Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                            <-------TEIL                                                                                   --------->HSFB2a(2)                                                                                   <---------HSFB2a(2)       --------->AHL20(2)                                                         <---------LBD16     <---------ARR11(3)                                                           <---------ANAC46   <---------YAB1                                           --------->ZAT6       <---------LBD16   -- ---------ATHB12                                <---------TOE2(3)           --------->AHL20(2)   ---- ------>GLK1(1)      ------>MYB46(1)           <-----------GT1              <---------AHL20(1)  ----- -->ANAC46           ------>MYB83              --------->MYB52(1)           <---------AHL20(2)  <---- ->LBD16    <-----------GT1                    <---------DOF5.7(2)   ----------->GT1--------->LBD16<-   aaatcaagataaattcacaaaccaaatagaacagaccacaatgactaattaacgatttcaaaacactaagctagtcaaaaaatttcgggagattcaaaga  27854600           --------->ANAC46          ---------->DOF2    <-------TEIL                                                                                   -- ------->AHL20(2)                                                                                 --- ----->CCA1(2)                                                                                    --- ---->ARR11(3)               ---------->DOF2                                               --------->ZAT2 -----ARR11(3)              --------->TOE1(2)                         --------->ANAC46     --------->At4g35610 --------AHL20(2)   ------>ZmHOX2a(1)    --------->ATHB51 <---------GLK1(1)                <---------At4g35610   tttaaatgcatacaaagcactccttaagaaccaaagaaaacaactattgcattgagctagatttcagactccaagacaatgagacagtgtatcagctaag  27854700                                 <---------ANAC46                                <---------LBD16                       <---------ZAT18                       --------->SPL7            <------MYB83     <-------GAMYB               --------->At4g35610           --------->LBD16            <------MYB46(1)  ==============================MYC_MYB                 <---------ALFIN1          <---------ANAC58  <---------MYB46(3)           <---------ZAT2      <---------ANAC58          <---------ANAC46  <-----------RAV1(1)          --------->ZAT2      <---------ANAC58     <---------ANAC58 --------->ALFIN1                   <---------At4g35610<------NtERF2     <---------ANAC58<---------SPL7                    <-----------RAV1(2) <---------MYB46(3)     ---    --------->ZAT2  <---------ANAC46             --------->TGA1a           ------>NtERF2          ---    <---------ZAT2  <---------ANAC58             --------->ANAC46          --------->ABI4(2)    ----- --------->RAV1(2)  <---------ANAC58             --------->ANAC55(2)     <---------MYB52(1)     ===== ---->TEIL<---------ANAC58----------------->AGL1 <---------O2          <---------DEAR3(1)       ----- ------>MYB52(1)  <---------At5g28300            --------->O2     --------->ARR11(3) <---------LBD16   tacctgagcttggctggttttgccgtgcgcctgttggggagaggtttcttcacgtcttcagctggatagaacttcggtggcttctccaccggagcatcaa  27854800                   <------NtERF2                  <---------MYB46(3)                  --------->LBD16                 <---------ANAC58                 <---------ANAC58                 <---------DEAR3(1)              --------->ALFIN1              ----------->HVH21            <---------O2            --------->O2            <---------TGA1a            <---------ANAC58            <---------ANAC46            <---------ANAC58            <---------bZIP60(2)                                                  <---------ARR11(3)          <-----------HVH21--------->ANAC46            --------->MYB46(3)        --------->ARR11(3) - ------>TOE1(3)  <---------ANAC46               <---------WOX13(1)         --------->At4g35610     <- ------>TOE2(3) <------NtERF2   <-----------------AGL1 <---------MYB52(2)  <---------At4g35610    --- -->TEIL <---------ANAC58  --------->ANAC58    <---------ANAC58            ----------->RAV1(2)    --- =====================MYC_MYB  ------>NtERF2   <---------ANAC58          --------->REM1(1)        --- --->P   <---------ANAC58  --------->ANAC58   --------->ATHB12          <-------TEIL         <-------   ccttagatttagcgtcgtggcgggggaaaacgcctccatttttggccttgattgcccacaaacctctcttatggtacatctgagaccttgagtatttacc  