Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                  --------->AHL20(2)           <---------DAG2                                       <---------AHL20(1)           <----------DOF2    <-----------GT1                   <---------AHL20(2)       ---------->ID1   <---------YAB1              --------->ATHB51                                -       <-----------GT1 <---------TOE1(2)            --------->ATHB12   <-----------GT1         ------      <-----------GT1  <---------TOE2(2)            <---------ICU4  --------->YAB1          <--------    <---------ICU4   <---------SPL7                --------->ICU4 --------->AHL20(1)  <-----------GT1 ---------AHL20(2)  <---------ANAC58               <---------YAB1 --------->AHL20(2)<---------ARR11(3) -------->AHL20(2)  <---------ANAC46              --------->TOE2(3)<---------YAB1   --------->ARR11(3) ------->AHL20(2)   <---------ANAC58  <------ZmHOX2a(1)         --------->AHL20(1)  --------->AHL20(1)   atttaatttttccctttttgtgtcgtatgattttacttcaggaccactaaaacattattgctctaaaatattataacttgacaaaatatatccactttaa  28024000                                                                      <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                     <----------DOF2                                                                 <xxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                 ------>NtERF2                                                                --------->ANAC58                                                                --------->ANAC58                                                                <---------ALFIN1                                                              <---------ALFIN1     --------->TOE2(3)                                                              <xxxxxxxxxxxxxxxsmallRNA(se3)                                                             <xxxxxxxxxxxxxxxxsmallRNA(se3)                                                             <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                             <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                             --------->TOE1(2)     --------->TOE1(3)                                                            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                            <xxxxxxxxxxxxxxxxsmallRNA(s)  <----------                                                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                            --------->DEAR3(2)  --------->ARR14(2)                                                           ------->TEIL<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <-----                                                        <xxxxxxxxxxxxxxxsmallRNA(se3)   ----------->RAV1(2)                                                     <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   ------>NtERF2                                            <xxxxxxxxxxxxxxxsmallRNA(le3)       <---------GLK1(2)                                           --------->ETT(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) -------->AHL20(2)  <----------ID1      --------->ICU4<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<---------ATERF1(1) --->AHL20(2) ----------->GT1   ---------->DOF2 <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)   <xxxxxxxxxxxx --DOF2      ------------------------>ANAC81<<<<<<<<<<<<<<<<<LFY--------->ANAC46<---------ARR14(2)   aataaaacaatttgagaagaaaaaaacaaaaaaaaaaaggaaatgttgacagtgggatttgaacccacgccctttcggaccagaaccttaatctggcgcc  28024100                                  ---------->DOF2          ------>NtERF2        <---------HSFB2a(2)        <xxxxxxxxxxxxxxxxsmallRNA(i)       <xxxxxxxxxxxxxxxxxsmallRNA(si3)      <xxxxxxxxxxxxxxxxxxsmallRNA(si3)      <xxxxxxxxxxxxxxxxsmallRNA(se3)     -------->P                <---------HSFC1(1)     <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <---------ICU4     ------>MYB83              --------->HSFB2a(2)     ------>MYB46(1)           --------->HSFC1(1)   <---------AHL20(2)     <xxxxxxxxxxxxxxxxxxxsmallRNA(i2)           <---------AHL20(2)     <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)          --------->AHL20(2)    <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)           --------->ATHB51    <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         <---------YAB1             <----------DOF2   --------->AtMYB61    *TSS   >>>>>>>ZML2     --------->ICU4          --------->ANAC46 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)        <---------ICU4        ------>ZmHOX2a(1) -RAV1(1)<xxxxxxxxxxxxxxxxsmallRNA(s)       --------->ICU4   <---------ICU4            --------->ZAT18 -NtERF2<xxxxxxxxxxxxxxxxsmallRNA(s)        <---------YAB1  --------->AHL20(2)     ------>NtERF2 <--- xxxxxsmallRNA(le3)  <----------DOF2      --------->YAB1    <---------ATHB51      --------->DEAR3(1)   ttagaccaactcggccatatcaacttttgtgttctagaaagaaaacataattatttattcaaattattcctacgcgcttcttcgccgagtgcgatgggtt  28024200                                                                                                 ----                                                                                           <---------                                                                                          --------->ATHB12                                   <---------ZAT18                <-----------GT1        ------>ZmHOX2a(1)                                   <---------ZAT14             <---------GLK1(1)         ============                         <---------At4g35610                 --------->ATHB12            ============                      ---------->DOF2       <----------DOF2<---------WOX13(1)            <---------YAB1                  <---------MYB46(3)   <----------DOF2  <---------YAB1                  ------------- --------GT1<---------REM1(1)      --------->ZAT14    --------->YAB1                   --------------   tactactcccagcgttgtagccgttgaagctcatcagtgaactttactttcatccattgtaattgatttctccagttgttttctgagtctcctcattgag  28024300               --------->HSFB2a(2)      ------->TEIL      -------->P     <-----------GT1    ------>ZmHOX2a(2)   <------ZmHOX2a(2)  --------->ARR11(3)  <---------ARR11(3)  --------->ARR14(2)  <---------ARR14(2)  <-----------ARR10 <------ZmHOX2a(1) ------>DOF2  <-----------GT1 ---CBF <---------DAG2                                                          <---------ARR11(1) ==========HOX2a_HOX2a          --------->At4g35610                             ------->TEIL =========HOX2a_HOX2a<---------AHL20(2)<------------CBF                         --------->ARR14(2) -->AGL15<----------DOF2        <---------At4g35610                             <---------ARR14(2) --->AGL1<---------DAG2         --------->LBD16                <----------DOF2 <---------CCA1(2)   --   aaaggatctacctttttctcgattttattctctccgctgagaattgtctagggttcttctgtcttctttgctatttctctcgtatctggattttagggat  28024400                                                                                               <-----                                                                                            ---------                                                                                           ------>ZmHOX2a(2)                                                                                          <------ZmHOX2a(2)                                                            --------->ANAC55(2)          <---------ARR11(3)                                                            <---------ANAC55(2)          <---------ARR14(2)                                                      --------->LBD16                    --------->ARR11(3)                        --------->KAN4(2)            --------->ANAC46----------->GT1     --------->ARR14(2)                       <---------KAN4(1)             --------->HSFB2a(2)                <------ZmHOX2a(1)                       --------->KAN4(1)             <---------HSFB2a(2)--------->YAB1 --------->HSFC1(2)                   <---------YAB1               --------->At4g35610--------->ZAT14     <---------HSFC1(2)              <------MYB46(1)             ------>ZmHOX2a(1) --------->ANAC55(1)        --------->HSFB2a(1)             --------->MYB59   <----------DOF2  <---------At4g35610<---------ZAT14     <---------HSFB2a(1)        <---------YAB1<---------YAB1  <---------PCF2----------------->AGL1      <-----------HVH21---- -------->DOF2<------MYB83     <---------DAG2------>ZmHOX2a(1) ------->TEIL--------->AHL20(2)------>ZmHOX2a(1)   tcaaagtattttcattaggttacgattattctcctttatgggtcctcctctgcttccgaaacatgtaactgcagttataaaatgtcagaaggatcctatg  28024500                                                  <----------DOF2    <---------HSFB2a(2)                    --------->ANAC58    --------->HSFC1(1)              <------MYB46(1)                                              ----    <---------HSFC1(1)              <---------MYB46(3)                        --------->DAG2     <---    --------->HSFB2a(2)             <------MYB83  <---------DAG2     <-----------HVH21           ---- --------->ARR11(3)                 --------->MYB52(2)          --------->ZAT14                  <--- ----YAB1                          <---------AtMYB61            <---------ZAT14              -------- >TOE1(2)                         <--------P --------->YAB1  <---------At5g28300         <---------YAB1 ------>DOF2               ---------->DOF2 --------->ANAC58  -------->P      ---------->DOF2<--------   aaagctctagaaatgttcaattcgatgagaaaagaggttggtttcaagcatactttatctacttaccgcagtgtcatcgaaaagcttggatattatggaa  28024600                                            <------MYB46(1)                                            <------MYB83                                          ---    --------->ANAC58             --------->LBD16                                                <----    --------->ANAC58            <---------LBD16                                               <------    --------->ANAC46           <---------LBD16                                             <---------YAB1 ----->HSFC1(2)             <----------TaMYB80            ----------->HVH21                <---------TOE2(3) ------HSFC1(2)             --------->GLK1(1)           <---------ANAC58                 <---------ICU4 ----->HSFB2a(1)            <---------GLK1(1)           <---------ANAC58         --------->ICU4 <---- ------HSFB2a(1)            --------->CCA1(2)         <---------YAB1  <-----------RAV1(1)--------->YAB1 --->GT1                   <---------ARR14(2)        ------->MYC3    <---------TOE2(3)  --------->ICU4 -TOE2(3)--------->AtLEC2  --------->ARR14(2)        <-------MYC3 <----------DOF2<---------ATHB12<---   aattcgaagccatggaagaggttttagtggatatgcgggagaatgttggtaaccatatgcttgaaggggtttatgttggggcaatgaagaattatggtag  28024700                                                                                                <----                                                            --------->MYB52(1)        <---------YAB1 ------->DOF2                                     >>>>>>>>>ARR1                     --------->YAB1<-- --MYB46(1)                                       >>>>>>>>>ARR2                    --------->ICU4 <-- --P---------->DOF2                              --------->ATHB12                <---------------AGL15 --MYB83   <---------HSFB2a(2)                  <---------YAB1              --------->YAB1     <----- ---ZmHOX2a(1) --------->GLK1(2)    <------ZmHOX2a(1)      <---------SPL7--------->YAB1    <---------ZAT14   gaaagggaaagttcaagaagctgttaatgtgtttgaaaggatggatttttatgattgtgagcctacggttttctcttataatgctattatgagtgtattg  28024800                                              --------->LBD16                                             <---------ANAC58                                             <---------ANAC58                                             <---------ANAC46                                            <---------LBD16      ----------->HVH21      <---------MYB46(3)                  <---------ARR14(2)   ----------->RAV1(2)      ----------->GT1                     --------->ARR14(2) --------->ANAC58 -----MYB46(3)                    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                    <------ZmHOX2a(1) ------P               --------->ZAT18 <---------TOE2(3)     --------->ANAC58     <---------YAB1 -------WOX13(1)     <---------At4g35610 <------ZmHOX2a(1) <-----------GT1      <---------DOF5.7(2) ----AtMYB61<----------DOF2       <---------ARR14(2) <---------TOE2(3)        --------->DOF5.7(2)  <-   gttgatagtggttactttgatcaagctcacaaggtgtatatgaggatgcgggatagaggtattacgcctgatgtttactcgtttacgattaggatgaagt  28024900  Previous    Next  AGI:  At1g74570.1    Description:  pre-tRNA. tRNA-Leu (anticodon: AAG) Range:  from: 28024044    to: 28024124    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g74580.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G64320.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62547.1); similar to hypothetical protein OsJ_021874 [Oryza sativa (japonica cultivar-group)] (GB:EAZ38391.1); similar to hypothetical protein OsI_023694 [Oryza sativa (indica cultivar-group)] (GB:EAZ02462.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 28024438    to: 28026729    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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