Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                           --------->ATHB12                                                        <---------ATHB12                                                  ------->GAMYB                                                 <---------MYB55(2)                     ------->TEIL                              --------->CCA1(2)  --------->MYB46(3)                   ------->GAMYB -                 --------->ANAC46               -------->P                           <---------MYB52(2) ---->ANAC58   --------->ANAC46        <-----------GT1---------->DOF2              --------->MYB52(1) ---->ANAC58   --------->ZAT6<---------ARR14(2) ------>MYB83                   --------->DAG2      -- -->RAV1(1)   <-------TEIL   --------->ARR14(2) ------>MYB46(1)               ---------->DOF2      --   gaaaatcacacacacatacactacataatcagatatgagatttacaatccaacccccaaagattggaccgagaacatacaaaaagtaacgaacttgatga  27962800             --------->MYB52(1)          --------->TOE2(3)         <---------ICU4         --------->ATHB12         --------->YAB1        --------->ICU4                                                    --------->ATHB12        <---------ATHB12                                                 <------ZmHOX2a(2)   --------->ANAC46                                          --------->ICU4   --------->ANAC58                                       --------->WRKY18(1)   --------->ANAC58                                      <-----------HVH21<---------ICU4           -- -------->TOE1(2)                                       --------->LBD16  <---------YAB1            -- ------->ANAC58               --------->ANAC58        <---------LBD16   --------->ARR11(3)       ---- ------->ANAC58               --------->ANAC58      <-----------GT1     <---------ARR11(3)     ------   aacccaagaaatcattaacagaattacagaaaacgaaatacacttacaagagtttatccggtcatgaagatgaagatcattgcaaaaacaaaaaatgcaa  27962900                                                                                 ----------->GT1                                                                                 <---------ANAC46                                                                            --------->ANAC55(2)                                                                            <---------TGA1a                                                                            --------->TGA1a                                                                            --------->O2                                                                            <---------ANAC55(2)                                                                            --------->ANAC46           ----------->GT1                                                  <---------O2        <---------MYB52(1)  --------->LBD16                                 =========================       <-------GAMYB       --------->ANAC46 --------->TOE2(2)               --------->ANAC58   --------->bZIP60(2)--------->ARR11(3)    --------->TOE1(2)             --------->CCA1(2)  <-------TEIL        <---------ARR11(3)   --------->MYB46(3)           --------->CCA1(2) ------->At4g35610   --------->CCA1(1)   <-----------GT1           ---------->DOF2 ------->ZAT2        --------->RVE1(1)<---------bZIP60(1)          ===================bZIP_DOF ----->MYB46(3)   <---------AHL20(2)  <---------REM1(1)      --------->At4g35610<------NtERF2 ----->RAV1(1)   --------->AHL20(2)   --------->bZIP60(1)--------->MYB52(1) --------->ANAC58   cagctacgtcgttgagttatataatatctccgaagctctgatgtaaccagcgagaagaaaaccggctgaaaaagagacacgcgtcgtaaaacatggtgac  27963000                              ------>NtERF2                             <---------ALFIN1                            <---------MYB55(2)                            <------NtERF2                            <---------ABI4(2)                            --------->MYB46(3)                           <---------ATERF1(1)                           *TSS                          <---------TCP20                          --------->PCF2                          --------->DEAR3(1)                          --------->RAP2.3(2)                          --------->RAP2.3(3)                         <------NtERF2                         --------->RRTF1(1)                         --------->ATERF1(1)                        <---------ATERF1(1)                        ------>NtERF2                        --------->ABI4(1)                       <---------ALFIN1                       <---------ATERF1(2)                       --------->RAP2.3(2)                       --------->DEAR3(1)                       --------->RRTF1(3)                       --------->ATERF1(2)                       --------->RAP2.3(3)                       <---------ATERF1(1)                       --------->RAP2.6(2)                      --------->DEAR4(2)                      --------->ERF1                      --------->ATERF1(1)                      --------->ORA47(2)                      --------->RRTF1(1)                      --------->RAP2.3(1)                     --------->LBD16                     <---------At4g35610                     --------->At4g35610                     ------>NtERF2                     <---------RAP2.3(1)             <---------ARR14(2)         --------->ANAC58                   <---------LBD16 <---------GLK1(1) --------->ARR14(2)    --------->AtMYB61  <------                 --------->ARR14(2)--------->GLK1(1)<---------MYB52(1)   -------->P------->TEIL        <----------DOF2--------->RRTF1(2)   <---------DAG2             --------->MYB46(3)     -------    --------->ANAC58 <---------ATERF1(1)    --------->TOE2(3)        <-----------GT1      <----------    --------->ANAC58--------->ANAC46     <---------ALFIN1      <---------TOE2(3)--------->ANAC58 ==================bZIP_DOF------>NtERF2------>ZmHOX2a(1)      <---------TOE1(3)--------->ANAC46   --   tctgaaacgcctttcaatgtttccgccgcccccaccgatttcctcaccttatccgtttctgttttcaggtttaactaccaaaacgcatcgtttcactata  27963100                                                                                       <---------SPL7                                                                                     --------------->AtSPL8                                         ----------------->AG                        --------------->AtSPL3                                         <-----------------AGL1                     <---------ZAT2                            <---------MYB52(1)                                      --------->At4g35610                           --------->LBD16                                          <---------At4g35610                          <---------ANAC46             ----------->GT1            <---------ZAT14                          <---------ANAC58            <---------TOE2(3)           --------->ZAT18       --------->AHL20(2) <---------ANAC58<---------------AGL15          <---------DEAR3(2)   --------->ICU4         ----------->GT1----------------->AGL1         <---------DEAR4(1) ---ZAT14                 <---------ANAC55(1)         <---------TOE1(3) <---------At1g77200        << -->ZAT14    -------->P   <---------ANAC55(2)        ---------->DOF2    <---------DEAR3(1)     ------ -GT1  <---------AHL20(2) --------->ANAC55(2)    ----------->GT1        --------->ETT(1)       <----- ---->NtERF2 --------->MYB52(1)          <-----------------AG           <---------DREB2C(2)   <------   ccgccaaaattaaactaccggtttagttccgtaattttctattaccgaaatcggttaaagtaaaatagtagttgtcggtgagagtgagctgtacgcgttt  27963200                                                     <---------AHL20(2)                                                   <---------AHL20(2)                                                  --------->AHL20(1)                                                  <---------AHL20(2)                  <---------ANAC46                         --------->TOE1(2)        <---------AHL20(1)                  ----------->GT1                        ------>ZmHOX2a(2)         <---------ARR11(3)             --------->ATHB51                        ========================HOX2a_HOX2a                      -------->ATHB1                   <---------HSFB2a(2)            --------->AHL20(2)             --------->ATHB12                   --------->HSFB2a(2)            --------->ARR11(3)         --------->LBD16           <---------ZAT18                  ------>NtERF2                  <---------LBD16 <<<<<<<TBF1      <---------LBD16           ----------->RAV1(1)          <-----------GT1  <---------AHL20(2) --->ARR14(2)  <---------DAG2              ----------->HVH21             --------->ARR14(2) ----ARR14(2)  <----------DOF2           ------>ZmHOX2a(1)       --------->YAB1 <---------YAB1 ---CCA1(2)--------->ZAT18             *TSS<---------ETT(1)--------->ANAC55(2) <----------DOF2   cttcttctccttgtgcgctttctggatcgaacgaagcattttcctccgacaatatatttttaagtaatgacaatgtttccgcattattgggtttaattcc  27963300                                                                                          <---------ANAC58                                                                                          -----------                                                                                          <---------ANAC55(2)                                                                       ------>ZmHOX2a(2)  <---------ANAC55(1)                                                                      --------->CCA1(2)   <---------ANAC46                                                                     --------->AGP1       <---------ANAC58                                                                     --------->ARR11(3)  ------>ZmHOX2a(2)                                                             <---------YAB1              <-------TEIL                                                             --------->AtLEC2           --------->CCA1(2)                                                           --------->YAB1    <----------DOF2      <--                            --------->ARR11(3)       ------>ZmHOX2a(2)<------ZmHOX2a(2) <------ZmHOX2a(2)                      <---------ETT(2)             --------->ARR14(2)<---------AGP1    --------->ARR14(2)                    --------->AGP1                 <---------ARR14(2)--------->ARR14(2)<---------ARR14(2)         <---------TOE2(3)  <---------ARR11(3)  --------->LBD16      <---------ARR11(3)--------->AGP1   <---------AHL20(2) <----------ID1 <----------DOF2<------ZmHOX2a(2)<---------ARR14(2)<---------GLK1(2)   --------->AHL20(2)<------ZmHOX2a(2)         <---------LBD16   ---------->DOF2      <---------At4g35610  --------->AHL20(2)--------->ARR14(2)        <-----------------AGL1--------->RVE1(1) --------->At4g35610  <---------AHL20(2)<---------ARR14(2)     <----------DOF2<---------ATHB12   <---------DAG2--------->LBD16   atttttaaattagggttcttcagatcgacaaatctttctctttctctttccccgatcggaatcatgctaaagatctgaactttttctcagatccgtgaat  