2)                           <---------At5g28300          ------>ZmHOX2a(1)         --------->HSFB2a(2)                          <-----------GT1      --------->ARR11(3)           <---------LBD16                               --------->MYB52(1)      <---------ARR11(3)    <---------ARR11(3)                              <---------TOE2(3)      <---------ARR14(2)    <---------GLK1(2)------------>CBF               <---------YAB1      --------->ARR14(2)    --------->ARR11(3)                          --------->CCA1(2)   <-------- ---ZmHOX2a(1)   ----------->GT1  <---------LBD16          <------------CBF <---------TOE1(3)   gattcaaaaatcctccagcaagtgaaacgagattttctcgggaaaatcgcaattcgatttgaattgaatcagagatttaagattaacggctaagttacta  28126100                                  --------->ATHB12                                 <---------TOE2(3)                          --------->ANAC58                          --------->ANAC58                                   ---------->DOF2                       --------->TOE1(2)                                 --------->ANAC46                      --------->ANAC58                                   --------->ANAC58                    ---------->DOF2<------------CBF                      --------->ANAC58                   <---------GLK1(2)<---------WOX13(1)          <---------GLK1(2)            <---------HSFB2a(2)  <---------YAB1                 <---------ARR11(3)       ------>MYB83--------->ARR14(2)                           --------->ARR11(3) --------->MYB46(3)<---------ARR14(2)                          <---------RVE1(1) ---GT1------>MYB46(1)--------->ANAC58    --------->At4g35610 ----------->ARR10   <---------ZAT18   gtcaccaccaagctctagacagaaacgcacgaattaagattggcagtagaatagtttagaagaagagattttctcacccaaaagctcgctctctaggtga  28126200                                                    <------------CBF                                                  --------------->AGL15                                                  <---------YAB1                                          <-------MYC3                                          <-------MYC4                                          ------->MYC2                                          ------->MYC4                                          ------->MYC3                                          <-------MYC2                                          ------->PIF5                                          <-------PIF5                                         --------->TGA1a                                         <---------O2                                         <---------TGA1a                                         <---------ANAC46                                         <---------ANAC55(2)                                         --------->O2   <---------ANAC46                            <                                     ----------------->PIF3(1)                               --------                             ======================bZIP_DOF  --------->MYB52(1)              --------    <------NtERF2            <----------DOF2      <---------------AGL15                    <---------LBD16   --------->LBD16          <---------ANAC58  <---------ARR14(2)                   <-----------HVH21-   ----------->GT1          <---------ANAC58  --------->ARR14(2)            --------->MYB46(3)      <  <---------ANAC46          <---------ANAC46  <---------GLK1(2) ------->GAMYB     --------->LBD16  <- <---------LBD16       --------->ALFIN1  ===============================MYC_MYB <---------LBD16<-----   aatggcggaaaaatggaagaagagggaggggcttgaagaagacacgtggattcttattgtggataacagtctcgagtaatcacccggtcattacccggtt  28126300      <---------ANAC58      <---------ANAC58                                                                     --------->ZAT6 --------->ATHB12                                                                         --------->ZAT14 -------->HAHB4                                                                           --------->ZAT18 --------->YAB1                                            <------NtERF2                --------->ZAT14 <---------ICU4       ----------->GT1                     ------>NtERF2                 <---------ZAT18 ---------YAB1      <---------WOX13(1)                   <---------RAP2.6(2)            --------->ZAT18 --->GT1    --------->LBD16                              <---------ANAC46          <---------YAB1 ->LBD16   --------->LBD16                        --------->AHL20(1)             <---------ZAT6------ -------->ICU4    --------->ATHB12                <---------AHL20(2)       --------->DAG2 <---------ZAT18 ---------ATHB12 <---------AHL20(2)              --------->AHL20(2)       ---------->DOF2 <---------ZAT14 --------TOE2(3) <---------YAB1            <------ZmHOX2a(2)           --------->ANAC58 <---------ZAT14 -----DOF2<---------LBD16        <---------RVE1(1)--------->AHL20(2)   --------->ANAC58<---------ZAT6   taatgattacttcccggttttaattggttaactcgatatttttcgatcaaaaaaaattggcgcctaaaattgcaagaaaagtagtattagtgtacactag  28126400                                                                <---------AHL20(2)                                                            <------MYB46(1)                                                            ----------->GT1                    ------                           <---------AHL20(1)               <---------DEAR3(2)             --------->YAB1                     ----------->GT1                        <------MYB83             --------->ANAC46  ----------->GT1    --------->YAB1                 <---------HSFB2a(2)            <---------HSFB2a(2) ----->GT1     --------->AHL20(2)----------->GT1    --------->HSFB2a(2)            --------->HSFB2a(2)   taaatagtagaatacaattacattggtaatatatgttgtaaactagacaatgttctataagtcggtttaattgtccatccatcttctaggcaatcgaaac  28126500  Previous    Next  AGI:  At1g74850.1    Description:  PTAC2 (PLASTID TRANSCRIPTIONALLY ACTIVE2). similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G02860.1); similar to putative chloroplast RNA processing protein [Oryza sativa (japonica cultivar-group)] (GB:AAO18446.1); similar to hypothetical protein OsI_013628 [Oryza sativa (indica cultivar-group)] (GB:EAY92395.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64417.1); contains InterPro domain Smr protein/MutS2 C-terminal (InterPro:IPR002625); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 28122510    to: 28125975    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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