27854900                                                               <----------DOF2                                                         ----------->GT1                                  --------->ZAT2    ------>NtERF2                           <---------WRKY18(1)      <---------ATERF1(1)                          --------->WRKY12          --------->LBD16                          --------->WRKY38(1)      --------->ANAC46                   <---------GLK1(1)               --------->RAP2.6(2)                  <---------ARR14(2)               <---------ATERF1(2)                  --------->ARR14(2)               --------->ATERF1(2)   ----------->RAV1(2) ------>ZmHOX2a(1)           --------->DEAR3(1) ------>GAMYB<------ZmHOX2a(2)    <---------At4g35610   <------NtERF2 --------ALFIN1  <------ZmHOX2a(1)--------->At4g35610<------NtERF2 --->MYB46(1)=================HOX2a_HOX2a------>ZmHOX2a(1)   --------->MYB52(2) --->MYB83   ===================================HOX2a_HOX2a<---------MYB52(1)     <---------LBD16 ----->P    <---------ARR14(2)--------->TOE2(3)   <---------LBD16       <-------GAMYB ----GT1   --------->At4g35610--------->TOE1(3)  <---------RAP2.3(1)   <-----------RAV1(1) --------->YAB1   aactcccctgatcagatcaggattcctgttgaccttagctgtcctctgtttcgccggcatcgttactttctctctgttgcaatccctggacgataatcaa  27855000                                   --------->At4g35610                                            <--                                   <---------At4g35610                                      ------->PIF5                                   *TSS                                                     <-------PIF5                    <---------AHL20(2)                                                     ==========                    <---------AHL20(1)                                                     <---------TGA1a                    --------->AHL20(2)                                                  <---------PCF2                   --------->AHL20(2)            <-----------HVH21                     <---------DEAR3(2)              <------NtERF2     --------->ZAT14 <------MYB83                       <---------ANAC58           ------>NtERF2        <---------ZAT14--------->MYB59                     <---------ANAC58          --------->LBD16      <---------ZAT6<---------ARR14(2)                    <---------ANAC46          ------>NtERF2   <---------ANAC46   --------->ARR14(2)                   <-------TEIL<------         <---------RAP2.6(2)   <---------REM1(1)<------MYB46(1)           <---------STY1(1)==========        <---------LBD16  --------->MYB59    <------ZmHOX2a(1)             --------->STY1(1)--------->TGA1a     <----------DOF2--------->AHL20(1)--------->At4g35610            --------->GLK1(1)<---------DEAR3(1)   gaagagactttccggccgagaataaattgggtagtgtagcagaagaggataggtcacatttgaagacacagaaaccctaggggatgcgtgggctcgtggg  27855100   ----------->GT1   <---------ZAT6                                                                               ----- --------DOF2   <----------DOF2                                                           <---------- ========bZIP_DOF                                                                 <----------DOF2 ---ZAT18  <---------LBD16------->TEIL                              ----------->GT1     --------->ARR11(3) ========bZIP_DOF   <---------YAB1                         ----------->GT1 <-----------GT1<----------   ctttagagtaaattcgggctttattatggaccgagacagttttgttttgggcaaatagaaatagtagaaattgtttattacactctttaatatccagtta  27855200                                          --------->ANAC46                                          --------->ANAC58                                          --------->ANAC58                                         --------->LBD16                                         <---------LBD16                                         --------->ZAT18                                         >>>>>>>>>>AtSR1                                        ------->GAMYB                                       --------->MYB46(3)                                     <---------ARR14(2)                                     --------->ARR14(2)                                ------>NtERF2                              <---------ICU4                                --------->LBD16                            --------->YAB1    --------->ANAC58           --------->DEAR3(1)                         <---------YAB1    --------->ANAC58          <---------LBD16 --------->ANAC58      --------->ANAC58    --------->ANAC46--------->ZAT14  --------->MYB52(1)             --------->ANAC58 ----->DOF2         <---------ZAT14 ----------->HVH21           --------->YAB1<-----------GT1 -------AGL1        <---------ZAT18<---------MYB59           --------->WOX13(1) -------AGL2     <---------ANAC46------>NtERF2--------->ANAC58 <---------ATHB12        --------->YAB1   aggcccaagcaattcaattctgtggactatgctccggcctaaccgcgcaagacaacaatttctcaatcacacgcttataattactcaattgataatgtag  27855300               --------->RAP2.6(3)       <---------MYB55(2)       --------->MYB46(3)     --------->ANAC46     ------>MYB83                  <---------WOX13(1)     ------>MYB46(1)               <--------P                                                       <   <---------MYB46(2)             <-------GAMYB                         --------->ANAC58            -   --------->MYB46(3)            <---------MYB46(3)                     --------->ANAC58   ------->GAMYB   <---------MYB55(2)           --------->ALFIN1                       --------->ZAT18    <---------MYB52(2)   <---------MYB111(1)         ------->MYC3                            <---------ZAT18    <---------MYB111(2)   --------->AtMYB61   <---------ICU4                        <---------ANAC58             <---------MYB55(2)   <---------MYB111(2)<---------ATHB12        --------->MYB52(1) <---------AtLEC2         --------->MYB46(3)  --------->ANAC46<------NtERF2<-------MYC3 <----------DOF2  <---------ANAC58  XXXXXXXXXXXXXXXXXXXXX>MIR833-3P   ttccaccaaaccaccatggctgcaatctttccatgtggttgatgtgcttaacagtttaagttgtcttgcatagcacacaaaaaacgttgccaacaaacaa  27855400                                                                                           <---------At4g35610                                                                                           <---------ZAT2                                                                                           --------->ZAT2                                                                                           --------->At4g35610                                                                                       <---------ALFIN1                                                                                       --------->AtMYB61                                                                                      --------->MYB46(3)                                                                                    --------->DEAR3(1)                                                                                  <---------ATERF1(1)                                                                                  ------>NtERF2                                                                                 --------->ANAC46                                                                  <-------GAMYB  --------->ANAC58                                       ----------->GT1           <---------DEAR3(2) <---------ALFIN1                                <---------------AGL15            ----------->GT1 --------->ANAC58       --------->YAB1           --------->TOE2(3)  --------->TOE2(3)            <---------LBD16 ---------At4g35610            <-----------------AGL3           <---------DEAR3(1)--------->LBD16 -------->At4g35610       <------ZmHOX2a(2)        --------->TOE1(3)  <-----------GT1------>NtERF2<--   tgagctcattcatagagtttgtgactcgatcaaaccacaattggtgactacaaccttagaataaggccggttaaaccctctctccgccaccacagctctc  27855500  Previous    Next  AGI:  At1g74060.1    Description:  60S ribosomal protein L6 (RPL6B). Identical to 60S ribosomal protein L6-2 (RPL6B) [Arabidopsis Thaliana] (GB:Q9C9C6); similar to 60S ribosomal protein L6 (RPL6C) [Arabidopsis thaliana] (TAIR:AT1G74050.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15090.1); contains InterPro domain Ribosomal protein L6, N-terminal; (InterPro:IPR005568); contains InterPro domain Ribosomal protein L6E; (InterPro:IPR000915) Range:  from: 27853494    to: 27855035    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g74070.1    Description:  peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein. similar to peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] (TAIR:AT5G35100.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68001.1); contains InterPro domain Cyclophilin-like (InterPro:IPR015891); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; (InterPro:IPR002130) Range:  from: 27855149    to: 27856637    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version