27963400                                              ---------->DOF2                                        <------ZmHOX2a(1)                                      <---------TOE2(3)                                   ------>ZmHOX2a(2) <---------------AtSPL8           --------->At4g35610 >GT1<---------LBD16              <---------At4g35610  <---------MYB46(3) -------ANAC55(2)               <---------ZAT14       <---------AtMYB61    --------->GLK1(1)       >>   aagtaagtacggagagacagaaacatactcagactgatctgaggaaaacaaagttgatggtcgcaaacctgtaagtgaaatctatagagagagacgttga  27963500                            ------>NtERF2                          --------->RAP2.3(1)                          --------->ATERF1(1)                          <------NtERF2                         --------->LBD16                         <---------ORA47(2)                         <---------RAP2.3(1)          --------->ATERF1(1)                         <---------DEAR3(2)         <---------ANAC46                         ------>NtERF2              <---------DEAR3(1)                         <---------ERF1             --------->ALFIN1                         <---------ATERF1(1)       --------->ATERF1(1)                         <---------DEAR4(2)        <------NtERF2                        --------->ATERF1(2)        <---------LBD16                        --------->DEAR3(1)        <---------RAP2.3(1)                        <---------ATERF1(2)      <---------RAP2.3(2)                  <---------MYB46(3)                        <---------DEAR3(1)       <---------DEAR3(1)              ------>MYB46(1)                        <---------RAP2.3(3)     <---------At4g35610              ------>MYB83                        <---------RAP2.3(2)     --------->ATERF1(1)            ------->GAMYB                       <---------LBD16      --------->LBD16                   <---------MYB52(2)                       --------->ATERF1(1) --------->HSFB2a(2)                --------->MYB46(3)                      <---------ATERF1(1)  --------->ANAC46              --------->TOE2(3)                 <---------HSFB2a(1)      <---------LBD16             ------>NtERF2------->GAMYB <---                 --------->HSFC1(2)      ------>MYB46(1)   <---------GLK1(1)<---------DOF5.7(2)  ----                 <---------HSFC1(2)      ------>MYB83 <------NtERF2  --------->DEAR3(1)   <------ZmHOX2a(1)                 <---------MYB46(3)    --------->AtMYB61 <------ZmHOX2a(1)--------->DOF5.7(2) -------          --------->WRKY18(1)    ---------->DOF2--------->At4g35610------>NtERF2--------->MYB52(1)<-- >>>>>>>TBF1 --------->ICU4<---------ANAC46<---------HSFB2a(2)    --------->DEAR3(1) --------->ALFIN1   agaagaaaatgggtcaagatggttcgccggcgcataaaagaccatccggaagcggcggaggacttccgacgacgacgttaaccaacggtggaggaagagg  27963600                                                                                                 <---                                                                                                 ----           <---------MYB46(3)                                                                    ----         <---------ANAC46                                                                        ====       <---------MYB46(3)                                                                        ====       --------->MYB55(2)                                                                        <---      <---------AtMYB61                                                                          ====   --------->ALFIN1                 --------->At4g35610                        <-----------TGA1  <--- <---------ANAC58                   <---------At4g35610                       <---------bZIP60(1)<--- <---------ANAC58                <-------TEIL                            <---------MYB46(3)      <--- ------AtMYB61           <---------ETT(2)                  <------ZmHOX2a(2)  --------->bZIP60(1)<--- ----->ALFIN1 <-----------GT1 <---------At4g35610         --------->ARR11(3)  <---------ANAC58   <--- -->ALFIN1 --------->MYB52(2) --------->At4g35610         <---------ARR11(3)  <---------ANAC58   <--- -------MYB46(3)         --------->ETT(2)     <-----------GT1         <-----------RAV1(1)        ----   tggtcgtggtggtttgttacctcgaggtagacagatgcagaagacgtttaacaacatcaagatcacaattctctgtggtttcgtcacaattctcgtctta  27963700  Previous    Next  AGI:  At1g74370.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G29270.2); similar to ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G29270.1); similar to unknown [Populus trichocarpa] (GB:ABK92900.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 27961747    to: 27963027    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g74380.1    Description:  galactosyl transferase GMA12/MNN10 family protein. Identical to Putative glycosyltransferase 5 (GT5) [Arabidopsis Thaliana] (GB:Q9CA75); similar to transferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G18690.1); similar to galactosyl transferase GMA12/MNN10 family protein [Arabidopsis thaliana] (TAIR:AT5G07720.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64511.1); similar to putative glycosyltransferase [Lotus japonicus] (GB:CAI11456.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN80739.1); contains InterPro domain Galactosyl transferase; (InterPro:IPR008630) Range:  from: 27963239    to: 27965115    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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