Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    ---                                                                                                  <--                                                                                                -----                                                                                                <----                                                                       <---------ARR14(2)      <-----                                                                       --------->ARR14(2)     <------                                                                    <---------ANAC46         <-------        <-----------GT1                                             <---------ANAC55(2)    <---------ANAC58    <---------AHL20(2)                                              --------->ANAC55(2)    <---------ANAC58 --------AHL20(2)                                                 <-----------GT1      <---------HSFB2a(1) ------->AHL20(2)                                          <---------TOE2(3)          <-------------- --------AHL20(1)                                       --------->ARR11(3)            --------->DAG2 ----AHL20(2)                                           <---------ARR11(3) ----------->GT1<-------TEIL ---AHL20(2)                        <-----------GT1 ---------->DOF2<---------LBD16  ---------->DOF2<-   ttttattttataactataagataactagacaagtttatttaccaaaacaaaatgaaaagataatgttgttacggatttagtaatataaaaggttcgtatc  27834700  --------->YAB1 <---------YAB1 ------>ICU4 -------YAB1                    <---------ANAC55(2) ---->YAB1                      --------->ANAC55(2) ----HAHB4                      <---------ANAC58 ----YAB1                <---------YAB1 ---ARR11(1)         <---------GLK1(1)   <---------ARR11(3)                                         - --CCA1(2)--------->ARR14(2)    <---------ANAC58                                              ------- -AtSPL8  <---------ARR14(2)    <---------ANAC46                                             -------- --------ICU4        --------->GLK1(1)   --------->ARR11(3)      <-------TEIL        --------->AHL20(2)   attatcatgaagtatatggaaagaattctgatttgcgtatcaagctcttgataacattgaattcaaatgcataagaagcatatataagtaaatgaaaaag  27834800                                                                                                 ----                                                                                       ----------->HVH21                                                                                       --------->WRKY38(1)                                                                                      <-----------HVH21                                                                                      <---------MYB52(1)                                                                                     <---------At4g35610                                                                                     --------->At4g35610                                                                                     --------->LBD16                                                                                     <---------DEAR3(2)                                                                                 --------->DEAR3(1)                                                                                --------->MYB46(3)                                                                                --------->DEAR3(2)                                                                               <---------At5g28300                                                                              <-----------GT1 -------    ------>ZmHOX2a(2)                                                    <------ZmHOX2a(1)  <--------  --------->ARR11(3)                                             <---------RVE1(1)   <---------ATERF1(1)  <---------ARR11(3)                      <---------ETT(2)       <---------CCA1(1)  --------->DEAR3(1) --------->YAB1              --------->ARR11(3)                 <---------ARR11(3)  <---------DEAR3(1) -------->ICU4--------->MYB52(1)          --------->ETT(2)      --------->ARR11(3)  --------->ATERF1(2) -->DAG2     --------->TOE2(2)       ---------->DOF2    <----------DOF2<---------TOE2(3)<---------ATERF1(1) -->DOF2     --------->TOE1(2) ------>ZmHOX2a(2)<-----------GT1 <---------ARR14(2)------>NtERF2 -----   taatgatcttggaaacttacgaagagtttgtgatctgggcaaagtcgacataacctttctttggaagatattttaggattttaccgccggtgactccggt  27834900                                                              <---------MYB52(1)                                                             --------->LBD16                                                           <---------LBD16                                                           <------NtERF2      <----------DOF2                                  <-----------HVH21      ------>ZmHOX2a(1)                               ------>ZmHOX2a(1)                 <-------GAMYB  --------->ARR14(2)                                 <---------LBD16                   <---------MYB46(3)  --------->GLK1(2)                                 <---------ANAC58              <----------DOF2 ----->ZAT14          ---------->DOF2   <---------ANAC58   --------->At4g35610    <---------DAG2 -->LBD16           --------->YAB1      <---------ANAC58  ------>NtERF2     --------->YAB1 -LBD16   <---------LBD16        <-----------HVH21  <---------ANAC58        <---------ICU4 ---->ALFIN1--------->LBD16 ---------->DOF2         ----------->RAV1(2)    --------->ICU4           -   gtagaatccttttccggtggaatcaaaagcgaaagcttcagggcctgttctgtttcctggcaccggaagtttttgaaatgatgactttttggttgagaga  27835000                                                                    <-------GAMYB                                                                    <---------ANAC58                                                                   <---------MYB46(3)                                             --------->MYB52(1) <----------DOF2    <<<<<<<<<GATA-1                                      --------->ANAC46    <---------YAB1          <-----------GT1                                --------->GLK1(1)  --------->AtMYB61<---------ANAC58        <-------- -------->At4g35610    <------ZmHOX2a(1)<----------ID1  <---------ICU4       <----------DOF2*TSS   --   acagatgaagaaaatgagagaagaaggagaagagaaatcaacgagacaaacgacctcatcatgtttctttggttgtgttctttttatctatctcttatct  27835100                          <---------YAB1                                <----------DOF2       ------->TEIL     <---------AHL20(2)                           --------->ARR11(3)   ------->TEIL <---------AHL20(2)        <----------DOF2------>ZmHOX2a(1) -CCA1(2)     <-----------TBP         <-----------GT1<-----------GT1 <---------ARR11(3)     <-------- ----->TEIL------->TEIL--------->AHL20(2)<---------DAG2 --------->TOE2(3)                  ----------   gtatgtatgtatgtatatttatagatttatttttggaatgttaccttttttgaaatttccttatattaagacatctttttttttttttttttctaaagtt  27835200                                                                                         <---------MYB52(1)                                                                                        --------->TOE2(3)                                                <---------TOE2(3)                      <---------ANAC55(2)                                                <---------YAB1                         --------->ANAC55(2)                                              --------->AHL20(2)            --------->ANAC46                                 <---------------AGL15                   <---------ARR14(2)       <--                                ----------------->AGL3                   --------->ARR14(2)--------->MYB52(2)                                ----------------->AGL2           --------->ANAC58      <---------ANAC58                                <-----------------AGL3        <---------ATHB12         <---------ANAC58                 <---------HSFB2a(2)          <---------AHL20(2) --------->ANAC58      <---------YAB1                 --------->HSFB2a(2)    ----------->GT1   <---------AHL20(2)--------->ANAC58      <-- -TOE2(3)      <---------AHL20(2)--------------->AGL15    --------->AHL20(2)--------->ANAC58      <-- >DOF2 ---------->DOF2     <---------ATHB12  --------->ICU4 --------->WOX13(1)       <-----------GT1   gacaatagacaaagtatttatagaaacaaatcaaactaaaattagtaattaatattgaatataaatcaagaaacaaatacgcctaaattacgttagtttt  27835300                                                          <---------AHL20(2)                                                 <---------HSFB2a(1)      --------->YAB1                    <---------YAB1 --------->TOE2(3)        <---------ANAC58  --------->AHL20(2)       <---------ARR11(3)    --------->HSFB2a(1)            <---------ANAC58  <---------AHL20(2)       --------->ARR11(3) <------ZmHOX2a(1)          <---------AHL20(2) -------YAB1             ----------->ARR10  <---------TOE1(2)            <-----------GT1 -------TOE1(3)        ---------->DOF2 <---------ARR11(3)<---------AHL20(2) <----------DOF2       <-- -------TOE2(3) <---------WOX13(1)     --------->ARR11(3)--------->AHL20(2) <---------DAG2     ------   aagattaattagaagtagattgatgaaaagatactacacattatcttaggaacatttcattaaatgttttgacatttacttttcttgattcactagtaaa  27835400                                                                    --------->YAB1                                                                   <---------YAB1                --------->ANAC58                                <---------AHL20(2)        --------->ARR14(2)                                   <---------AHL20(1)        <---------ARR14(2)                                   --------->AHL20(1)      --------->LBD16                                        --------->AHL20(2)     <---------ANAC46                                        <---------AHL20(2)    --------->At4g35610                   <----------DOF2 --------->AHL20(2)                 <-------    <---------At4g35610            <---------ANAC58    --------->YAB1                        <------- -------LBD16   --------->ANAC58   <---------ANAC58  --------->AtLEC2                        <------- ---->DOF2    ---------->DOF2 <---------AtLEC2  <-----------GT1 <---------YAB1          <---------ANAC46   tgcggtagcggaaatggaaagcaatttgatttgcattgcttctgcattttgtaccatgcataaaatattattatggtctatatatgtatagtgtggattg  27835500                                                                                 <---------ALFIN1                                                                                <---------ZAT18                                                                               <---------ALFIN1                                                                              <---------ZAT14                                                                              <---------ZAT18                                                                              --------->ZAT14                                                                            --------->ANAC58                                                                            --------->ANAC46                                                                            --------->ANAC58                                                                           ------>NtERF2                                                                          <---------ALFIN1                                                                       --------->ANAC58                                                                       ----------->HVH21                                                                       --------->ANAC58                         --------->ANAC58                             --------->SPL7                         --------->ANAC58                            <---------SPL1(1)                         --------->ANAC46                            --------->SPL1(1)                      --------->ZAT18                               <---------SPL7                      <---------ZAT14                             <---------------AtSPL3                   <---------ANAC58             <---------ZAT18   --------------->AtSPL3    <---------AHL20(2)<---------ZAT18           --------->ZAT18 ------------------>SPL14           <- --ANAC46          <---------ANAC46       --------->YAB1       ----------->HVH21--------->ZAT14    <- --ANAC58          <---------ANAC58      <---------YAB1     <-----------HVH21--------->DEAR3(1)    -- --ANAC58      ---------->DOF2         --------->YAB1   <-----------GT1--------->ANAC46        <-----   tggaatttttttttctctaaagcgtgcacgaaaatcacatatgatgatagtgcaaaataaaccgtctcaccgtacgacaccgcacactcttgttttttta  27835600  Previous    Next  AGI:  At1g74000.1    Description:  SS3 (STRICTOSIDINE SYNTHASE 3). Identical to Strictosidine synthase 3 precursor (SS3) [Arabidopsis Thaliana] (GB:P92976;GB:Q9C9C1); similar to SS2 (STRICTOSIDINE SYNTHASE 2), strictosidine synthase [Arabidopsis thaliana] (TAIR:AT1G74020.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN78856.1); contains InterPro domain Strictosidine synthase; (InterPro:IPR004141); contains InterPro domain Six-bladed beta-propeller, TolB-like (InterPro:IPR011042) Range:  from: 27832803    to: 27835092    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version