Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                 ---------->DOF2                                                             ----------->HVH21                                                           --------->ALFIN1                                                           <---------ANAC46                                                         <---------ANAC46                                                         <---------ANAC58                                                         <---------ANAC58             <---------At4g35610 --------->At4g35610                               -------->ATHB1                     --------->At4g35610 <---------At4g35610             <---------YAB1    --------->ATHB51        <----------DOF2 <---------ZAT2               --------------->AGL15--------->ATHB12  <---------YAB1   --------->ZAT2 --------->ZAT2           --------->KAN4(2)       <---------YAB1   <------ZmHOX2a(1) --------->GLK1(2)   ttcagcttagacaatagacattgttgtatattcttgttatagccattttggtattattggtgtgtgaaaggatgatactttgtggagaagctgagagaaa  28090100                                                              ----------->HVH21                                                            <---------ANAC58                                                            <---------ANAC58                                                       --------->CCA1(2)                                                      --------->ARR14(2)                                                      <---------ARR14(2)                                                      --------->ARR11(3)                                                      --------->ARR11(1)                                                <-----------GT1           --------->ANAC55(2)                                              --------->YAB1----------->GT1    ----------->GT1              <---------YAB1                  --------->AHL20(2)  <----------DOF2           ---------   <---------GLK1(1)              <-----------GT1     <---------ARR11(3)  <---------ANAC55(2)      <-  ---------->DOF2   ----------->GT1    ----------->HVH21    <---------ANAC46  <---------------AtSPL8   actggaaagcccaatttttattctgttaaatgggttttactctgacaattatacaagatatggggtgactttgaataagtaatgtacaaagtttctcaat  28090200                                                                               --------->ANAC58                                                                               --------->ANAC46                                                       <----------DOF2         --------->ANAC58                                                    <-----------GT1     <---------MYB46(3)                                            ----------->GT1             <------MYB83             <---------ANAC46           <---------AHL20(2)              ----------->GT1        --------->ARR11(3)              <---------AHL20(1)              <------MYB46(1)            <-   <---------ANAC46                     --------->AHL20(1)           <---------ANAC58           ----- --->CBF<---------ARR11(3)              --------->AHL20(2)           <---------ANAC58           ----- ---------DOF2                   ----------->GT1 --------->ICU4      <---------ANAC46  --------->ALFIN1   tctttgtgtagaacttcgtggacaagagagctagatggctaataaaatgtaatttttctttgtaattcatggcttggttacacgaccaagtgttgaaacc  28090300                     <-------GAMYB            <---------ANAC58            <------MYB46(1)            <------MYB83            <---------ANAC58           <---------MYB46(3)           <---------AtMYB61           --------->MYB55(2)           --------->MYB46(2)           --------->MYB52(2)           --------->MYB111(1)           --------->MYB111(2)          <---------MYB55(1)         <---------MYB52(1) --------->ICU4       <---------ANAC46     <---------YAB1       <---------ANAC58   --------->YAB1       <---------ANAC58  <---------YAB1   <---------At5g28300<---------MYB52(1)  <---------ICU4<------NtERF2<---------ICU4                                    <---------LBD16  <-----------GT1  <------NtERF2                      <---------ZAT6          <---------ANAC46 --------ICU4   --------->ATERF1(1)               <---------MYB52(1)   --------->ARR11(3) ---->TOE1(3)  <---------ATERF1(1)             <-----------RAV1(2)   <---------TOE2(3) ---->TOE2(3)  <---------MYB46(3)            <-----------HVH21       <---------YAB1               ---   ttaattactgcgtttggtggctccgttgtcataattctggtgagaggcttcaggtagtgttataggttactaagatagttttggggaacagtttttttta  28090400                                                                    ---------->DOF2                                                                 --------->AtLEC2            <----------DOF2                                    <---------ANAC58          <---------YAB1                                   --------->ATHB12         <-----------GT1                                  <---------YAB1      --------->YAB1         <---------ARR11(3)           --------->GLK1(2)  <---------------------WRI1         --------->ARR11(3)    <---------ANAC58<---------ANAC58<---------ANAC58 ------>ARR11(3)               <---------ANAC58<---------ANAC58<---------ANAC46   gttcttgatattatctttatgtgttttctctaagcgtgtgattctgttttcttgcagacgatgattcgtgcaaagcacattagtaatctttctagctcag  28090500                                                                                           <---------At4g35610                                                                                          ------>NtERF2                                                                                          --------->ANAC58                                                                                      --------->ANAC58                                                                            <---------bZIP60(2)                                                                            <---------bZIP60(1)                                                                            <---------ANAC58                                                                 <------ZmHOX2a(1)    --------->ANAC46                                                           --------->At4g35610  --------->HSFB2a(2)                                   <---------At4g35610     <---------At4g35610<------NtERF2<------NtERF2                                   --------->At4g35610   ------->MYC4       <---------ANAC58                                <---------At4g35610      ------->MYC2       --------->bZIP60(1)                               --------->ALFIN1          <-------MYC2       <---------ANAC46      ---  <------ZmHOX2a(2)  ------>ZmHOX2a(2)                   ------->MYC3    --------->ALFIN1 --------->ANAC58 <---------ARR11(3)<---------ARR14(2)                    <-------MYC3---------->DOF2  --------->ANAC58 --------->ARR11(3)--------->ARR14(2)         --------->GLK1(2)<---------TOE2(3)<---------HSFB2a(2) <   caagatcattttttcttagtggatcgagaccgagtgctgctgatggaaattcttgtacatgtgctgaggatgaaagtggcgtctcgaaacgccagcaaat  28090600                                                    --------->ZAT2                                                    --------->At4g35610                            --                                           <---------ZAT2                                      ------                                           <---------At4g35610                 ----------->GT1 ------                                           ----------->RAV1(2)                 <------MYB46(1) <-----        <---------------AtSPL8             --------->ZAT2                    <---------ANAC46 <------    <---------ZAT14           --------->GLK1(2)     <---------ZAT2  --------->ZAT6           <------- ------>MYB59          ---------->DOF2     --------->At4g35610   <-----------GT1     --------->MYB46(3) ------ZmHOX2a(1)  ----------->GT1      <---------At4g35610  --------->AHL20(1)<------MYB83 <--------   taggactgaagttgtacagactggtaaaagagcatctaatttagcagctggactagctggaagtatattaccagtagaggctggtaaaccgctggtggtc  28090700                                               <-----------GT1                                        ----------->RAV1(1)      <-------GAMYB                     ==========================RAV                    <---------YAB1     <---------MYB46(3)               --------->LBD16                        --------->GLK1(2) -------->DOF2                       --------->ANAC58                       <---------GLK1(2) --->PCF5                            --------->ANAC55(2)         --------->LBD16       --------->YAB1 --->TCP16(1)                        --------->ANAC58           <---------LBD16 ----------->GT1 ----PCF2              ------>NtERF2 --------->HSFB2a(2)   <----------DOF2  --------->ARR14(2)      < ---TCP16(2)          --------->LBD16--------->ANAC46 ----------->RAV1(2)   <---------ARR14(2)      - --MYB46(3)         <---------LBD16  <---------HSFB2a(2)------>ZmHOX2a(1) ----------->ARR10  <------- -AtMYB61        <-----------GT1    <---------LBD16------>ZmHOX2a(1) ---------->DOF2  <---------ATHB12   ccaaagacggttgagcatttcacccggccatcgcttcttccgcaacatgtttcctctcctgctttgccagggaaagcagattctgtaaatcatgcttctg  28090800             <---------O2             --------->O2             <---------TGA1a             <---------ANAC46             <---------ANAC58             <---------ANAC58             <---------bZIP60(2)       <---------RVE1(1)      <---------TOE2(3)                --------->GLK1(1)     ---------->DOF2                  <---------ARR11(3)                       --------->CCA1(2)    <     ==================bZIP_DOF       <---------ARR14(2)                      <---------ARR14(2)    <   <---------YAB1                     <---------GLK1(2)                  <-----------HVH21       ---- --------->YAB1     <---------SPL7    --------->ARR11(3)            --------->AHL20(1)         ------ <--------HAHB4   <---------------AtSPL8          <------MYB83      <---------AHL20(1)         <----- ---------YAB1    <---------------AtSPL3          <------MYB46(1)   --------->AHL20(2)         <----- -------->ICU4 --------->ALFIN1       --------->ARR14(2)            <---------AHL20(2)         ------ --At4g35610 --------->TGA1a        ----------->ARR10        ----------->GT1  --------->ARR11(3)<----   ctattattaaagaagacgtgggggtacctattggtgatcagatattcaaggctggtattggaaatgtaaatttattgtcagatatagcaaactataagat  28090900       --------->At4g35610 ----------DOF2 ---------DAG2 -->ZmHOX2a(2)                     ---------->DOF2 --->ARR11(3)            <------MYB83                                 <---------At4g35610 ----ARR11(3)            <------MYB46(1)              ------>ZmHOX2a(1) ----ARR14(2)            <---------MYB46(3)         ------>ZmHOX2a(2) --------->At4g35610         <-- --->ARR14(2)        <---------MYB46(3)        <--------P           <-----------RAV1(2)           --- --ZmHOX2a(2)        --------->MYB111(2)     ----------->GT1------>NtERF2  ---------->DOF2 ----------   ccctttatcagatggaactgaagttgttggtttgcctaaaagctgtatggttgatcctactcggcctatttcaggtgtaaagtcttcaaatgtgaaagtc  28091000  Previous    Next  AGI:  At1g74750.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G18900.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G18900.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO62487.1); similar to Os12g0638900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067384.1); similar to hypothetical protein OsI_038011 [Oryza sativa (indica cultivar-group)] (GB:EAY84052.1); contains InterPro domain Smr protein/MutS2 C-terminal (InterPro:IPR002625); contains InterPro domain Pentatricopeptide repeat (InterPro:I Range:  from: 28090461    to: 28093028    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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