Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          ----------->GT1 ------>GAMYB                            <-----------GT1 ----->MYB52(1)                         --------->KAN4(2) -->MYB83                              --------->KAN4(1) -->MYB46(1)                           <---------KAN4(1) ---->MYB55(1)                        <---------KAN4(2) ------>HVH21                     <------NtERF2 ----MYB111(1)                   --------->LBD16 ----MYB111(2)                 <---------LBD16                 ---------->DOF2 ----MYB59                     --------->ATERF1(1)       --------->GLK1(1) ----MYB46(2)                  <------NtERF2          --------->LBD16                              <- --->MYB46(3)                 ------>NtERF2          <---------HSFB2a(2)                           <- ----MYB52(2)                 <---------ATERF1(1)    --------->HSFB2a(2)                         *TSS ----MYB55(2)                --------->DEAR3(1)     <---------ANAC46                         <------- ---At4g35610                <---------DEAR3(1)     <---------LBD16                          <------- -->ANAC55(2)              <-----------HVH21   --------->ARR14(2)                           <-------- -->ANAC46       <---------LBD16--------->DEAR3(1) <---------LBD16                          ---------   aacggaagaagagtcaaattggggaaaaacgtcgccggagattattccatattttcgggaaacccagaagcgatagtaagaatatagttggagagatatt  27827700         --------->WOX13(1)        <---------WRKY38(1)        <---------WRKY12       --------->WRKY18(1)                                                                          -       ------------>CBF                                                                            <- --------ANAC58                                                                                  ---- --------ANAC58                                  <----------DOF2      --------->GLK1(1)          <--- --RVE1(1)                                --------->ANAC58--------->GLK1(1)              --------->YAB1 --CCA1(1)                           <------ZmHOX2a(1)--------->HSFB2a(2)               <---------ATHB12 -ARR11(3)               <---------YAB1   --------->ANAC58<---------GLK1(1)         --------->MYB46(3) >ARR11(3)  --------->YAB1        <------ZmHOX2a(1)   <---------HSFB2a(2)        ---------->DOF2 <---   ttcgtagcagtcaatgagagtaagaagatgatggaaggaggaagacggaagctttaccagaaatcactagagaaatcaaacagtaaaccactcataccag  27827800                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                <----                                                                                                -----                                        <---------O2                                           ------                                        <---------At4g35610                --------->ARR14(2)--------                                        <---------ZAT2          --------->MYB52(1)        <----------                                    <-----------HVH21           ------>MYB46(1)         --------->AHL20(2) -------->ATHB12                <---------WOX13(1)            <---------MYB59       --------->AHL20(2) ------TEIL                   --------->ATHB12                <---------MYB46(2)   --------->AHL20(2) ----->ARR14(2)           <---------MYB46(3)                  <---------MYB52(2)   <---------AHL20(2) ------ARR14(2)          <---------MYB52(1)     <-----------GT1 ------>MYB83  --------->ANAC46 ------ ------GLK1(2)          <-------GAMYB   ----------->RAV1(2)<-----------GT1 <---------ARR14(2)<-------   attcatttgaaaattgaattttcttcggttattgattgagtcacctggtttatccatctttgtaccgaaccgagacatatacgatataaattaaaccaaa  27827900                                                                                                   <-                                                                                                   ==                                                                                          --------->ANAC55(2)                                                                                          --------->ANAC58                                                                                          --------->bZIP60(2)                                             --------->ANAC58                             <---------ANAC55(2) ------MYB46(1)                              --------->ANAC58                             --------->ANAC46 ---------->GT1                             --------->SPL7                                --------->ANAC58 ------MYB83                               ------>MYB83                                   --------->ANAC55(1) -----ARR14(2)                             --------->MYB52(1)                     <---------MYB52(1) ---->ARR14(2)                             ------>MYB46(1)                 <---------ANAC58        == >MYB46(1)                               <---------MYB52(2)                <---------ANAC58    ------ ------->AGL15                          --------->DEAR3(2)            --------->ATHB12 <---------WRKY38(1) -GT1       <---------MYB46(3)         ------->TEIL                  --------->MYB46(3)<---------ZAT18 >MYB83  <----------DOF2        <---------TOE2(3)                 --------->ZAT18<---------RAP2.6(3) --------AGL15 <-------TEIL    <-----------GT1  --------->MYB52(1)<---------ZAT18<-----------HVH21 --   tttggtttatactttggttcatattgctcttatttacgatgaaccgaacgaaaccgaaattggattagtgaaccattgcgagccgttagtccacgtaatg  27828000             <-----------HVH21             <-----------TGA1            --------->ANAC58            <---------TGA1a            --------->ANAC46            --------->O2            --------->bZIP60(2)            <---------O2            --------->TGA1a            --------->ANAC58            ========================bZIP_DOF            --------->ANAC55(1)       <---------O2            <---------ANAC55(2)       ===============================bZIP_DOF            --------->ANAC55(2)       --------->O2           <-----------STF1           ============================================bZIP_DOF       ----------->HVH21              ===================================================bZIP_DOF      <-----------HVH21               <---------ANAC46     --------->ANAC46                 <---------bZIP60(2)   <---------At5g28300                --------->TGA1a  <---------WRKY18(1)    ---------->DOF2--------->ALFIN1                      ======================= --------->WRKY38(1)     =======================bZIP_DOF                      <----------DOF2    ---- --------->WRKY12      --------->At5g28300                             ============================== --------->WRKY45  --------->MYB52(1) <---------TGA1a                  <----------DOF2          ----- ---------DOF2    ----------->HVH21<---------bZIP60(1)                <---------DAG2            ----- =====================bZIP_DOF  ----------->TGA1               <<<<<<<<<TBF1---------->ID1      <---- ===============================================bZIP_DOF       <------------------------ANAC81  <---- --->ICU4 <---------ALFIN1      ----------->HVH21 ------------>CBF <-----------GT1            *TSS  < --------------------->TaNAC69(2)  --------->bZIP60(1)    <----------DOF2  <-----------GT1  ---------   actttgaccgtcacacgtcactcacggtgaagcagtgacgacgtggaagaaactcaatctctttcttcttcaccttttttctttttcttcgcactggaaa  27828100     --------->ZAT2     --------->At4g35610     --------->TGA1a     <---------ZAT2     <---------At4g35610   <-----------RAV1(2)                         --------->ANAC58  --------->LBD16                              --------->ANAC46           --------->At4g35610 ==============bZIP_DOF                        --------->ANAC58           <---------At4g35610       - ----->KAN4(2)                               --------->ANAC58          <---------At4g35610          < ==============bZIP_DOF                      --------->ANAC58          --------->At4g35610          - ---->HSFC1(2)                               --------->ANAC46   <---------TOE2(2)                  -- ---->HSFB2a(1)                           <---------REM1(2)     <---------TOE1(2)       <---------ZAT14 -----HSFB2a(1)                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)           <------ZmHOX2a(2) -----HSFC1(2)                         <<<<<<<<<TBF1  --------->ANAC55(2)----------->RAV1(1)      <-- ---------LBD16               --------->HSFC1(2) <------NtERF2--------->TOE2(2)        --------->ARR11(3) -->GT1                       <---------HSFC1(2)------>NtERF2 --------->TOE1(2)        <---------ARR11(3)   attccgcaggtgagagagagaaacaatggcgaagctacttcttcttcacgcgcctcatgtaatacctaggtttagcagcagtagtagtagatcactggtc  27828200                                                                                       --------->GLK1(2)                                                                                      <---------ARR14(2)                                                                                      <---------GLK1(2)        <----------DOF2                                                               --------->ARR14(2)   --------->At4g35610                                                               --------->GLK1(1)   <---------At4g35610                             <---------ARR14(2)                --------->HSFB2a(1)   <------NtERF2                                   --------->ARR14(2)               ----------->ARR10  <---------ATERF1(1)                             <---------CCA1(2)         >>>>>>>>>SPL4  --------->DEAR3(1)              --------->ARR14(2)                        >>>>>>>>>SPL5 -------->LBD16                   <---------ARR14(2)                        >>>>>>>>>SPL1           < ---------At4g35610         ------>ZmHOX2a(1) ----------------->AGL1        --------->SPL7          - -------->At4g35610   --------->AtMYB61       <-----------------AGL1      --------->LBD16           - ------->ANAC46     <---------ARR11(3)       <-----------GT1              <---------SPL7  <---------LBD16 -------LBD16       --------->ARR11(3)--------->LBD16   --------->SPL7------------------>SPL14      <   tccgcagcggctttatacagaagacctctcctcgtgaatccccaattttcccatatcggacctcgtcttcattctccgtacaatcggagattctcggctc  27828300                              <---------ARR14(2)                             <------NtERF2                          <------NtERF2                                  <---------HSFB2a(2)              ----------->RAV1(2)                                        --------->HSFB2a(2)              <---------At4g35610                         --------->At4g35610            <-----------GT1 --------->LBD16               --------->ZAT2<---------ANAC46         --------->ARR14(2)<---------DEAR3(1)          --------->ZAT2 <---------ARR14(2)         <---------ARR14(2)<---------ANAC46            <---------ZAT2 --------->ARR14(2)          --- ---------HSFC1(2)        <---------LBD16              --------->At4g35610      ---------->DOF2 ----- -------->HSFB2a(1)     <---------DEAR3(1)             <---------At4g35610--------->LBD16    <------- -------->HSFC1(2)     ------>ZmHOX2a(1)          <------ZmHOX2a(1)   --------->GLK1(2)      -------- ---------HSFB2a(1)    <---------LBD16---------->DOF2--------->MYB46(3) <---------LBD16  <------ZmHOX2a(1)   gagccttcgacgattcacctgcttcctcggcggagatggagaaagagaaacaggaacagctgctggatggagtttctgggaaaaaagatgaggactatcc  27828400                                     <---------ARR11(3)                                     --------->ARR11(3)                               --------->ALFIN1                              <-------MYC3                          <---------ANAC58 --------->LBD16             <---------ANAC58                       <---------ANAC58 ----------->GT1             <---------ANAC46                  --------->MYB52(2)   --------->ALFIN1 ------>MYB52(1)             <---------ANAC58          <---------ANAC46           <---------ANAC58<-- ------>HVH21           <------ZmHOX2a(1)             <---------LBD16             <---------ANAC58--- --ARR14(2)     --------->YAB1------->MYC3          <---------ARR14(2)            <---------ANAC46<-- ->ARR14(2)<---------ANAC46  >>>>>>>>CAMTA3        <---------HSFC1(2)            <------NtERF2    ---   gaccggagaaatggagtatgagaataggaacgcgtgggagatttttgttgtgaagtttcggatgttatttgcttatccatggcagcgtgttcgtaaggga  27828500                               <---------ANAC58                      <------NtERF2                      ------>NtERF2                                              <--------P                     --------->RAP2.3(2)                                        <---------MYB52(1)                     --------->DEAR3(1)                                        --------->LBD16                   <---------At4g35610                                        --------->HSFB2a(2)          ----------->HVH21    <---------ANAC58                            <---------ARR14(2) -------     <---------WRKY18(1)<-----------RAV1(2)                                --------->ARR14(2) <------ -------HSFC1(2)   --------->LBD16                                       <---------MYB46(3)   <------ ------>HSFB2a(1) <---------ANAC46                             --------->At5g28300      --------->YAB1 -------HSFB2a(1) <---------ANAC58                            ----------->GT1 <---------HSFB2a(2) ------>HSFC1(2)  <---------ANAC58                         <------ZmHOX2a(1) <---------LBD16  -------   agcgtcttgaccatgacattgcgcggccaggtttcgttcttagacgctgattttagtagtaggactgtaaatttgtggttccggtagcatttatagtgaa  27828600  Previous    Next  AGI:  At1g73980.1    Description:  phosphoribulokinase/uridine kinase family protein. similar to phosphoribulokinase/uridine kinase family protein [Arabidopsis thaliana] (TAIR:AT1G26190.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67958.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15371.1); similar to hypothetical protein [Nicotiana tabacum] (GB:CAO99121.1); contains InterPro domain Adenylate cyclase; (InterPro:IPR008172); contains InterPro domain Phosphoribulokinase/uridine kinase; (InterPro:IPR006083); contains InterPro domain Uridine kinase; (InterPro:IPR000764) Range:  from: 27823810    to: 27827697    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g73990.1    Description:  SPPA (signal peptide peptidase); protease IV/ serine-type endopeptidase. similar to unknown [Populus trichocarpa] (GB:ABK95679.1); similar to hypothetical protein OsI_008610 [Oryza sativa (indica cultivar-group)] (GB:EAY87377.1); similar to hypothetical protein OsJ_007963 [Oryza sativa (japonica cultivar-group)] (GB:EAZ24480.1); contains InterPro domain Peptidase S49; (InterPro:IPR002142); contains InterPro domain Peptidase S49, protease IV; (InterPro:IPR004634); contains InterPro domain Peptidase S49, SppA; (InterPro:IPR004635) Range:  from: 27828094    to: 27832587    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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