Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            ----------------->AGL3                                         --------->ANAC58                                        ------>NtERF2                                     ------->GAMYB      <---------HSFB2a(2)                             ----------->GT1     <---------TOE1(3)                           <---------TOE1(2)    ---------->DOF2                           --------->SPL7--------->ANAC58                         <---------SPL7<---------ALFIN1 --------->HSFB2a(2)                       ----------------------->TaNAC69(2)--------->LBD16                --------->CCA1(2)   --------->MYB46(3) <---------LBD16     <---------ZAT6    <---------------AtSPL3  <---------AHL20(2)            --------->AtMYB61 ----->TEIL    <---------ARR11(3)   --------->ANAC46 <---------ARR14(2)---------->DOF2 ->TEIL        --------->ARR11(3)<---------WRKY12<---------TOE2(3)   ----------->HVH21   gtatttagagtcaataagatatagtctcgtacggttcaacgacacccatttaaagtttccggactaaacctctgaaagaccaaaacaatgtagggacaac  27951900                                                                                             --------                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                            ---------                         --------->SPL7                                                     <--------                         --------->RAP2.6(3)                                               <---------LBD16                       <---------SPL7                                           --------->AtLEC2                 <----------DOF2                          <----------DOF2  <---------WRKY18(1)         <------ZmHOX2a(1)--------->ANAC46     <-----------GT1          <---------AtLEC2 <---------ARR14(2)   ttaagaaacaaggacagaactttgtcttacggcaagagttgaatgaaattaagccttcttctttttggatttgagcatgaccatgccgatgaatacggaa  27952000                             <---------------AtSPL8                             <---------------AtSPL3                       ---------->DOF2                     <------NtERF2<---------TOE1(1)                    --------->LBD16                    ------>NtERF2 <---------TOE2(1) ->LBD16            <---------RAP2.6(3) >ANAC58           <---------ATERF1(2) >ANAC55(2)        --------->RAP2.6(2)                                                   ------------ >ANAC46           <---------RAP2.6(2)                                                  <------------ >ANAC55(1)        --------->ATERF1(2)                           <---------ANAC58       ============= >ANAC58          <---------LBD16<-------TEIL                    <---------ANAC58       <------------ -ANAC55(2)       --------->RAP2.6(3)                   <--------P                --------->ZAT6   atgagagagagaagagctatgccggcaaagacaggtacgagaatggcatagtcttggggtaagaagtacttgtggatgaagtgatcactatctacaaatg  27952100                             <---------DAG2                             <----------DOF2               <<<<<<<<<<<<<<<<<LFY                     -                           --------->At4g35610            ----------->HVH21                     -----                    --------->YAB1                  --------->TOE2(3)                          <-----              --------->GLK1(2)                    <---------ICU4                            <-------            --------->HSFC1(2)                 ------>ZmHOX2a(1)                             <-------        ----------->GT1<-----------HVH21      --------->TOE1(3)                        <----------DOF2      --------->MYB52(1)   <---------At4g35610--------->TOE2(3)                        <------------- --->AGL15  <---------HSFC1(2)             --------->ARR11(3)        --------->REM1(1) -------------- -----AGL2  <---------HSFB2a(1)            <---------ARR11(3)       <-------TEIL      <-------------- ==================================================================================================== -----AGL3  --------->HSFB2a(1)     ------>ZmHOX2a(1)   --------->At4g35610         <---------ARR11(3)   gctgtacaaaacgaaaattctattatgtcagctttttcctagtaatatcctaaacattagatgacattggtacatcaaactgacaatgtctttttaagga  27952200                                                 <---------ANAC46      ----------->ARR10                          --------->ANAC55(2) -------->ALFIN1                                 <---------ANAC58 ---->ARR11(3)           <------ZmHOX2a(1)       <---------ANAC55(2) -ZmHOX2a(1)          <---------LBD16            <---------ANAC58 --TOE1(3)          -------->P                   ----------->GT1 --TOE2(3)   <-----------HVH21              <---------------AtSPL3   <---------WOX13(1)            -- --AGL15    --------->bZIP60(1)             <---------------AtSPL8 --------->ATHB12               <-- ->AGL15<---------ARR11(3)                 --------->ZAT14        <---------YAB1        <---------ALFIN1 ---AGL3--------->ARR11(3)             --------->DAG2 --------->ARR14(2)   <---------ARR11(3)    <--- ==MADS_MADS<---------bZIP60(1)       ---------->DOF2 <---------ARR14(2)   --------->ARR11(3)    ----   acttgggggagatgttgtcacttaccaggatgatgacccaaaaagtatagtacgtgaatatggacaagctgattgaagatagtagaagcccgactgctcg  27952300                                            ------------>CBF                                      ---                                            <---------ATHB12                                    <----                                       --------->LBD16                                         ------                                   <---------ALFIN1                                           -------  <---------MYB52(1)              --------->ZAT2                                              ------- --------->LBD16                  <---------At4g35610                                         <------ ---->ZmHOX2a(2)                  --------->At4g35610                                 <------------CBF ----ZmHOX2a(2)                   <---------ZAT2                                     --------->ATHB12 ------ARR14(2)                 *TSS  --------->DEAR3(1)                           --------->ANAC58 ----->ARR14(2)             ----------->RAV1(2)<------------CBF--------->YAB1      --------->ANAC58   atccgctaattccattttgtcaagttcaaaacctgcagcaccgcaaatcaattgtgagaaaaaaatcagaaaaattcaagaagctaagcattggaagata  27952400   ---------->DOF2 -------->GT1 ---TEIL                           --------->YAB1 --->CCA1(2)                    --------->WOX13(1) -->ARR11(3)            <---------YAB1                                --------->At4g35610 -->ARR14(2)        <------------CBF                     ---------->ID1                           --- ---ARR14(2)  ----------->GT1 ------------>CBF        <----------DOF2 <---------At4g35610         <--   cagtcaaaagtgaaggaagttatattgtgaatgtcaatgagaccatttcacctagacttttcccattagaccagctaatgccatggttttatgttctgag  27952500                             --------->HSFB2a(2)               ----------->HVH21                             --------->HSFC1(1)                --------->LBD16                             <---------HSFB2a(2)             --------->At4g35610              -------                      --------->ANAC58                       <---------LBD16                 --------                      --------->ANAC58                      --------->MYB52(1)            <-------TEIL --------->ANAC58--------->ZAT18                           <-----------GT1               --------->CCA1(2) --------->ANAC58<---------ZAT18                        <---------ICU4                  --------->ARR14(2) ------>ARR14(2) <---------ZAT14                     --------->YAB1    --------->ATHB12 <---------ARR14(2) -------ARR14(2) --------->ZAT14    --------->AHL20(2)  --------->YAB1<---------YAB1   --------->At4g35610   ggtatgcaaactgtgctactgcacaaggcctctagaaattaaaacatttgaagaacgataatcaccggacatatgatttgctagacatcagatacacaaa  27952600                               --------->TOE1(2)                               --------------------->WRI1                              -------->ZAP1                                    <---------ATHB12                            >>>>>>>>>>WRKY6                                    --------->ICU4       ------->GAMYB        >>>>>>>>>>WRKY11                            <---------ZAT14     --------->At4g35610   --------->WRKY12                     <---------ANAC58  --------->At4g35610   --------->MYB46(3)      ----------->HVH21                    <---------ANAC58--------->YAB1 --->DOF2                  --------->WRKY38(1)                  <---------ANAC46<---------ICU4 ->ANAC46            --------->YAB1<------ZmHOX2a(1)<---------AtLEC2 <---------ANAC46   gctcaacaactgcctaaaacgaatcagagttgacctaggaagaatcaaacacttgcaagactcttgtcgtggagagtagtaatcatctccaggctccaaa  27952700                                                <---------ANAC46                                           <---------REM1(1)                                           <-----------RAV1(1)                                           --------->ALFIN1                                        <---------TOE2(3)                                   ------>ZmHOX2a(2)                                  <------ZmHOX2a(2)                                 <---------AGP1 <---------ANAC58                                 --------->ARR14(2)                                 --------->AGP1 <---------ANAC58                                 --------->ARR11(3)                                 <---------ARR14(2)                 ------>ZmHOX2a(1)                                 <---------ARR11(3)             <-----------GT1                                <---------CCA1(2)            --------->ARR14(2)                   ----------->HVH21<----------DOF2    --------->DEAR3(1)                 ----------------------->TaNAC69(2)   --------->ANAC46                          -----   atcaacagcttgaagtgatatttgacctatatacagatctttgaggtgttgcttacacagccctattctccttccatttaagctagaaggaatacaaaca  27952800  Previous    Next  AGI:  At1g74340.1    Description:  dolichol phosphate-mannose biosynthesis regulatory protein-related. similar to putative dolichol-phosphate (beta-D) mannosyltransferase 2 [Oryza sativa (japonica cultivar-group)] (GB:BAD10255.1); contains InterPro domain Dolichol phosphate-mannose biosynthesis regulatory; (InterPro:IPR009914) Range:  from: 27951784    to: 27952332    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g74350.1    Description:  intron maturase, type II family protein. similar to maturase-related [Arabidopsis thaliana] (TAIR:AT5G04050.1); similar to Os06g0634100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058135.1); similar to hypothetical protein OsI_023015 [Oryza sativa (indica cultivar-group)] (GB:EAZ01783.1); contains InterPro domain RNA-directed DNA polymerase (reverse transcriptase); (InterPro:IPR000477); contains InterPro domain Intron maturase, type II; (InterPro:IPR000442) Range:  from: 27952683    to: 27954944    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version