Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                 --------->AHL20(1)               <---------AHL20(1)               <---------ARR11(3)               --------->ARR11(3)           <---------YAB1         --------->GLK1(1)         --------->CCA1(2)                                                    <---------AHL20(2)        --------->ARR14(2)                                           <---------ICU4        <---------ARR14(2)                                          <---------YAB1      --------->LBD16                                               --------->ICU4     <---------ANAC46                                             --------->YAB1    <---------LBD16          --------->YAB1                --------->YAB1    --------->YAB1     ----- --------AHL20(2)      ----------->GT1                  --------->WOX13(1)--------->TOE2(3)---------- ------->AHL20(2) <---------AHL20(2)       <---------ARR11(3)    <---------ATHB12 <---------REM1(1)   ttaaaatgcggatatgatatattttttgtaaaaataagaaggctatatcatctctgatcagtcataaatcataattccataatattgtagccataaagaa  27840600                                                            <---------ICU4                                                            --------->YAB1                                                      --------->YAB1         ========================                                              --------->LBD16                ------>ZmHOX2a(2)                                             <-----------RAV1(2)           --------->ARR11(3)  <---------ZAT6                             <---------HSFB2a(2)           <---------ARR11(3)     <--  ----------->GT1                            --------->HSFB2a(2)   --------->DAG2     <----------ID1 ---->CCA1(2)                               --------->LBD16--------->ICU4<---------YAB1           <-- >DOF2    --------->MYB52(1)               ----------->RAV1(1)    ---------->DOF2  ---------->DOF2<--   acgagtgttaataaacgaatgccatttagattccaatttcaaaacccccagaagaagcataatcatcaaaaagttatgatcttagaaaagaacaagactt  27840700             ------>ZmHOX2a(2)                                     --------->LBD16           --------->ARR11(3)                                    <---------LBD16          --------->ZAT14                       <-------TEIL    --------->MYB52(1)          <---------ZAT14                    <------MYB46(1)  --------->MYB46(3)   --------->ARR14(2)                        <------MYB83   <-----------GT1   <---------ARR14(2)                       <---------AtMYB61<---------At5g28300  <------ZmHOX2a(1)                        <--------P   --------->ARR14(2)  ==================HOX2a_HOX2a         <---------LBD16 <---------ARR14(2) ========HOX2a_HOX2a                   <---------LBD16  <-----------ARR10 -------TOE1(1)                        <---------ANAC46 <---------ARR11(3)              <---------DAG2 -------TOE2(1)                    <-----------HVH21   <------ZmHOX2a(1)                <----------DOF2 -------ANAC46     ---------->DOF2--------->ANAC46   <---------TOE2(3)   --------->MYB52(1) <--------   acgaggattcagtgatctgggcaaagtcaacataacccgtctcggggaggtacttgaggattttaccaccggagacaccggtatagaaccctttaccggt  27840800                                                 --------->GLK1(2)                                               <---------HSFC1(2)                                               --------->HSFC1(2)                                               --------->HSFB2a(1)                                               <---------HSFB2a(1)                                            <---------MYB52(1)                                           --------->LBD16                                        ------>NtERF2                                    --------->HSFB2a(2)                                    <---------HSFB2a(2)                                    <---------ETT(1)                        ----------->HVH21<------NtERF2                       <---------MYB59 <---------ALFIN1                      --------->At4g35610--------->At4g35610       <---------At4g35610                  --------->HSFB2a(2)------>NtERF2  <---------HSFB2a(2)                  <---------HSFB2a(2)--------->LBD16--------->HSFB2a(2)       --------->DEAR3(1)             --------->HSFC1(2)     <---------ATERF1(2)---------->DOF2        ------->GAMYB             <---------HSFB2a(1)    --------->ANAC46<---------HSFC1(1)       --------->DEAR3(2)             <---------HSFC1(2)    <---------LBD16  --------->HSFC1(1)       --------->MYB46(3)    ---------->DOF2   <---------At4g35610<---------LBD16       <-----------HVH21  --------->At4g35610  --------->YAB1<---------LBD16    <-----------------AGL1      <-----------TGA1  --------->DEAR3(1)>> -LBD16   ---------->DOF2        <---------ARR14(2)<---------LBD16 --------->At4g35610---------->DOF2   ggaatcaaaagcgaaagcttcgggacctgacctagtttccggcaccggaagtttctggaaagaagcgtcatcggagaaaaccgccgatgaaagagagaga  27840900                                        <---------ARR11(1)                                       <---------MYB52(1)                               --------->TGA2(2)                              <-----------HVH21                              <-----------TGA1                             --------->bZIP60(1)                             <---------bZIP60(1)                             --------->ANAC46                             --------->TGA2(1)          -------->ATHB1                             <---------O2               <---------ICU4                             --------->bZIP60(2)        --------->YAB1        *TSS<----------DOF2             <---------ATHB12<---------TGA2(1)         <---------ATHB51    <---------ANAC58    <-----           --------->GLK1(1) <<<<<<<<<<HY5             --------->ICU4      <---------ANAC58    <-----  >>>>>>>>>TBF1              --------->O2  <----------DOF2                 <---------ANAC46 <-------- >>>>>>>TBF1 --------->ICU4 <-----------STF1           <---------ATHB12 <----------DOF2   <---------MYB46(3)   agaagaagaagagaaatcatggagcaaaacgacgtcataccgtttctttatcgctcaattattctcaaatgagactttcttgtactttgtagtcgttacg  27841000                                  <----------DOF2                                ---------->ID1                                                 <-----                       <----------DOF2      <---------AHL20(2)                              <--------                    <-----------GT1        --------->AHL20(2)                             --------->ANAC58   <---------AHL20(2)  <---------DAG2     <---------WOX13(1)        ----------->GT1       --------->ANAC55(2) <-----------TBP   <---------AHL20(2)  <---------YAB1   <---------HSFB2a(1)               --------->ANAC46 ----ANAC46        <-----------GT1============================================MADS_MADS   --------->ANAC58 ----YAB1      --------->AHL20(2) --------------->AGL15 --------->HSFB2a(1)               --------->ANAC55(1) -MYB52(1)    <---------YAB1<----------DOF2<---------AHL20(2) --------------->AGL15     <---------ALFIN1   aatatttataggtttgattatttaacttttctttttcttttttgattaatttttaagaaggtttcttattttgtaaattaagttgatggcacacgttatg  27841100                   --------->ZAT14                                             ----------->GT1              <---------YAB1                      ----------->HVH21           --------->DAG2           --------->AHL20(1)                   <---------ANAC58             ---------->DOF2       --           <---------AHL20(1)                   <---------ANAC58    ------->MYC3                   --  <---------TOE1(2)<---------ZAT14           --------->GLK1(1)      <-------MYC2                   -- ----YAB1  --------->AHL20(2)           <---------LBD16             <-------MYC3              ------- -MYB52(1) <---------AHL20(2)          <---------LBD16              ------->MYC2              -------   ctcgtcggattattttattagtgaagagattagagttgtttctcggggtttcttgacagattaagttgcacatggaacaaaaagtcaaatagttgcaatc  27841200                                       --------->ANAC58                                       --------->ANAC58                                       --------->ANAC46                                    <---------WRKY38(1)  ------->TEIL            --------->TOE1(2)  <---------ARR11(3)  <-------TEIL            <---------SPL7------->GAMYB ------->ANAC46         <---------------AtSPL3 ------>ZmHOX2a(2)                      <---------TOE2(3) ------->ANAC58         --------------->AtSPL3<------ZmHOX2a(2)                       <---------YAB1 ------->ANAC58      <--------P   <-----------HVH21  --------->ANAC58           <---------ANAC46 -->ANAC58         <---------ANAC46 <---------WRKY12 --------->ANAC58      ------->TEIL    --------->ATHB12 -->ANAC58  <----------DOF2 --------->SPL7   --------->ARR11(3)      <---------AHL20(2)  <---------WOX13(1)   cacgtacattgctgatttttggggtagacgtacgactgtcaacgcaagatcgcaaacgcatggtctaaaaatttatgtacttgtgtctaagattgattag  27841300                                          <---------GLK1(1)         <----------DOF2                  --------->CCA1(2)                                     <----         <---------DAG2                  <---------ARR11(3)                                     -----  <------MYB83                  <------MYB46(1)      --------->AHL20(1)                         -----  <------MYB46(1)               <------MYB83         --------->ARR11(3)                     ---------  ----------->GT1              --------->MYB59       <---------ARR11(3)                    <---------AHL20(2) --------->MYB59<---------YAB1 --------->MYB111(1)  --------->AHL20(2)         --------->At4g35610 --------->MYB111(1) --------->DAG2      --------->ARR11(3)                    <---------At4g35610 --------->MYB46(2) ---------->DOF2     <<<<<<<<<RAP2.2                 --------->ANAC46   --------->AHL20(2)   aagtaggtaaacttttttttgataaagtagaagtaggtatttagatatcagaaaatatatacaagtgtaattccaaggagcagttgattacaaataaata  27841400                                             <---------AHL20(2)                                             --------->AHL20(2)   <---------ARR11(3)               --                                          ----------->GT1         <---------GLK1(2)            ------         <----------DOF2           <---------ANAC58               --------->ARR11(3)      ------>MYB83 <-------TEIL                      <---------ANAC58             <---------TOE2(3)         ------>MYB46(1) -----AHL20(2)                     <---------ANAC46             <---------TOE1(3)         --------->MYB52(1) ---->AHL20(1)                     <---------AtLEC2          --------->AHL20(2)      <------ZmHOX2a(1) ---->AHL20(2)                <---------ARR14(2)       ----------->GT1           ---------->DOF2   <- >AHL20(2)                    --------->ARR14(2)    ---------->DOF2        --------->ARR11(3)  <-----   aaatacatatacttttgagaaataccctagaatatttgcttggatattaaaaaaaaaaggaaatttaagatttttgtgatattgaaaggaccaaatggat  27841500  Previous    Next  AGI:  At1g74020.1    Description:  SS2 (STRICTOSIDINE SYNTHASE 2); strictosidine synthase. Identical to Strictosidine synthase 1 precursor (SS1) [Arabidopsis Thaliana] (GB:P94111;GB:Q9C9C3); similar to strictosidine synthase family protein [Arabidopsis thaliana] (TAIR:AT1G74010.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67964.1); contains InterPro domain Strictosidine synthase; (InterPro:IPR004141); contains InterPro domain Six-bladed beta-propeller, TolB-like (InterPro:IPR011042) Range:  from: 27838792    to: 27840978    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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