Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                             <------NtERF2                                          --------->LBD16                                         <---------ANAC46                             <----------DOF2                            <---------ANAC58                       <---------REM1(1)<---------LBD16                     <---------YAB1          ---------->DOF2   <---------ANAC58                       <---------ANAC58         --------->YAB1--------->YAB1 ----------->HVH21            <---------ANAC58 ----->RAV1(2)    <---------ATHB12 <---------ARR14(2)       <XXXXXXXXXXXXXXXXXXXXMIR822             <   tgagacaacaatgaaagcgaatcaattgtagctttcggctctggcggagagagaccaatttctgcaaatgcttctcttattcttacacaatcgaatcgaa  27967100                                                         <---------ANAC46                   <-------TEIL                          <---------ANAC58                         ---                 <---------ARR14(2)                      <---------ANAC58                      <-----           ------>NtERF2 ------>ZmHOX2a(1)              <-------TEIL                  --------->GLK1(2)           --------->LBD16                           <---------At4g35610              --------->ARR14(2)          --------->ANAC58                      <----------DOF2            <------ZmHOX2a(1) <-------          --------->ANAC58       <----------ID1 <---------DAG2     ---------->DOF2    <---------ARR14(2) ---------YAB1   --------->ARR14(2)          <---------ALFIN1  ---------->DOF2       <---------GLK1(2)   ttatgttatgtcccgcccaaattcgtcctacaaaaacaccaaaatcaacacttttagcttcgtgagaaagaaagcgaggaagagagagaatcccttaccg  27967200                                                                           --------->TGA1a                                                                           --------->bZIP60(2)                                                                           =================bZIP_DOF                                                                           <---------O2                                                                           --------->ANAC46                                                                        <---------MYB52(1)                                                                       <---------RAP2.6(3)                                                                       ------>NtERF2                                                              --------->ANAC58                                                        <-----------HVH21  --------->O2        --------------------->WRI1                 <---------GLK1(1)   <---------At4g35610     <-----------HVH21                    <---------ZAT14     --------->ANAC58                      < ------>REM1(2)                           --------->ZAT14    --------->LBD16            <------------ ----ANAC46 --------->ARR11(3)            --------->ZAT18   <---------ANAC46     <----------DOF2    < --At5g28300<---------ARR11(3)        ------->TEIL --------->GLK1(1)  --------->RAP2.6(2) <---------ZAT14   tgaagaatgtcatagaccttatcggcgatttcagagaatgtatgtgcagagagaactccgtcgcgcgtaatgccgctacgtcgctttgtgagcgtagaga  27967300              <------MYB46(1)             --------->MYB59        <------ZmHOX2a(2)       <---------ARR11(3)       --------->ARR11(3)   ---------->DOF2  <------ZmHOX2a(1)           ----------->GT1  =============HOX2a_HOX2a  --------->ZAT18         <-----------------AG ---------TOE2(3)      ---------->DOF2    <---------At4g35610                   <---------ALFIN1 ---------WRI1<------MYB83 --------->ALFIN1    ------>ZmHOX2a(1)              <---------ALFIN1   ---- ---------TOE1(3)    --------->MYB46(3)   <---------GLK1(1)                  <------NtERF2     ------   ttaaggaaagatcagtaggtcgaaccaaagtggagtaactatagagctcctctagcctccttgggcaaactaagatggccccaaactccaaaatcgcgaa  27967400                         ------>NtERF2                        --------->DEAR3(1)                        --------->RAP2.3(2)                     ------->GAMYB                     --------->DEAR3(1)                                       --------->ANAC58                    <------------AtMYB77                                      --------->ANAC46                    --------->DEAR3(2)                             <------NtERF2                    <---------ABI4(2)                             --------->ABI4(1)                    --------->ATERF1(1)                           ------>NtERF2                    --------->MYB46(3)                           <---------ATERF1(2)                   <---------ATERF1(1)                           --------->RAP2.6(2)                  <---------ARR14(2)                             --------->ATERF1(2)                  --------->ARR14(2)                             --------->RAP2.3(2)                <---------DEAR3(2)                               --------->RAP2.3(3)               --------->ETT(1)                                  --------->DEAR3(1)            <------MYB46(1)                                     --------->DEAR4(2)            <------MYB83--------->RAP2.3(3)                     --------->ORA47(2)       --------->ATHB12--------->RAP2.3(1)                      --------->RAP2.3(1)    ----------->RAV1(2)--------->DEAR4(2) --------->ANAC58      --------->ATERF1(1)         ---------    <-----------------AGL1                --------->ANAC46      --------->ERF1--------->ANAC58 ----->DAG2--------->MYB59                --------->ANAC58     <---------ATERF1(1)         --------->DAG2 ---->DOF2 <---------AtMYB61       ----------->GT1            --------->DEAR3(1)          ---------->DOF2   aggctcccctgatttggtcggaaccgccgtctcaaggtcgaaaaacgctatctcgcttctctcatcgccgcccagactcgaagccattgttgaaaagtga  27967500                                                                 ------>ZmHOX2a(1)                                                             ------->PIF5                                                             <-------PIF5                                                            --------->TGA1a                                                            ==================bZIP_DOF                                                            <---------O2                                                            --------->ANAC58                                                            ==================bZIP_DOF                                                            --------->ANAC58                                                            --------->O2                                                            <---------TGA1a                                                           ------>NtERF2                                                          <---------ALFIN1                                                         <------NtERF2           --------->GLK1(2)                                                        <-----------HVH21        --------->ARR11(3)                                                        ------>NtERF2     ----------->GT1                                                       --------->ANAC58   --------->LBD16                                                       --------->ANAC46  --------->ANAC46         ---                                                       --------->ANAC58  --------->ANAC55(2)      ---                                                     --------->ANAC58    <---------ANAC55(2)      ---                                    ==================================bZIP_DOF   <---------ARR11(3)                              <------MYB83 <---------KAN4(2)--------->bZIP60(2) --------->RVE1(1) <--                              <------MYB46(1)        --------->ANAC58   <---------LBD16           ---                  --------->GLK1(2) ---------->DOF2  --------->ANAC46  <-----------GT1            ---        *TSS  <------ZmHOX2a(1)  <-----------TBP <-----------HVH21 <----------DOF2              ----- -->GT1---------->DOF2      --------->ALFIN1   --------->At4g35610 --------------->AGL15 <----------DOF2   aaactgatagaaagaaggagaagctaataggtgggttttaaagcgaatgagcttcacgcgccacgtcctctttttacggaaaaaatctaaactttgagag  27967600                          <-----------HVH21                          <-----------TGA1                         <---------ANAC58 ------>ANAC58           <---------ANAC46                                                ------>MYB46(1) ------>ANAC55(2)        <---------ANAC58                                                ------>MYB83 ------>ANAC55(1)    <---------ANAC58                                                  --------->AtMYB61 -------ANAC55(2)    <---------ANAC58                                                 --------->ANAC58 ------>ANAC46     --------->ARR11(3)                                                 --------->ANAC46 ------>ANAC58----------->GT1 --------->At4g35610                                     --------->ANAC58 ---->CCA1(2)<---------TOE2(3)<---------At4g35610                  <----------DOF2  --------->ANAC46   acgcaactgtagaatgaggtttatcttgcgtcatctgcattcacttggagtgatcaacaaatttgattcctttcttctacattttcacaccaaatcgctt  27967700                                                                  --------->DEAR3(1)                                       --------->MYB46(3)         <---------ALFIN1                      --------->ARR14(2)                        ------>NtERF2                      <---------ARR14(2)                        --------->LBD16                      <---------ARR11(3)                       <---------ETT(1)                      --------->ARR11(3)     ---------->DOF2   --------->ANAC46                      <---------ARR14(3)    --------->YAB1     <---------ATERF1(2)                      --------->ARR14(3)   <---------ATHB12    <---------HSFB2a(2)                --------->ANAC58 <---------LBD16               --------->HSFB2a(2)                --------->ANAC58 --------->LBD16    <----------DOF2           <----------DOF2   --------->ARR14(2)  --------->ARR11(3) <------NtERF2        <---------ALFIN1     <---------ARR14(2)  <---------ARR11(3)------>NtERF2               ------      ------->GAMYB   --------->AHL20(1)  ------>MYB83        <---------LBD16          <---------TOE1(2)     --------->MYB46(3)      ------->TEIL ------>MYB46(1)  --------->GLK1(1)          ------>ZmHOX2a(1)   <-----------GT1    <---------AHL20(1) --------->WOX13(1)<---------GLK1(1)   ---------->DOF2 ------   aaatctaaccacactttgaagcaatatcttgaatctggggaaccaatcaaagctcttttagatttccggcaccgattcagacaaagtcctagttttgttg  27967800                                                                         --------->ANAC58                                            --------->HSFB2a(1)          --------->ANAC58                                            <---------HSFC1(2)         <---------ALFIN1                                            <---------HSFB2a(1)      <------ZmHOX2a(2)                                   --------->At4g35610               --------->CCA1(2)                                   <---------ZAT2                   --------->ARR14(2)                                   --------->ZAT2                   --------->AGP1                                   <---------At4g35610              <---------ARR14(2)                                <---------MYB52(1)                  <-----------ARR10                               <-----------TGA1                     --------->ARR11(3)                               <-----------HVH21                    <---------ARR11(3)                        <---------TOE2(3)   --------->HSFC1(2)<---------ETT(2)         <---------MYB52(1)   <---------ANAC58       --------->ANAC55(2) --------->ANAC46    <-----------GT1    ---------->DOF2   ---------->DOF2      --------->ETT(2) --->ETT(2)   <---------ANAC58<---------ANAC58    ------>ZmHOX2a(1)--------->At4g35610 ----->HVH21  <---------ANAC58<---------ANAC46    ==========================HOX2a_HOX2a   acagtttttctgttttgtttgccattaaagtttcgtcagctcagaaagcttcctcacttgatggtagacagatccacgctcttgtaagaaaactaggttt  27967900                                                <---------DEAR3(1)                                                <---------MYB46(3)                                               --------->ALFIN1                                              <---------LBD16                    --------->ANAC58                                              --------->LBD16      --------->ANAC46     ----------->RAV1(2)     <---------MYB52(1)              <-----------GT1  <---------bZIP60(1)        --------->ANAC46    <-------GAMYB    --------->ARR11(3)      <---------ANAC58      --------->ANAC58   --------->ANAC58    <---------RAP2.6(3) <----------DOF2      <---------ANAC46      --------->ANAC58   --------->ANAC58   ----------->GT1   <---------ARR11(3)      <---------ANAC58     ------->TEIL   --------->ANAC58   caatgccgttattcaaattcaaacatctttagtgggattctactcttccgtgggtgatgtcgattatgcacgccaagtgttcgacgaaacgcctgagaaa  27968000  Previous    Next  AGI:  At1g74390.1    Description:  exonuclease family protein. similar to exonuclease family protein [Arabidopsis thaliana] (TAIR:AT5G07710.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN66660.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain Exonuclease; (InterPro:IPR006055); contains InterPro domain Exonuclease, RNase T and DNA polymerase III (InterPro:IPR013520) Range:  from: 27965198    to: 27967508    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g74400.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64521.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 27967614    to: 27969002    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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