Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                           <---------ARR14(2)                   ------->PIF5                                          --------->GLK1(2)                   <-------PIF5                                          --------->ARR14(2)       ---            <---------ANAC58                                            <---------GLK1(2)     <------            <---------ANAC58                 ---------->DOF2        ---------->DOF2        <---------GLK1(2)           --------->HSFC1(2)         <---------GLK1(2)          ----------->GT1 <---------ARR14(2)           <---------HSFC1(2)    <---------STY1(2)            <------ZmHOX2a(1)  --------->ARR14(2)          --------->GLK1(2)      --------->STY1(2)           <---------YAB1      --------->GLK1(2)---   aaacacagtgagaagcttgcacttgcatttgctctagctagattgtccaaaggagcaaatatcaggatagtaaagaatctgagaatttgcagagattgtc  28036000                                                                                                -----                                                                                                -----                                                                                               <-----                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                    <---------ANAC58                                                                                    <---------ANAC58                                                                                   <---------MYB46(3)                                                                                  <---------ARR14(2)             --------->MYB52(1)                                                   --------->ARR14(2)             <---------DOF5.7(2)                                                <---------HSFC1(2)          --------->At4g35610     ----------->GT1                               --------->HSFB2a(1)          <---------At4g35610    <--------P                                     <---------HSFB2a(1)         ------->TEIL          ----------->GT1                                  --------->HSFC1(2)   <---------MYB52(1)<---------TOE2(2)                                          <---------DEAR3(2) ------>ANAC58       <---------TOE1(2)                                         <---------DEAR3(1)---- -----HVH21<---------MYB52(2)  <---------ANAC46               <----------DOF2<------ZmHOX2a(1) <----- ------>ANAC58       <---------TOE1(3)                  --------->GLK1(1)  <---------TOE2(3)   <-----   acgctgttatgaagctaacgtcgaaggtttatggggtagaaatattggtccgagacagaaatcgctttcattcatttaaggacggttcttgctcatgccg  28036100    <---------ZAT6 ---->LBD16                       <---------ALFIN1 ---->At5g28300                 --------->AtMYB61                                      --------->At4g35610 ----ANAC58                     <---------ALFIN1                                       <---------HSFC1(2) ----ANAC55(2)          --------------->AtSPL8                 --------->MYB46(3)      --------->HSFC1(2) --->ANAC55(2)          <---------------AtSPL8                 <xxxxxxxxxxxxxxxxxxsmallRNA(le3) ----ANAC46<---------TOE2(3) --------->ANAC46                ------->TEIL --------->AtMYB61<---------ALFIN1 ------->HVH21          --------------->AtSPL3     --------->ZAT18       <---------bZIP60(1) ----ANAC58--------->DAG2   --------->ZAT18        <---------ZAT18       --------->bZIP60(1)      --- ----bZIP60(2) ----------->GT1 --------->ANAC46 <---------ANAC46       <---------ZAT18 <---------HSFB2a(1)   tgactactggtaaaaggttgtgaatagatgtacaccacacatatatcattttgtggactaatgcatccactagtgacctcaccaatggaagcttcactcc  28036200                                                                                     <--------P                                                                                   ----------->GT1                                                                                  --------->LBD16            --------->At4g35610                  <---------ANAC58                <---------ANAC46            <---------At4g35610                  <---------ANAC58      <---------ANAC58        <-----------HVH21                  --------->ATHB12            <---------ANAC58  <----------DOF2       <----------DOF2                --------->ARR11(3)  <---------TOE2(3)     <---------LBD16 -------->RAV1(1)    --------->ZAT14  <---------ARR11(3)--------->MYB52(2)    <---------DEAR3(1) <---   caacacaaactttcagatgtctctactctctataacttgaggtcttcatttgcgaggtttgtggtttacattgccttgggactgcgggtaactttgatac  28036300                                                                               <----------DOF2                                 <------------CBF                           ------>MYB83                             --------->ANAC58                               ------>MYB46(1)                           --------->CCA1(2)                              <---------MYB111(2)                    <---------ANAC55(2)                                   <---------MYB46(2)                    --------->ANAC58                                      <---------MYB59                    ----------->GT1                                       <---------MYB111(1)                    --------->ANAC55(2)            ----------->GT1       --------->ANAC46           -                  <<<<<<<ZML2--------->ANAC46    <------------CBF      <-----------GT1              -               <---------HSFB2a(2)             <---------YAB1       --------->GLK1(2)           -----               --------->HSFB2a(2)             <---------MYB52(1)  --------->ARR14(2)           -----      <---------YAB1--------->ANAC58          <-------GAMYB        <---------GLK1(2)           ------ -------DOF2 <---------ANAC46--------->ANAC58<---------ZAT6        <---------ARR14(2)       ---------   tttgcattcttcttggcctagaacgtaatatacgaaattgttttggactgttattgtaaatttctaacagattctaccaaactttgacgagaaatatcaa  28036400                                                                               --------->TOE1(3)                                                                   <------ZmHOX2a(2)                                                                  --------->ARR11(3)                                                                  <---------ARR14(3)                                                                  --------->ARR14(3)                                                                  --------->AGP1           --------->ARR14(2)                                     <---------ARR11(3)         <---------MYB46(3)                                       --------->ARR14(2) -------->ANAC58                                                  <---------ARR14(2) -------->ANAC58                                                  <-----------ARR10 ---->ANAC58                                                      <---------GLK1(2)          <------- ---->ANAC58            *TSS                                 <-----------HVH21 --------->TOE2(3) <--- --->WOX13(1)        ---------->DOF2        <---------DEAR3(2)   <---------CCA1(2)   <---------AHL20(2) >ARR11(3) <---------ARR14(2)   --------->TOE2(3)    <----------DOF2------>ZmHOX2a(2)--------->AHL20(2)   gcacgtcttcgtggttctggttcaaaagtctcaacctttgaatcgtcgtttccttctttctcgcttcagatcttcgaaaaaccctaattttttgtataat  28036500                  --------->ZAT2                  --------->At4g35610                  <---------ZAT2                  <---------At4g35610                 <---------DAG2                <-----------RAV1(2)                   <----------DOF2                               <              <-----------HVH21                   ------->TEIL          --------->DEAR3(1)          -          <---------RAP2.6(2)                    <-----------GT1  <---------ARR14(2)               --     <---------AtLEC2<-------TEIL           <----------DOF2       --------->ARR14(2)               -- --AHL20(2) <---------At4g35610            <---------DAG2     --------->AtMYB61        <---------ANAC58 --------GT1--------->At4g35610         <---------ALFIN1  --------->MYB46(3)           <---------ANAC58   ttcgcttccatggctgcttcagctgcattctccatttcatcaccaccttttgtaccctttaccaccaaaattcgcagaccatttctcttgcttactccaa  28036600                               <---------ZAT18                                          <---------ARR11(3)                         --------->GLK1(2)                                              --------->ARR11(3)                       <---------At4g35610                                              --------->ARR14(2)                    <---------ANAC58                                                    <---------ARR14(2)      <---------ALFIN1 <---------ZAT2                                           <---------ZAT14 ---------ARR11(3)  <---------ANAC58    ------>ZmHOX2a(2)                       --------->ZAT14 -------->ARR11(3) --------->ABI4(2)  <---------ARR11(3)                     --------->MYB52(2) ------->RVE1(1)<---------ANAC58      --------->ARR14(2)                   <--------P  <---------CCA1(2) ------->CCA1(1)<---------ANAC58   ------>ZmHOX2a(1)                    <---------TOE2(3)   aatatcccaaacctgtttcggtgcgagcttctgtgtcctcgatctccatcgatgaaaaattgccagtccaaacaaaggttagtttactagtatcttgttt  28036700                     <---------ANAC46                                                     <----------                  --------->WRKY12                              --------->GLK1(2)       --------->YAB1                <----------DOF2                                <---------GLK1(2)       <<<<<<<<<ARR2              ------>ZmHOX2a(2)                              ----------->ARR10         <<<<<<<<<ARR1  --------->ICU4------>ZmHOX2a(1)                       --------->ICU4            <-----------GT1   -   tgtattaatggtttgatcctttgacttggagaatgaattagacaaaattgtattagtcatgttgagattctattgagttttgtttcacaatcttactata  28036800                                                                                                  <--                                                                                               ------                                                                                               <-----                                                                                             <-------                                                                                     --------->LBD16                                                                      --------->DAG2<---------HSFB2a(2)                                                                     ---------->DOF2--------->HSFB2a(2) -GT1    <----------DOF2           ----------->ARR10  --------->HSFB2a(2)          <---------LBD16<-- -------->At4g35610          ---------->DOF2          <---------HSFB2a(2)         ----------->RAV1(2)   ttagctgtattctttttatgtagaatttgatcaaagtgagatttgttttcttacttctgaaaccagaaatgaaaagtaaggctcttctgggataatcctt  28036900  Previous    Next  AGI:  At1g74630.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G29760.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64554.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 28034182    to: 28036113    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g74640.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO64553.1); contains domain SSF53474 (SSF53474); contains domain G3DSA:3.40.50.1820 (G3DSA:3.40.50.1820) Range:  from: 28036424    to: 28038434    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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